RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 LRRC59Q96AG4 307 aaKnown RBP22.09■■□□□ 1.13
SHMT2-204ENST00000553324 ESCO1Q5FWF5 840 aa22.08■■□□□ 1.13
SHMT2-204ENST00000553324 ORAI2Q96SN7 254 aa22.08■■□□□ 1.13
SHMT2-204ENST00000553324 PHF23Q9BUL5 403 aaPredicted RBP22.08■■□□□ 1.13
SHMT2-204ENST00000553324 KNDC1Q76NI1 1749 aa22.08■■□□□ 1.12
SHMT2-204ENST00000553324 DLC1Q96QB1 1528 aa22.07■■□□□ 1.12
SHMT2-204ENST00000553324 ADGRB1O14514 1584 aa22.07■■□□□ 1.12
SHMT2-204ENST00000553324 AHDC1Q5TGY3 1603 aaPredicted RBP22.06■■□□□ 1.12
SHMT2-204ENST00000553324 PHLPP1O60346 1717 aa22.06■■□□□ 1.12
SHMT2-204ENST00000553324 SAFB2Q14151 953 aaKnown RBP eCLIP22.05■■□□□ 1.12
SHMT2-204ENST00000553324 SPATA31A6Q5VVP1 1343 aa22.05■■□□□ 1.12
SHMT2-204ENST00000553324 CDC42BPGQ6DT37 1551 aa22.04■■□□□ 1.12
SHMT2-204ENST00000553324 MED1Q15648 1581 aaPredicted RBP22.03■■□□□ 1.12
SHMT2-204ENST00000553324 NUTM2FA1L443 756 aa22.02■■□□□ 1.12
SHMT2-204ENST00000553324 NPHP3Q7Z494 1330 aa22.02■■□□□ 1.12
SHMT2-204ENST00000553324 COL16A1Q07092 1604 aaPredicted RBP22■■□□□ 1.11
SHMT2-204ENST00000553324 NBPF1Q3BBV0 1214 aa22■■□□□ 1.11
SHMT2-204ENST00000553324 DDX17Q92841 729 aaKnown RBP22■■□□□ 1.11
SHMT2-204ENST00000553324 SOS2Q07890 1332 aaPredicted RBP22■■□□□ 1.11
SHMT2-204ENST00000553324 FOXO3O43524 673 aa21.98■■□□□ 1.11
SHMT2-204ENST00000553324 MINK1Q8N4C8 1332 aaPredicted RBP21.97■■□□□ 1.11
SHMT2-204ENST00000553324 EIF3AQ14152 1382 aaKnown RBP21.97■■□□□ 1.11
SHMT2-204ENST00000553324 WASLO00401 505 aaPredicted RBP21.96■■□□□ 1.11
SHMT2-204ENST00000553324 HIRIP3Q9BW71 556 aaPredicted RBP21.96■■□□□ 1.11
SHMT2-204ENST00000553324 KIAA1210Q9ULL0 1709 aa21.95■■□□□ 1.1
SHMT2-204ENST00000553324 PCGF6Q9BYE7 350 aa21.95■■□□□ 1.1
SHMT2-204ENST00000553324 TONSLQ96HA7 1378 aa21.95■■□□□ 1.1
SHMT2-204ENST00000553324 MEX3CQ5U5Q3 659 aaKnown RBP21.94■■□□□ 1.1
SHMT2-204ENST00000553324 ILDR2Q71H61 639 aa21.94■■□□□ 1.1
SHMT2-204ENST00000553324 PHF8Q9UPP1 1060 aa21.94■■□□□ 1.1
SHMT2-204ENST00000553324 NHSL1Q5SYE7 1610 aa21.94■■□□□ 1.1
SHMT2-204ENST00000553324 ANKARQ7Z5J8 1434 aa21.93■■□□□ 1.1
SHMT2-204ENST00000553324 PSME1Q06323 249 aa21.92■■□□□ 1.1
SHMT2-204ENST00000553324 NUTM2BA6NNL0 878 aaPredicted RBP21.9■■□□□ 1.1
SHMT2-204ENST00000553324 NUTM2EB1AL46 878 aaPredicted RBP21.9■■□□□ 1.1
SHMT2-204ENST00000553324 NUTM2AQ8IVF1 878 aaPredicted RBP21.9■■□□□ 1.1
SHMT2-204ENST00000553324 ROCK2O75116 1388 aaKnown RBP21.89■■□□□ 1.1
SHMT2-204ENST00000553324 PNPLA6Q8IY17 1366 aa21.89■■□□□ 1.1
SHMT2-204ENST00000553324 KRT28Q7Z3Y7 464 aa21.89■■□□□ 1.09
SHMT2-204ENST00000553324 RGS17Q9UGC6 210 aaPredicted RBP21.89■■□□□ 1.09
SHMT2-204ENST00000553324 FMN2Q9NZ56 1722 aa21.89■■□□□ 1.09
SHMT2-204ENST00000553324 CENPJQ9HC77 1338 aaPredicted RBP21.88■■□□□ 1.09
SHMT2-204ENST00000553324 ADGRB2O60241 1585 aa21.88■■□□□ 1.09
SHMT2-204ENST00000553324 SHPRHQ149N8 1683 aa21.88■■□□□ 1.09
SHMT2-204ENST00000553324 CLSPNQ9HAW4 1339 aa21.87■■□□□ 1.09
SHMT2-204ENST00000553324 CDK19Q9BWU1 502 aa21.87■■□□□ 1.09
SHMT2-204ENST00000553324 XPCQ01831 940 aaPredicted RBP21.86■■□□□ 1.09
SHMT2-204ENST00000553324 NBPF8Q3BBV2 869 aa21.86■■□□□ 1.09
SHMT2-204ENST00000553324 PMFBP1Q8TBY8 1022 aa21.86■■□□□ 1.09
SHMT2-204ENST00000553324 ZNF772Q68DY9 489 aaPredicted RBP21.85■■□□□ 1.09
SHMT2-204ENST00000553324 NUDT16Q96DE0 195 aaKnown RBP21.85■■□□□ 1.09
SHMT2-204ENST00000553324 PXDNQ92626 1479 aa21.83■■□□□ 1.09
SHMT2-204ENST00000553324 SPATA31A3Q5VYP0 1347 aa21.83■■□□□ 1.09
SHMT2-204ENST00000553324 TIMELESSQ9UNS1 1208 aa21.83■■□□□ 1.09
SHMT2-204ENST00000553324 CCDC61Q9Y6R9 512 aa21.83■■□□□ 1.09
SHMT2-204ENST00000553324 PRR36Q9H6K5 1346 aa21.82■■□□□ 1.08
SHMT2-204ENST00000553324 KIF1AQ12756 1690 aa21.82■■□□□ 1.08
SHMT2-204ENST00000553324 TULP4Q9NRJ4 1543 aa21.82■■□□□ 1.08
SHMT2-204ENST00000553324 NGDNQ8NEJ9 315 aaKnown RBP21.82■■□□□ 1.08
SHMT2-204ENST00000553324 ARHGEF28Q8N1W1 1705 aaKnown RBP21.82■■□□□ 1.08
SHMT2-204ENST00000553324 GPRASP1Q5JY77 1395 aa21.82■■□□□ 1.08
SHMT2-204ENST00000553324 LRP6O75581 1613 aa21.81■■□□□ 1.08
SHMT2-204ENST00000553324 SOCS7O14512 581 aa21.81■■□□□ 1.08
SHMT2-204ENST00000553324 CARD11Q9BXL7 1154 aa21.81■■□□□ 1.08
SHMT2-204ENST00000553324 SBNO1A3KN83 1393 aa21.8■■□□□ 1.08
SHMT2-204ENST00000553324 SRPK2P78362 688 aaKnown RBP21.79■■□□□ 1.08
SHMT2-204ENST00000553324 POTEAQ6S8J7 498 aa21.79■■□□□ 1.08
SHMT2-204ENST00000553324 TRPM1Q7Z4N2 1603 aa21.78■■□□□ 1.08
SHMT2-204ENST00000553324 ADAMTS2O95450 1211 aa21.78■■□□□ 1.08
SHMT2-204ENST00000553324 NGLY1Q96IV0 654 aa21.78■■□□□ 1.08
SHMT2-204ENST00000553324 C8orf37Q96NL8 207 aa21.78■■□□□ 1.08
SHMT2-204ENST00000553324 EVC2Q86UK5 1308 aa21.78■■□□□ 1.08
SHMT2-204ENST00000553324 ARHGEF10O15013 1369 aa21.76■■□□□ 1.07
SHMT2-204ENST00000553324 PLEKHG3A1L390 1219 aa21.76■■□□□ 1.07
SHMT2-204ENST00000553324 LMOD2Q6P5Q4 547 aa21.76■■□□□ 1.07
SHMT2-204ENST00000553324 AFF2P51816 1311 aa21.75■■□□□ 1.07
SHMT2-204ENST00000553324 TNS3Q68CZ2 1445 aa21.74■■□□□ 1.07
SHMT2-204ENST00000553324 USP32Q8NFA0 1604 aa21.74■■□□□ 1.07
SHMT2-204ENST00000553324 ATP7BP35670 1465 aa21.73■■□□□ 1.07
SHMT2-204ENST00000553324 SLC24A1O60721 1099 aa21.73■■□□□ 1.07
SHMT2-204ENST00000553324 HAP1P54257 671 aaPredicted RBP21.73■■□□□ 1.07
SHMT2-204ENST00000553324 CABP2Q9NPB3 220 aa21.73■■□□□ 1.07
SHMT2-204ENST00000553324 RGPD8O14715 1765 aaPredicted RBP21.73■■□□□ 1.07
SHMT2-204ENST00000553324 RALGAPBQ86X10 1494 aa21.72■■□□□ 1.07
SHMT2-204ENST00000553324 CCER1Q8TC90 406 aaPredicted RBP21.72■■□□□ 1.07
SHMT2-204ENST00000553324 COL22A1Q8NFW1 1626 aaPredicted RBP21.71■■□□□ 1.07
SHMT2-204ENST00000553324 PAK3O75914 559 aaPredicted RBP21.71■■□□□ 1.07
SHMT2-204ENST00000553324 FNBP4Q8N3X1 1017 aaPredicted RBP21.71■■□□□ 1.07
SHMT2-204ENST00000553324 ACEP12821 1306 aa21.71■■□□□ 1.07
SHMT2-204ENST00000553324 RXRBP28702 533 aa21.7■■□□□ 1.06
SHMT2-204ENST00000553324 POLR3AO14802 1390 aaPredicted RBP21.7■■□□□ 1.06
SHMT2-204ENST00000553324 QTRT2Q9H974 415 aaKnown RBP21.69■■□□□ 1.06
SHMT2-204ENST00000553324 CABP1Q9NZU7 370 aa21.68■■□□□ 1.06
SHMT2-204ENST00000553324 USP21Q9UK80 565 aa21.68■■□□□ 1.06
SHMT2-204ENST00000553324 SBNO2Q9Y2G9 1366 aa21.68■■□□□ 1.06
SHMT2-204ENST00000553324 PPIP5K1Q6PFW1 1433 aa21.66■■□□□ 1.06
SHMT2-204ENST00000553324 BRD4O60885 1362 aaPredicted RBP21.65■■□□□ 1.06
SHMT2-204ENST00000553324 CABLES1Q8TDN4 633 aa21.65■■□□□ 1.06
SHMT2-204ENST00000553324 TRPC5Q9UL62 973 aaPredicted RBP21.65■■□□□ 1.06
SHMT2-204ENST00000553324 ITSN1Q15811 1721 aa21.64■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms