RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 NSD3Q9BZ95 1437 aa22.44■■□□□ 1.18
SYNE3-202ENST00000553340 TCP11L2Q8N4U5 519 aa22.44■■□□□ 1.18
SYNE3-202ENST00000553340 RRP7AQ9Y3A4 280 aaKnown RBP22.44■■□□□ 1.18
SYNE3-202ENST00000553340 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.44■■□□□ 1.18
SYNE3-202ENST00000553340 PHF23Q9BUL5 403 aaPredicted RBP22.43■■□□□ 1.18
SYNE3-202ENST00000553340 INO80Q9ULG1 1556 aaPredicted RBP22.43■■□□□ 1.18
SYNE3-202ENST00000553340 SLKQ9H2G2 1235 aaPredicted RBP22.43■■□□□ 1.18
SYNE3-202ENST00000553340 PCDHB15Q9Y5E8 787 aa22.43■■□□□ 1.18
SYNE3-202ENST00000553340 IFT172Q9UG01 1749 aa22.42■■□□□ 1.18
SYNE3-202ENST00000553340 IQSEC2Q5JU85 1478 aa22.42■■□□□ 1.18
SYNE3-202ENST00000553340 TNNT2P45379 298 aaPredicted RBP22.41■■□□□ 1.18
SYNE3-202ENST00000553340 NRXN1Q9ULB1 1477 aa22.41■■□□□ 1.18
SYNE3-202ENST00000553340 RLBP1P12271 317 aa22.4■■□□□ 1.18
SYNE3-202ENST00000553340 PRKCSHP14314 528 aaPredicted RBP22.4■■□□□ 1.18
SYNE3-202ENST00000553340 RWDD1Q9H446 243 aaPredicted RBP22.4■■□□□ 1.18
SYNE3-202ENST00000553340 TBC1D32Q96NH3 1257 aa22.4■■□□□ 1.18
SYNE3-202ENST00000553340 POGKQ9P215 609 aa22.4■■□□□ 1.18
SYNE3-202ENST00000553340 PDZRN3Q9UPQ7 1066 aa22.4■■□□□ 1.18
SYNE3-202ENST00000553340 CCDC27Q2M243 656 aa22.39■■□□□ 1.18
SYNE3-202ENST00000553340 FAM43AQ8N2R8 423 aa22.39■■□□□ 1.18
SYNE3-202ENST00000553340 ANTXR1Q9H6X2 564 aa22.38■■□□□ 1.17
SYNE3-202ENST00000553340 MROH1Q8NDA8 1641 aa22.38■■□□□ 1.17
SYNE3-202ENST00000553340 SETBP1Q9Y6X0 1596 aa22.38■■□□□ 1.17
SYNE3-202ENST00000553340 CFAP53Q96M91 514 aa22.37■■□□□ 1.17
SYNE3-202ENST00000553340 SLC12A5Q9H2X9 1139 aa22.37■■□□□ 1.17
SYNE3-202ENST00000553340 EFCAB6Q5THR3 1501 aa22.37■■□□□ 1.17
SYNE3-202ENST00000553340 BCL2L13Q9BXK5 485 aa22.37■■□□□ 1.17
SYNE3-202ENST00000553340 TNNQ9UQP3 1299 aa22.37■■□□□ 1.17
SYNE3-202ENST00000553340 FANCAO15360 1455 aa22.37■■□□□ 1.17
SYNE3-202ENST00000553340 MYH16Q9H6N6 1097 aa22.36■■□□□ 1.17
SYNE3-202ENST00000553340 MROH2AA6NES4 1674 aa22.36■■□□□ 1.17
SYNE3-202ENST00000553340 MTHFSP49914 203 aa22.35■■□□□ 1.17
SYNE3-202ENST00000553340 TRAK1Q9UPV9 953 aa22.35■■□□□ 1.17
SYNE3-202ENST00000553340 NOS1P29475 1434 aa22.35■■□□□ 1.17
SYNE3-202ENST00000553340 NCBP3Q53F19 620 aaKnown RBP22.34■■□□□ 1.17
SYNE3-202ENST00000553340 ZNF518AQ6AHZ1 1483 aa22.34■■□□□ 1.17
SYNE3-202ENST00000553340 TBC1D2Q9BYX2 928 aa22.34■■□□□ 1.17
SYNE3-202ENST00000553340 ABCA9Q8IUA7 1624 aa22.33■■□□□ 1.16
SYNE3-202ENST00000553340 L1TD1Q5T7N2 865 aaKnown RBP22.33■■□□□ 1.16
SYNE3-202ENST00000553340 USP32Q8NFA0 1604 aa22.32■■□□□ 1.16
SYNE3-202ENST00000553340 MVPQ14764 893 aaKnown RBP22.32■■□□□ 1.16
SYNE3-202ENST00000553340 QRICH2Q9H0J4 1663 aa22.31■■□□□ 1.16
SYNE3-202ENST00000553340 ADGRL1O94910 1474 aa22.31■■□□□ 1.16
SYNE3-202ENST00000553340 ZC3H13Q5T200 1668 aaKnown RBP22.31■■□□□ 1.16
SYNE3-202ENST00000553340 CHGAP10645 457 aaKnown RBP22.3■■□□□ 1.16
SYNE3-202ENST00000553340 ADGRB3O60242 1522 aa22.3■■□□□ 1.16
SYNE3-202ENST00000553340 ZKSCAN2Q63HK3 967 aa22.3■■□□□ 1.16
SYNE3-202ENST00000553340 PPRC1Q5VV67 1664 aaKnown RBP22.3■■□□□ 1.16
SYNE3-202ENST00000553340 C14orf93Q9H972 538 aaKnown RBP22.29■■□□□ 1.16
SYNE3-202ENST00000553340 FTSJ3Q8IY81 847 aaKnown RBP22.29■■□□□ 1.16
SYNE3-202ENST00000553340 CT47B1P0C2W7 299 aaPredicted RBP22.27■■□□□ 1.16
SYNE3-202ENST00000553340 DZIP1LQ8IYY4 767 aaKnown RBP22.27■■□□□ 1.16
SYNE3-202ENST00000553340 LMTK2Q8IWU2 1503 aa22.27■■□□□ 1.16
SYNE3-202ENST00000553340 U2AF1L5P0DN76 240 aaPredicted RBP22.27■■□□□ 1.15
SYNE3-202ENST00000553340 U2AF1Q01081 240 aaKnown RBP eCLIP22.27■■□□□ 1.15
SYNE3-202ENST00000553340 RSPH6AQ9H0K4 717 aa22.25■■□□□ 1.15
SYNE3-202ENST00000553340 NSD2O96028 1365 aa22.25■■□□□ 1.15
SYNE3-202ENST00000553340 ADGRB1O14514 1584 aa22.25■■□□□ 1.15
SYNE3-202ENST00000553340 PPLO60437 1756 aa22.23■■□□□ 1.15
SYNE3-202ENST00000553340 TMEM132EQ6IEE7 984 aa22.23■■□□□ 1.15
SYNE3-202ENST00000553340 PUS7Q96PZ0 661 aaKnown RBP22.23■■□□□ 1.15
SYNE3-202ENST00000553340 C22orf23Q9BZE7 217 aa22.23■■□□□ 1.15
SYNE3-202ENST00000553340 ADGRB2O60241 1585 aa22.22■■□□□ 1.15
SYNE3-202ENST00000553340 ANKRD36BQ8N2N9 1353 aa22.22■■□□□ 1.15
SYNE3-202ENST00000553340 EIF5BO60841 1220 aaKnown RBP22.22■■□□□ 1.15
SYNE3-202ENST00000553340 SMC4Q9NTJ3 1288 aa22.21■■□□□ 1.15
SYNE3-202ENST00000553340 EVC2Q86UK5 1308 aa22.21■■□□□ 1.15
SYNE3-202ENST00000553340 MCM4P33991 863 aa22.21■■□□□ 1.15
SYNE3-202ENST00000553340 HDAC1Q13547 482 aaPredicted RBP22.21■■□□□ 1.15
SYNE3-202ENST00000553340 DDX19BQ9UMR2 479 aa22.2■■□□□ 1.14
SYNE3-202ENST00000553340 RPGRIP1LQ68CZ1 1315 aa22.2■■□□□ 1.14
SYNE3-202ENST00000553340 SPRYD3Q8NCJ5 442 aa22.2■■□□□ 1.14
SYNE3-202ENST00000553340 KIDINS220Q9ULH0 1771 aa22.2■■□□□ 1.14
SYNE3-202ENST00000553340 MFAP1P55081 439 aaKnown RBP22.19■■□□□ 1.14
SYNE3-202ENST00000553340 TSR2Q969E8 191 aaKnown RBP22.19■■□□□ 1.14
SYNE3-202ENST00000553340 CHMP5Q9NZZ3 219 aa22.19■■□□□ 1.14
SYNE3-202ENST00000553340 GOLGA6L3A6NEY3 463 aa22.18■■□□□ 1.14
SYNE3-202ENST00000553340 TRIM27P14373 513 aa22.18■■□□□ 1.14
SYNE3-202ENST00000553340 EXOSC9Q06265 439 aaKnown RBP22.17■■□□□ 1.14
SYNE3-202ENST00000553340 NPATQ14207 1427 aa22.17■■□□□ 1.14
SYNE3-202ENST00000553340 ITPRIPQ8IWB1 547 aa22.16■■□□□ 1.14
SYNE3-202ENST00000553340 ATF7IPQ6VMQ6 1270 aa22.15■■□□□ 1.14
SYNE3-202ENST00000553340 SSH1Q8WYL5 1049 aa22.15■■□□□ 1.14
SYNE3-202ENST00000553340 FSD2A1L4K1 749 aa22.14■■□□□ 1.14
SYNE3-202ENST00000553340 TMPOP42166 694 aaKnown RBP22.14■■□□□ 1.14
SYNE3-202ENST00000553340 SMC5Q8IY18 1101 aa22.14■■□□□ 1.13
SYNE3-202ENST00000553340 TULP4Q9NRJ4 1543 aa22.14■■□□□ 1.13
SYNE3-202ENST00000553340 CFAP65Q6ZU64 1925 aaKnown RBP22.13■■□□□ 1.13
SYNE3-202ENST00000553340 GLI2P10070 1586 aa22.13■■□□□ 1.13
SYNE3-202ENST00000553340 U2SURPO15042 1029 aaKnown RBP22.13■■□□□ 1.13
SYNE3-202ENST00000553340 XRCC6P12956 609 aaKnown RBP eCLIP22.13■■□□□ 1.13
SYNE3-202ENST00000553340 HSCBQ8IWL3 235 aa22.13■■□□□ 1.13
SYNE3-202ENST00000553340 PLEKHF1Q96S99 279 aa22.13■■□□□ 1.13
SYNE3-202ENST00000553340 RRAGDQ9NQL2 400 aaPredicted RBP22.13■■□□□ 1.13
SYNE3-202ENST00000553340 CD109Q6YHK3 1445 aa22.12■■□□□ 1.13
SYNE3-202ENST00000553340 TRIM35Q9UPQ4 493 aa22.11■■□□□ 1.13
SYNE3-202ENST00000553340 IL16Q14005 1332 aa22.11■■□□□ 1.13
SYNE3-202ENST00000553340 NOB1Q9ULX3 412 aaKnown RBP22.11■■□□□ 1.13
SYNE3-202ENST00000553340 ABCC11Q96J66 1382 aa22.11■■□□□ 1.13
SYNE3-202ENST00000553340 TRAK2O60296 914 aa22.1■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms