RNA–Protein interactions for RNA: ENST00000554636.1

VTI1B-203, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 3

Gene VTI1B, Length 565 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-203ENST00000554636 NUTM1Q86Y26 1132 aa7.78□□□□□ -1.16
VTI1B-203ENST00000554636 PRKD2Q9BZL6 878 aa7.78□□□□□ -1.16
VTI1B-203ENST00000554636 SLC6A16Q9GZN6 736 aa7.78□□□□□ -1.16
VTI1B-203ENST00000554636 ERCC6Q03468 1493 aa7.78□□□□□ -1.16
VTI1B-203ENST00000554636 LAMC3Q9Y6N6 1575 aa7.77□□□□□ -1.17
VTI1B-203ENST00000554636 RGS20O76081 388 aa7.77□□□□□ -1.17
VTI1B-203ENST00000554636 PRDM9Q9NQV7 894 aa7.77□□□□□ -1.17
VTI1B-203ENST00000554636 CUX2O14529 1486 aa7.76□□□□□ -1.17
VTI1B-203ENST00000554636 HOXA2O43364 376 aa7.76□□□□□ -1.17
VTI1B-203ENST00000554636 FMNL1O95466 1100 aaPredicted RBP7.76□□□□□ -1.17
VTI1B-203ENST00000554636 TOP2AP11388 1531 aaKnown RBP7.76□□□□□ -1.17
VTI1B-203ENST00000554636 MS4A1P11836 297 aa7.75□□□□□ -1.17
VTI1B-203ENST00000554636 PDE4DQ08499 809 aa7.75□□□□□ -1.17
VTI1B-203ENST00000554636 THAP11Q96EK4 314 aa7.75□□□□□ -1.17
VTI1B-203ENST00000554636 BEGAINQ9BUH8 593 aa7.75□□□□□ -1.17
VTI1B-203ENST00000554636 THOC2Q8NI27 1593 aaKnown RBP7.75□□□□□ -1.17
VTI1B-203ENST00000554636 USP46P62068 366 aa7.74□□□□□ -1.17
VTI1B-203ENST00000554636 BRICD5Q6PL45 260 aa7.73□□□□□ -1.17
VTI1B-203ENST00000554636 FAM160A2Q8N612 972 aaPredicted RBP7.73□□□□□ -1.17
VTI1B-203ENST00000554636 SYMPKQ92797 1274 aaKnown RBP7.73□□□□□ -1.17
VTI1B-203ENST00000554636 IRX2Q9BZI1 471 aaPredicted RBP7.73□□□□□ -1.17
VTI1B-203ENST00000554636 KIF21AQ7Z4S6 1674 aa7.73□□□□□ -1.17
VTI1B-203ENST00000554636 CADPSQ9ULU8 1353 aa7.72□□□□□ -1.17
VTI1B-203ENST00000554636 NDUFV2P19404 249 aa7.72□□□□□ -1.17
VTI1B-203ENST00000554636 Q3C1V9 767 aa7.72□□□□□ -1.17
VTI1B-203ENST00000554636 SPIRE2Q8WWL2 714 aa7.72□□□□□ -1.17
VTI1B-203ENST00000554636 PLA2G2CQ5R387 149 aa7.71□□□□□ -1.18
VTI1B-203ENST00000554636 ANKLE1Q8NAG6 615 aa7.71□□□□□ -1.18
VTI1B-203ENST00000554636 FCF1Q9Y324 198 aaKnown RBP7.71□□□□□ -1.18
VTI1B-203ENST00000554636 PDS5BQ9NTI5 1447 aa7.7□□□□□ -1.18
VTI1B-203ENST00000554636 MOXD2PA6NHM9 499 aa7.7□□□□□ -1.18
VTI1B-203ENST00000554636 FDX1P10109 184 aa7.7□□□□□ -1.18
VTI1B-203ENST00000554636 EMID1Q96A84 441 aaPredicted RBP7.7□□□□□ -1.18
VTI1B-203ENST00000554636 C6orf229H3BNL8 230 aa7.69□□□□□ -1.18
VTI1B-203ENST00000554636 SLC19A1P41440 591 aa7.69□□□□□ -1.18
VTI1B-203ENST00000554636 USB1Q9BQ65 265 aaKnown RBP7.69□□□□□ -1.18
VTI1B-203ENST00000554636 TBC1D2Q9BYX2 928 aa7.69□□□□□ -1.18
VTI1B-203ENST00000554636 GPBP1L1Q9HC44 474 aaPredicted RBP7.69□□□□□ -1.18
VTI1B-203ENST00000554636 PCDHGC3Q9UN70 934 aa7.69□□□□□ -1.18
VTI1B-203ENST00000554636 SALL2Q9Y467 1007 aaPredicted RBP7.69□□□□□ -1.18
VTI1B-203ENST00000554636 MSS51Q4VC12 460 aa7.68□□□□□ -1.18
VTI1B-203ENST00000554636 LIAT1Q6ZQX7 453 aa7.68□□□□□ -1.18
VTI1B-203ENST00000554636 V9GY48 417 aaPredicted RBP7.68□□□□□ -1.18
VTI1B-203ENST00000554636 CFTRP13569 1480 aa7.68□□□□□ -1.18
VTI1B-203ENST00000554636 CSPP1Q1MSJ5 1256 aa7.67□□□□□ -1.18
VTI1B-203ENST00000554636 MRC2Q9UBG0 1479 aa7.66□□□□□ -1.18
VTI1B-203ENST00000554636 WDR62O43379 1518 aa7.66□□□□□ -1.18
VTI1B-203ENST00000554636 GFRA3O60609 400 aa7.65□□□□□ -1.18
VTI1B-203ENST00000554636 CCDC24Q8N4L8 307 aa7.65□□□□□ -1.18
VTI1B-203ENST00000554636 CCDC88BA6NC98 1476 aa7.64□□□□□ -1.19
VTI1B-203ENST00000554636 FANCD2Q9BXW9 1451 aa7.64□□□□□ -1.19
VTI1B-203ENST00000554636 CEP164Q9UPV0 1460 aa7.64□□□□□ -1.19
VTI1B-203ENST00000554636 TPRNQ4KMQ1 711 aa7.64□□□□□ -1.19
VTI1B-203ENST00000554636 ZNF697Q5TEC3 545 aa7.64□□□□□ -1.19
VTI1B-203ENST00000554636 SPRYD7Q5W111 196 aa7.64□□□□□ -1.19
VTI1B-203ENST00000554636 RETREG3Q86VR2 466 aa7.64□□□□□ -1.19
VTI1B-203ENST00000554636 PRDM2Q13029 1718 aa7.64□□□□□ -1.19
VTI1B-203ENST00000554636 RSBN1LQ6PCB5 846 aaPredicted RBP7.63□□□□□ -1.19
VTI1B-203ENST00000554636 Q6ZNB5 142 aa7.63□□□□□ -1.19
VTI1B-203ENST00000554636 KDM4CQ9H3R0 1056 aa7.63□□□□□ -1.19
VTI1B-203ENST00000554636 PDZRN3Q9UPQ7 1066 aa7.63□□□□□ -1.19
VTI1B-203ENST00000554636 PCDHB15Q9Y5E8 787 aa7.63□□□□□ -1.19
VTI1B-203ENST00000554636 TNFRSF10AO00220 468 aa7.62□□□□□ -1.19
VTI1B-203ENST00000554636 ZBTB24O43167 697 aaPredicted RBP7.62□□□□□ -1.19
VTI1B-203ENST00000554636 DXOO77932 396 aaKnown RBP7.62□□□□□ -1.19
VTI1B-203ENST00000554636 JUNDP17535 347 aa7.62□□□□□ -1.19
VTI1B-203ENST00000554636 MMP16P51512 607 aa7.62□□□□□ -1.19
VTI1B-203ENST00000554636 MTMR2Q13614 643 aa7.62□□□□□ -1.19
VTI1B-203ENST00000554636 DIXDC1Q155Q3 683 aa7.62□□□□□ -1.19
VTI1B-203ENST00000554636 MYSM1Q5VVJ2 828 aa7.62□□□□□ -1.19
VTI1B-203ENST00000554636 RIC3Q7Z5B4 369 aa7.62□□□□□ -1.19
VTI1B-203ENST00000554636 FOXC1Q12948 553 aa7.61□□□□□ -1.19
VTI1B-203ENST00000554636 ZNF598Q86UK7 904 aaKnown RBP7.61□□□□□ -1.19
VTI1B-203ENST00000554636 PRR7Q8TB68 274 aa7.61□□□□□ -1.19
VTI1B-203ENST00000554636 CABLES1Q8TDN4 633 aa7.61□□□□□ -1.19
VTI1B-203ENST00000554636 TSC1Q92574 1164 aa7.6□□□□□ -1.19
VTI1B-203ENST00000554636 FAM117AQ9C073 453 aa7.6□□□□□ -1.19
VTI1B-203ENST00000554636 POLR3EQ9NVU0 708 aa7.6□□□□□ -1.19
VTI1B-203ENST00000554636 LIMD1Q9UGP4 676 aa7.6□□□□□ -1.19
VTI1B-203ENST00000554636 ATP1B4Q9UN42 357 aaPredicted RBP7.6□□□□□ -1.19
VTI1B-203ENST00000554636 URB2Q14146 1524 aaKnown RBP7.59□□□□□ -1.19
VTI1B-203ENST00000554636 SPTLC1O15269 473 aa7.59□□□□□ -1.19
VTI1B-203ENST00000554636 NUDT12Q9BQG2 462 aa7.59□□□□□ -1.19
VTI1B-203ENST00000554636 HRCP23327 699 aa7.58□□□□□ -1.2
VTI1B-203ENST00000554636 RPIAP49247 311 aa7.58□□□□□ -1.2
VTI1B-203ENST00000554636 NEUROD2Q15784 382 aa7.58□□□□□ -1.2
VTI1B-203ENST00000554636 QPCTQ16769 361 aa7.58□□□□□ -1.2
VTI1B-203ENST00000554636 TRIM67Q6ZTA4 783 aa7.58□□□□□ -1.2
VTI1B-203ENST00000554636 ZBTB3Q9H5J0 574 aa7.58□□□□□ -1.2
VTI1B-203ENST00000554636 NUTM2BA6NNL0 878 aaPredicted RBP7.57□□□□□ -1.2
VTI1B-203ENST00000554636 NUTM2EB1AL46 878 aaPredicted RBP7.57□□□□□ -1.2
VTI1B-203ENST00000554636 CFAP99D6REC4 459 aa7.57□□□□□ -1.2
VTI1B-203ENST00000554636 NRG2O14511 850 aaPredicted RBP7.57□□□□□ -1.2
VTI1B-203ENST00000554636 CD2BP2O95400 341 aaKnown RBP7.57□□□□□ -1.2
VTI1B-203ENST00000554636 CLK2P49760 499 aaKnown RBP7.57□□□□□ -1.2
VTI1B-203ENST00000554636 LAPTM4AQ15012 233 aa7.57□□□□□ -1.2
VTI1B-203ENST00000554636 NUTM2DQ5VT03 806 aaPredicted RBP7.57□□□□□ -1.2
VTI1B-203ENST00000554636 NUTM2AQ8IVF1 878 aaPredicted RBP7.57□□□□□ -1.2
VTI1B-203ENST00000554636 TRIM32Q13049 653 aa7.56□□□□□ -1.2
VTI1B-203ENST00000554636 CCNYL3P0C7X3 344 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms