RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 MINK1Q8N4C8 1332 aaPredicted RBP17.24■□□□□ 0.35
SHMT2-209ENST00000553949 CERKQ8TCT0 537 aa17.24■□□□□ 0.35
SHMT2-209ENST00000553949 C19orf44Q9H6X5 657 aa17.24■□□□□ 0.35
SHMT2-209ENST00000553949 HSPA5P11021 654 aaKnown RBP17.23■□□□□ 0.35
SHMT2-209ENST00000553949 HIRIP3Q9BW71 556 aaPredicted RBP17.23■□□□□ 0.35
SHMT2-209ENST00000553949 MSH6P52701 1360 aa17.23■□□□□ 0.35
SHMT2-209ENST00000553949 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.22■□□□□ 0.35
SHMT2-209ENST00000553949 SBNO2Q9Y2G9 1366 aa17.21■□□□□ 0.35
SHMT2-209ENST00000553949 TESK2Q96S53 571 aa17.21■□□□□ 0.35
SHMT2-209ENST00000553949 XIRP1Q702N8 1843 aaKnown RBP17.21■□□□□ 0.35
SHMT2-209ENST00000553949 IQSEC2Q5JU85 1478 aa17.2■□□□□ 0.34
SHMT2-209ENST00000553949 ATF3P18847 181 aa17.2■□□□□ 0.34
SHMT2-209ENST00000553949 NALCNQ8IZF0 1738 aa17.2■□□□□ 0.34
SHMT2-209ENST00000553949 DCCP43146 1447 aa17.2■□□□□ 0.34
SHMT2-209ENST00000553949 QRICH2Q9H0J4 1663 aa17.2■□□□□ 0.34
SHMT2-209ENST00000553949 ADGRB2O60241 1585 aa17.19■□□□□ 0.34
SHMT2-209ENST00000553949 WASLO00401 505 aaPredicted RBP17.18■□□□□ 0.34
SHMT2-209ENST00000553949 CADPS2Q86UW7 1296 aa17.18■□□□□ 0.34
SHMT2-209ENST00000553949 CDC42BPGQ6DT37 1551 aa17.18■□□□□ 0.34
SHMT2-209ENST00000553949 EVC2Q86UK5 1308 aa17.17■□□□□ 0.34
SHMT2-209ENST00000553949 SLC24A1O60721 1099 aa17.16■□□□□ 0.34
SHMT2-209ENST00000553949 CDK19Q9BWU1 502 aa17.16■□□□□ 0.34
SHMT2-209ENST00000553949 TULP4Q9NRJ4 1543 aa17.15■□□□□ 0.34
SHMT2-209ENST00000553949 TMF1P82094 1093 aa17.14■□□□□ 0.33
SHMT2-209ENST00000553949 MST1RQ04912 1400 aa17.13■□□□□ 0.33
SHMT2-209ENST00000553949 NUTM2FA1L443 756 aa17.13■□□□□ 0.33
SHMT2-209ENST00000553949 TOM1O60784 492 aa17.13■□□□□ 0.33
SHMT2-209ENST00000553949 SRPK2P78362 688 aaKnown RBP17.13■□□□□ 0.33
SHMT2-209ENST00000553949 CABP2Q9NPB3 220 aa17.13■□□□□ 0.33
SHMT2-209ENST00000553949 UBAP1LF5GYI3 381 aa17.12■□□□□ 0.33
SHMT2-209ENST00000553949 SLAIN2Q9P270 581 aa17.12■□□□□ 0.33
SHMT2-209ENST00000553949 DISP3Q9P2K9 1392 aa17.12■□□□□ 0.33
SHMT2-209ENST00000553949 PRR36Q9H6K5 1346 aa17.11■□□□□ 0.33
SHMT2-209ENST00000553949 ANKARQ7Z5J8 1434 aa17.11■□□□□ 0.33
SHMT2-209ENST00000553949 C1orf167Q5SNV9 1468 aa17.11■□□□□ 0.33
SHMT2-209ENST00000553949 FMN2Q9NZ56 1722 aa17.1■□□□□ 0.33
SHMT2-209ENST00000553949 NUDT16Q96DE0 195 aaKnown RBP17.1■□□□□ 0.33
SHMT2-209ENST00000553949 CDCA8Q53HL2 280 aa17.09■□□□□ 0.33
SHMT2-209ENST00000553949 PUS7Q96PZ0 661 aaKnown RBP17.09■□□□□ 0.33
SHMT2-209ENST00000553949 ATP7BP35670 1465 aa17.08■□□□□ 0.32
SHMT2-209ENST00000553949 ATAD2Q6PL18 1390 aa17.07■□□□□ 0.32
SHMT2-209ENST00000553949 C11orf95C9JLR9 678 aaPredicted RBP17.07■□□□□ 0.32
SHMT2-209ENST00000553949 ESCO1Q5FWF5 840 aa17.07■□□□□ 0.32
SHMT2-209ENST00000553949 ORAI2Q96SN7 254 aa17.07■□□□□ 0.32
SHMT2-209ENST00000553949 CCDC61Q9Y6R9 512 aa17.07■□□□□ 0.32
SHMT2-209ENST00000553949 USP32Q8NFA0 1604 aa17.07■□□□□ 0.32
SHMT2-209ENST00000553949 PIP4K2BP78356 416 aa17.05■□□□□ 0.32
SHMT2-209ENST00000553949 BRINP3Q76B58 766 aa17.05■□□□□ 0.32
SHMT2-209ENST00000553949 PHF8Q9UPP1 1060 aa17.04■□□□□ 0.32
SHMT2-209ENST00000553949 PPIP5K1Q6PFW1 1433 aa17.04■□□□□ 0.32
SHMT2-209ENST00000553949 KIF7Q2M1P5 1343 aa17.03■□□□□ 0.32
SHMT2-209ENST00000553949 SCAF1Q9H7N4 1312 aaKnown RBP17.03■□□□□ 0.32
SHMT2-209ENST00000553949 POLR3GLQ9BT43 218 aa17.03■□□□□ 0.32
SHMT2-209ENST00000553949 CABP1Q9NZU7 370 aa17.03■□□□□ 0.32
SHMT2-209ENST00000553949 PLEKHG3A1L390 1219 aa17.02■□□□□ 0.32
SHMT2-209ENST00000553949 PMFBP1Q8TBY8 1022 aa17.02■□□□□ 0.32
SHMT2-209ENST00000553949 TMC1Q8TDI8 760 aa17.02■□□□□ 0.32
SHMT2-209ENST00000553949 WASHC2AQ641Q2 1341 aa17■□□□□ 0.31
SHMT2-209ENST00000553949 SLC12A5Q9H2X9 1139 aa17■□□□□ 0.31
SHMT2-209ENST00000553949 TOPAZ1Q8N9V7 1692 aa17■□□□□ 0.31
SHMT2-209ENST00000553949 CCDC7Q96M83 1385 aa17■□□□□ 0.31
SHMT2-209ENST00000553949 NINLQ9Y2I6 1382 aa17■□□□□ 0.31
SHMT2-209ENST00000553949 NGDNQ8NEJ9 315 aaKnown RBP16.99■□□□□ 0.31
SHMT2-209ENST00000553949 ROBO1Q9Y6N7 1651 aa16.99■□□□□ 0.31
SHMT2-209ENST00000553949 ACEP12821 1306 aa16.98■□□□□ 0.31
SHMT2-209ENST00000553949 RGPD8O14715 1765 aaPredicted RBP16.98■□□□□ 0.31
SHMT2-209ENST00000553949 FOXO3O43524 673 aa16.98■□□□□ 0.31
SHMT2-209ENST00000553949 POLR3AO14802 1390 aaPredicted RBP16.98■□□□□ 0.31
SHMT2-209ENST00000553949 ITSN1Q15811 1721 aa16.98■□□□□ 0.31
SHMT2-209ENST00000553949 DDX17Q92841 729 aaKnown RBP16.97■□□□□ 0.31
SHMT2-209ENST00000553949 KIF1AQ12756 1690 aa16.97■□□□□ 0.31
SHMT2-209ENST00000553949 NPHP3Q7Z494 1330 aa16.96■□□□□ 0.31
SHMT2-209ENST00000553949 FBXO41Q8TF61 875 aa16.96■□□□□ 0.31
SHMT2-209ENST00000553949 PSME1Q06323 249 aa16.95■□□□□ 0.3
SHMT2-209ENST00000553949 TERF2IPQ9NYB0 399 aa16.95■□□□□ 0.3
SHMT2-209ENST00000553949 CD163L1Q9NR16 1453 aa16.94■□□□□ 0.3
SHMT2-209ENST00000553949 ZNF316A6NFI3 1004 aaPredicted RBP16.94■□□□□ 0.3
SHMT2-209ENST00000553949 XPCQ01831 940 aaPredicted RBP16.94■□□□□ 0.3
SHMT2-209ENST00000553949 HDGFL2Q7Z4V5 671 aaPredicted RBP16.94■□□□□ 0.3
SHMT2-209ENST00000553949 ZNF692Q9BU19 519 aaPredicted RBP16.94■□□□□ 0.3
SHMT2-209ENST00000553949 CPSF1Q10570 1443 aaKnown RBP16.94■□□□□ 0.3
SHMT2-209ENST00000553949 A0A1W2PP64 1363 aa16.93■□□□□ 0.3
SHMT2-209ENST00000553949 ANKRD36BQ8N2N9 1353 aa16.93■□□□□ 0.3
SHMT2-209ENST00000553949 KRT28Q7Z3Y7 464 aa16.93■□□□□ 0.3
SHMT2-209ENST00000553949 SOS2Q07890 1332 aaPredicted RBP16.93■□□□□ 0.3
SHMT2-209ENST00000553949 AHDC1Q5TGY3 1603 aaPredicted RBP16.92■□□□□ 0.3
SHMT2-209ENST00000553949 ILDR1Q86SU0 546 aaPredicted RBP16.92■□□□□ 0.3
SHMT2-209ENST00000553949 PXDNQ92626 1479 aa16.92■□□□□ 0.3
SHMT2-209ENST00000553949 MYOM1P52179 1685 aa16.91■□□□□ 0.3
SHMT2-209ENST00000553949 KTN1Q86UP2 1357 aaKnown RBP16.91■□□□□ 0.3
SHMT2-209ENST00000553949 USP6P35125 1406 aa16.91■□□□□ 0.3
SHMT2-209ENST00000553949 PANK3Q9H999 370 aa16.91■□□□□ 0.3
SHMT2-209ENST00000553949 NHSL1Q5SYE7 1610 aa16.91■□□□□ 0.3
SHMT2-209ENST00000553949 HSPA1LP34931 641 aa16.9■□□□□ 0.3
SHMT2-209ENST00000553949 SBNO1A3KN83 1393 aa16.89■□□□□ 0.29
SHMT2-209ENST00000553949 SSH2Q76I76 1423 aa16.88■□□□□ 0.29
SHMT2-209ENST00000553949 CARD14Q9BXL6 1004 aa16.88■□□□□ 0.29
SHMT2-209ENST00000553949 BRD4O60885 1362 aaPredicted RBP16.88■□□□□ 0.29
SHMT2-209ENST00000553949 PAK3O75914 559 aaPredicted RBP16.87■□□□□ 0.29
SHMT2-209ENST00000553949 LRRC59Q96AG4 307 aaKnown RBP16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms