RNA–Protein interactions for RNA: ENST00000553904.1

FOXN3-205, Transcript of forkhead box N3, humanhuman

TSL 3

Gene FOXN3, Length 337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3-205ENST00000553904 KDM2AQ9Y2K7 1162 aa9.5□□□□□ -0.89
FOXN3-205ENST00000553904 C1orf167Q5SNV9 1468 aa9.5□□□□□ -0.89
FOXN3-205ENST00000553904 SOS2Q07890 1332 aaPredicted RBP9.5□□□□□ -0.89
FOXN3-205ENST00000553904 FOXO3O43524 673 aa9.49□□□□□ -0.89
FOXN3-205ENST00000553904 PSME1Q06323 249 aa9.49□□□□□ -0.89
FOXN3-205ENST00000553904 DDX17Q92841 729 aaKnown RBP9.49□□□□□ -0.89
FOXN3-205ENST00000553904 ASXL1Q8IXJ9 1541 aa9.49□□□□□ -0.89
FOXN3-205ENST00000553904 C8orf37Q96NL8 207 aa9.48□□□□□ -0.89
FOXN3-205ENST00000553904 QTRT2Q9H974 415 aaKnown RBP9.48□□□□□ -0.89
FOXN3-205ENST00000553904 COL16A1Q07092 1604 aaPredicted RBP9.48□□□□□ -0.89
FOXN3-205ENST00000553904 PIK3C2GO75747 1445 aa9.48□□□□□ -0.89
FOXN3-205ENST00000553904 YTHDC2Q9H6S0 1430 aaKnown RBP9.48□□□□□ -0.89
FOXN3-205ENST00000553904 NUTM2FA1L443 756 aa9.47□□□□□ -0.89
FOXN3-205ENST00000553904 TECPR2O15040 1411 aa9.47□□□□□ -0.89
FOXN3-205ENST00000553904 ADAMTS2O95450 1211 aa9.46□□□□□ -0.9
FOXN3-205ENST00000553904 RBM6P78332 1123 aaKnown RBP9.46□□□□□ -0.9
FOXN3-205ENST00000553904 PRAM1Q96QH2 718 aa9.46□□□□□ -0.9
FOXN3-205ENST00000553904 AFF2P51816 1311 aa9.46□□□□□ -0.9
FOXN3-205ENST00000553904 PNPLA6Q8IY17 1366 aa9.46□□□□□ -0.9
FOXN3-205ENST00000553904 PPLO60437 1756 aa9.45□□□□□ -0.9
FOXN3-205ENST00000553904 HAP1P54257 671 aaPredicted RBP9.45□□□□□ -0.9
FOXN3-205ENST00000553904 KRT28Q7Z3Y7 464 aa9.45□□□□□ -0.9
FOXN3-205ENST00000553904 SAFB2Q14151 953 aaKnown RBP eCLIP9.44□□□□□ -0.9
FOXN3-205ENST00000553904 USP21Q9UK80 565 aa9.44□□□□□ -0.9
FOXN3-205ENST00000553904 TRPC5Q9UL62 973 aaPredicted RBP9.44□□□□□ -0.9
FOXN3-205ENST00000553904 PHF8Q9UPP1 1060 aa9.44□□□□□ -0.9
FOXN3-205ENST00000553904 TRAK1Q9UPV9 953 aa9.44□□□□□ -0.9
FOXN3-205ENST00000553904 MYOM2P54296 1465 aa9.44□□□□□ -0.9
FOXN3-205ENST00000553904 SHPRHQ149N8 1683 aa9.43□□□□□ -0.9
FOXN3-205ENST00000553904 EIF3AQ14152 1382 aaKnown RBP9.43□□□□□ -0.9
FOXN3-205ENST00000553904 FNBP4Q8N3X1 1017 aaPredicted RBP9.43□□□□□ -0.9
FOXN3-205ENST00000553904 LRP6O75581 1613 aa9.42□□□□□ -0.9
FOXN3-205ENST00000553904 NRXN1Q9ULB1 1477 aa9.42□□□□□ -0.9
FOXN3-205ENST00000553904 PLEKHH1Q9ULM0 1364 aa9.42□□□□□ -0.9
FOXN3-205ENST00000553904 XPCQ01831 940 aaPredicted RBP9.42□□□□□ -0.9
FOXN3-205ENST00000553904 SPATA31A3Q5VYP0 1347 aa9.41□□□□□ -0.9
FOXN3-205ENST00000553904 WASLO00401 505 aaPredicted RBP9.41□□□□□ -0.9
FOXN3-205ENST00000553904 LMOD2Q6P5Q4 547 aa9.41□□□□□ -0.9
FOXN3-205ENST00000553904 NALCNQ8IZF0 1738 aa9.41□□□□□ -0.9
FOXN3-205ENST00000553904 NHSL1Q5SYE7 1610 aa9.41□□□□□ -0.9
FOXN3-205ENST00000553904 CDC42BPGQ6DT37 1551 aa9.41□□□□□ -0.9
FOXN3-205ENST00000553904 SETD1AO15047 1707 aaKnown RBP9.4□□□□□ -0.9
FOXN3-205ENST00000553904 NGDNQ8NEJ9 315 aaKnown RBP9.4□□□□□ -0.9
FOXN3-205ENST00000553904 CDK12Q9NYV4 1490 aaPredicted RBP9.4□□□□□ -0.91
FOXN3-205ENST00000553904 GPRASP1Q5JY77 1395 aa9.39□□□□□ -0.91
FOXN3-205ENST00000553904 PMFBP1Q8TBY8 1022 aa9.39□□□□□ -0.91
FOXN3-205ENST00000553904 UPF1Q92900 1129 aaKnown RBP eCLIP9.39□□□□□ -0.91
FOXN3-205ENST00000553904 LAMC1P11047 1609 aa9.38□□□□□ -0.91
FOXN3-205ENST00000553904 MINK1Q8N4C8 1332 aaPredicted RBP9.38□□□□□ -0.91
FOXN3-205ENST00000553904 DLC1Q96QB1 1528 aa9.38□□□□□ -0.91
FOXN3-205ENST00000553904 HIRIP3Q9BW71 556 aaPredicted RBP9.38□□□□□ -0.91
FOXN3-205ENST00000553904 ANKARQ7Z5J8 1434 aa9.38□□□□□ -0.91
FOXN3-205ENST00000553904 SBNO1A3KN83 1393 aa9.37□□□□□ -0.91
FOXN3-205ENST00000553904 ARHGEF10O15013 1369 aa9.37□□□□□ -0.91
FOXN3-205ENST00000553904 IFT172Q9UG01 1749 aa9.37□□□□□ -0.91
FOXN3-205ENST00000553904 UNC5CLQ8IV45 518 aa9.37□□□□□ -0.91
FOXN3-205ENST00000553904 GJD4Q96KN9 370 aaPredicted RBP9.37□□□□□ -0.91
FOXN3-205ENST00000553904 PXDNQ92626 1479 aa9.36□□□□□ -0.91
FOXN3-205ENST00000553904 PAK3O75914 559 aaPredicted RBP9.36□□□□□ -0.91
FOXN3-205ENST00000553904 CCDC125Q86Z20 511 aa9.36□□□□□ -0.91
FOXN3-205ENST00000553904 NUDT16Q96DE0 195 aaKnown RBP9.36□□□□□ -0.91
FOXN3-205ENST00000553904 CDK19Q9BWU1 502 aa9.36□□□□□ -0.91
FOXN3-205ENST00000553904 CCDC61Q9Y6R9 512 aa9.36□□□□□ -0.91
FOXN3-205ENST00000553904 KNDC1Q76NI1 1749 aa9.36□□□□□ -0.91
FOXN3-205ENST00000553904 NEUROD1Q13562 356 aa9.34□□□□□ -0.91
FOXN3-205ENST00000553904 CABLES1Q8TDN4 633 aa9.34□□□□□ -0.91
FOXN3-205ENST00000553904 CCDC9Q9Y3X0 531 aaKnown RBP9.34□□□□□ -0.91
FOXN3-205ENST00000553904 TNS3Q68CZ2 1445 aa9.33□□□□□ -0.92
FOXN3-205ENST00000553904 PLEKHG5O94827 1062 aa9.33□□□□□ -0.92
FOXN3-205ENST00000553904 SRPK2P78362 688 aaKnown RBP9.33□□□□□ -0.92
FOXN3-205ENST00000553904 L3MBTL2Q969R5 705 aa9.33□□□□□ -0.92
FOXN3-205ENST00000553904 ATAD2Q6PL18 1390 aa9.33□□□□□ -0.92
FOXN3-205ENST00000553904 ADGRB1O14514 1584 aa9.33□□□□□ -0.92
FOXN3-205ENST00000553904 KIF1AQ12756 1690 aa9.32□□□□□ -0.92
FOXN3-205ENST00000553904 FMN2Q9NZ56 1722 aa9.32□□□□□ -0.92
FOXN3-205ENST00000553904 VPS72Q15906 364 aa9.32□□□□□ -0.92
FOXN3-205ENST00000553904 NBPF1Q3BBV0 1214 aa9.32□□□□□ -0.92
FOXN3-205ENST00000553904 CENPJQ9HC77 1338 aaPredicted RBP9.31□□□□□ -0.92
FOXN3-205ENST00000553904 ATRNO75882 1429 aa9.31□□□□□ -0.92
FOXN3-205ENST00000553904 COL22A1Q8NFW1 1626 aaPredicted RBP9.31□□□□□ -0.92
FOXN3-205ENST00000553904 PLEKHG3A1L390 1219 aa9.31□□□□□ -0.92
FOXN3-205ENST00000553904 FAM83GA6ND36 823 aa9.31□□□□□ -0.92
FOXN3-205ENST00000553904 SF3B2Q13435 895 aaKnown RBP9.31□□□□□ -0.92
FOXN3-205ENST00000553904 NBPF8Q3BBV2 869 aa9.31□□□□□ -0.92
FOXN3-205ENST00000553904 BCL9LQ86UU0 1499 aa9.31□□□□□ -0.92
FOXN3-205ENST00000553904 PRR36Q9H6K5 1346 aa9.31□□□□□ -0.92
FOXN3-205ENST00000553904 ONECUT3O60422 494 aaPredicted RBP9.3□□□□□ -0.92
FOXN3-205ENST00000553904 NLRP13Q86W25 1043 aa9.3□□□□□ -0.92
FOXN3-205ENST00000553904 ABTB2Q8N961 1025 aa9.3□□□□□ -0.92
FOXN3-205ENST00000553904 SIN3AQ96ST3 1273 aa9.3□□□□□ -0.92
FOXN3-205ENST00000553904 TULP4Q9NRJ4 1543 aa9.3□□□□□ -0.92
FOXN3-205ENST00000553904 RGS12O14924 1447 aa9.3□□□□□ -0.92
FOXN3-205ENST00000553904 ACEP12821 1306 aa9.3□□□□□ -0.92
FOXN3-205ENST00000553904 EVC2Q86UK5 1308 aa9.3□□□□□ -0.92
FOXN3-205ENST00000553904 A0A0G2JS52 829 aa9.29□□□□□ -0.92
FOXN3-205ENST00000553904 SLC24A1O60721 1099 aa9.29□□□□□ -0.92
FOXN3-205ENST00000553904 EVA1CP58658 441 aa9.29□□□□□ -0.92
FOXN3-205ENST00000553904 MYT1Q01538 1121 aa9.29□□□□□ -0.92
FOXN3-205ENST00000553904 TRIM26Q12899 539 aaPredicted RBP9.29□□□□□ -0.92
FOXN3-205ENST00000553904 SEPT12Q8IYM1 358 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms