RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 TRIM6-TRIM34B2RNG4 842 aa9.58□□□□□ -0.88
SCFD1-208ENST00000553278 SNPHO15079 494 aa9.58□□□□□ -0.88
SCFD1-208ENST00000553278 PTPREP23469 700 aa9.58□□□□□ -0.88
SCFD1-208ENST00000553278 SOX11P35716 441 aa9.58□□□□□ -0.88
SCFD1-208ENST00000553278 GCGRP47871 477 aa9.58□□□□□ -0.88
SCFD1-208ENST00000553278 CTDSPL2Q05D32 466 aa9.58□□□□□ -0.88
SCFD1-208ENST00000553278 KHSRPQ92945 711 aaKnown RBP eCLIP9.58□□□□□ -0.885e-7■■□□□ 14
SCFD1-208ENST00000553278 MARVELD3Q96A59 401 aa9.58□□□□□ -0.88
SCFD1-208ENST00000553278 ZSWIM6Q9HCJ5 1215 aa9.58□□□□□ -0.88
SCFD1-208ENST00000553278 PALM3A6NDB9 673 aaPredicted RBP9.57□□□□□ -0.88
SCFD1-208ENST00000553278 LMOD1P29536 600 aaPredicted RBP9.57□□□□□ -0.88
SCFD1-208ENST00000553278 TRIM34Q9BYJ4 488 aa9.57□□□□□ -0.88
SCFD1-208ENST00000553278 ALG2Q9H553 416 aa9.57□□□□□ -0.88
SCFD1-208ENST00000553278 HMX1Q9NP08 348 aaPredicted RBP9.57□□□□□ -0.88
SCFD1-208ENST00000553278 C3orf80F5H4A9 247 aa9.56□□□□□ -0.88
SCFD1-208ENST00000553278 MTMR2Q13614 643 aa9.56□□□□□ -0.88
SCFD1-208ENST00000553278 E9PSI1 815 aa9.55□□□□□ -0.88
SCFD1-208ENST00000553278 TSC1Q92574 1164 aa9.55□□□□□ -0.88
SCFD1-208ENST00000553278 GPR37L1O60883 481 aa9.54□□□□□ -0.88
SCFD1-208ENST00000553278 CCDC27Q2M243 656 aa9.54□□□□□ -0.88
SCFD1-208ENST00000553278 VRTNQ9H8Y1 702 aa9.54□□□□□ -0.88
SCFD1-208ENST00000553278 PCDHGC3Q9UN70 934 aa9.54□□□□□ -0.88
SCFD1-208ENST00000553278 LHX6Q9UPM6 363 aa9.54□□□□□ -0.88
SCFD1-208ENST00000553278 ATG7O95352 703 aa9.53□□□□□ -0.88
SCFD1-208ENST00000553278 PNMA1Q8ND90 353 aa9.53□□□□□ -0.88
SCFD1-208ENST00000553278 LRRN4Q8WUT4 740 aa9.53□□□□□ -0.88
SCFD1-208ENST00000553278 ZNF428Q96B54 188 aa9.53□□□□□ -0.88
SCFD1-208ENST00000553278 TFIP11Q9UBB9 837 aaKnown RBP9.53□□□□□ -0.88
SCFD1-208ENST00000553278 IVNS1ABPQ9Y6Y0 642 aa9.53□□□□□ -0.88
SCFD1-208ENST00000553278 SEMA3FQ13275 785 aa9.52□□□□□ -0.89
SCFD1-208ENST00000553278 GPR153Q6NV75 609 aa9.52□□□□□ -0.89
SCFD1-208ENST00000553278 SMAPO00193 183 aa9.51□□□□□ -0.89
SCFD1-208ENST00000553278 GRIPAP1Q4V328 841 aa9.51□□□□□ -0.89
SCFD1-208ENST00000553278 SND1Q7KZF4 910 aaKnown RBP eCLIP9.51□□□□□ -0.89
SCFD1-208ENST00000553278 AMOTL2Q9Y2J4 779 aa9.51□□□□□ -0.89
SCFD1-208ENST00000553278 CARNS1A5YM72 827 aa9.5□□□□□ -0.89
SCFD1-208ENST00000553278 HOXB3P14651 431 aaPredicted RBP9.5□□□□□ -0.89
SCFD1-208ENST00000553278 GUCA2AQ02747 115 aa9.5□□□□□ -0.89
SCFD1-208ENST00000553278 B4GALNT3Q6L9W6 998 aa9.5□□□□□ -0.89
SCFD1-208ENST00000553278 C6orf229H3BNL8 230 aa9.49□□□□□ -0.89
SCFD1-208ENST00000553278 SLC4A3P48751 1232 aa9.49□□□□□ -0.89
SCFD1-208ENST00000553278 PRR7Q8TB68 274 aa9.49□□□□□ -0.89
SCFD1-208ENST00000553278 UCN2Q96RP3 112 aa9.49□□□□□ -0.89
SCFD1-208ENST00000553278 MAFBQ9Y5Q3 323 aaPredicted RBP9.49□□□□□ -0.89
SCFD1-208ENST00000553278 CDCA8Q53HL2 280 aa9.48□□□□□ -0.89
SCFD1-208ENST00000553278 SLF2Q8IX21 1173 aa9.48□□□□□ -0.89
SCFD1-208ENST00000553278 HLA-CQ95604 372 aa9.48□□□□□ -0.89
SCFD1-208ENST00000553278 KRTAP3-3Q9BYR6 98 aa9.48□□□□□ -0.89
SCFD1-208ENST00000553278 KRTAP3-2Q9BYR7 98 aa9.48□□□□□ -0.89
SCFD1-208ENST00000553278 TMEM88BA6NKF7 163 aa9.47□□□□□ -0.89
SCFD1-208ENST00000553278 CFAP99D6REC4 459 aa9.47□□□□□ -0.89
SCFD1-208ENST00000553278 EIF4G2P78344 907 aaKnown RBP eCLIP9.47□□□□□ -0.89
SCFD1-208ENST00000553278 KCNH8Q96L42 1107 aa9.47□□□□□ -0.89
SCFD1-208ENST00000553278 SLC10A3P09131 477 aa9.46□□□□□ -0.9
SCFD1-208ENST00000553278 HDGFP51858 240 aaKnown RBP9.46□□□□□ -0.9
SCFD1-208ENST00000553278 EMP3P54852 163 aa9.46□□□□□ -0.9
SCFD1-208ENST00000553278 EPS8L1Q8TE68 723 aa9.46□□□□□ -0.9
SCFD1-208ENST00000553278 MYT1LQ9UL68 1186 aa9.46□□□□□ -0.9
SCFD1-208ENST00000553278 ATP9BO43861 1147 aa9.45□□□□□ -0.9
SCFD1-208ENST00000553278 PROX2Q3B8N5 592 aa9.45□□□□□ -0.9
SCFD1-208ENST00000553278 SWT1Q5T5J6 900 aaKnown RBP9.45□□□□□ -0.9
SCFD1-208ENST00000553278 NR6A1Q15406 480 aa9.44□□□□□ -0.9
SCFD1-208ENST00000553278 GNEQ9Y223 722 aaKnown RBP9.44□□□□□ -0.9
SCFD1-208ENST00000553278 TBC1D9Q6ZT07 1266 aa9.43□□□□□ -0.9
SCFD1-208ENST00000553278 KIAA1468Q9P260 1216 aa9.43□□□□□ -0.9
SCFD1-208ENST00000553278 POTEB3A0JP26 581 aa9.42□□□□□ -0.9
SCFD1-208ENST00000553278 POTEBQ6S5H4 581 aa9.42□□□□□ -0.9
SCFD1-208ENST00000553278 HS3ST6Q96QI5 342 aa9.42□□□□□ -0.9
SCFD1-208ENST00000553278 KCNK17Q96T54 332 aa9.42□□□□□ -0.9
SCFD1-208ENST00000553278 FUT2Q10981 343 aa9.41□□□□□ -0.9
SCFD1-208ENST00000553278 FAM205CA6NFA0 338 aa9.4□□□□□ -0.9
SCFD1-208ENST00000553278 ELOAQ14241 798 aaKnown RBP9.4□□□□□ -0.9
SCFD1-208ENST00000553278 CCER1Q8TC90 406 aaPredicted RBP9.4□□□□□ -0.9
SCFD1-208ENST00000553278 ATP6V1AP38606 617 aa9.39□□□□□ -0.91
SCFD1-208ENST00000553278 NR1H3Q13133 447 aa9.39□□□□□ -0.91
SCFD1-208ENST00000553278 CFHP08603 1231 aa9.38□□□□□ -0.91
SCFD1-208ENST00000553278 PER1O15534 1290 aaPredicted RBP9.37□□□□□ -0.91
SCFD1-208ENST00000553278 KANK4Q5T7N3 995 aaPredicted RBP9.37□□□□□ -0.91
SCFD1-208ENST00000553278 DESI1Q6ICB0 168 aa9.37□□□□□ -0.91
SCFD1-208ENST00000553278 RETREG3Q86VR2 466 aa9.37□□□□□ -0.91
SCFD1-208ENST00000553278 NFATC2IPQ8NCF5 419 aa9.37□□□□□ -0.91
SCFD1-208ENST00000553278 SYMPKQ92797 1274 aaKnown RBP9.37□□□□□ -0.91
SCFD1-208ENST00000553278 ZBED2Q9BTP6 218 aa9.37□□□□□ -0.91
SCFD1-208ENST00000553278 IGSF3O75054 1194 aa9.36□□□□□ -0.91
SCFD1-208ENST00000553278 RABGEF1Q9UJ41 708 aa9.36□□□□□ -0.91
SCFD1-208ENST00000553278 Q3C1V9 767 aa9.35□□□□□ -0.91
SCFD1-208ENST00000553278 TMEM164Q5U3C3 297 aa9.35□□□□□ -0.91
SCFD1-208ENST00000553278 ZBBXA8MT70 800 aa9.34□□□□□ -0.91
SCFD1-208ENST00000553278 KMT5BQ4FZB7 885 aa9.34□□□□□ -0.91
SCFD1-208ENST00000553278 SEPT9Q9UHD8 586 aaPredicted RBP9.34□□□□□ -0.91
SCFD1-208ENST00000553278 NOVA2Q9UNW9 492 aaKnown RBP9.34□□□□□ -0.91
SCFD1-208ENST00000553278 SHROOM4Q9ULL8 1493 aa9.34□□□□□ -0.91
SCFD1-208ENST00000553278 USP17L3A6NCW0 530 aa9.33□□□□□ -0.92
SCFD1-208ENST00000553278 USP17L4A6NCW7 530 aa9.33□□□□□ -0.92
SCFD1-208ENST00000553278 FAM98CQ17RN3 349 aaKnown RBP9.33□□□□□ -0.92
SCFD1-208ENST00000553278 USP17L2Q6R6M4 530 aa9.33□□□□□ -0.92
SCFD1-208ENST00000553278 USP17L1Q7RTZ2 530 aa9.33□□□□□ -0.92
SCFD1-208ENST00000553278 ZMIZ1Q9ULJ6 1067 aa9.33□□□□□ -0.92
SCFD1-208ENST00000553278 FBXO45P0C2W1 286 aa9.32□□□□□ -0.92
SCFD1-208ENST00000553278 SKIP12755 728 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms