RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 NME9Q86XW9 330 aa7.24□□□□□ -1.25
LIMA1-215ENST00000552823 EMILIN1Q9Y6C2 1016 aa7.24□□□□□ -1.25
LIMA1-215ENST00000552823 RIPK4P57078 832 aa7.23□□□□□ -1.25
LIMA1-215ENST00000552823 SPRYD3Q8NCJ5 442 aa7.23□□□□□ -1.25
LIMA1-215ENST00000552823 RUNDC1Q96C34 613 aa7.23□□□□□ -1.25
LIMA1-215ENST00000552823 IQGAP3Q86VI3 1631 aa7.23□□□□□ -1.25
LIMA1-215ENST00000552823 PTPRTO14522 1441 aa7.23□□□□□ -1.25
LIMA1-215ENST00000552823 E9PSI1 815 aa7.23□□□□□ -1.25
LIMA1-215ENST00000552823 EXOSC9Q06265 439 aaKnown RBP7.23□□□□□ -1.25
LIMA1-215ENST00000552823 DCTN1Q14203 1278 aa7.23□□□□□ -1.25
LIMA1-215ENST00000552823 FTSJ3Q8IY81 847 aaKnown RBP7.23□□□□□ -1.25
LIMA1-215ENST00000552823 TERF2IPQ9NYB0 399 aa7.23□□□□□ -1.25
LIMA1-215ENST00000552823 UNC13BO14795 1591 aa7.23□□□□□ -1.25
LIMA1-215ENST00000552823 FYB1O15117 783 aa7.23□□□□□ -1.25
LIMA1-215ENST00000552823 IGHDP01880 384 aa7.23□□□□□ -1.25
LIMA1-215ENST00000552823 NEFMP07197 916 aa7.23□□□□□ -1.25
LIMA1-215ENST00000552823 LTV1Q96GA3 475 aaPredicted RBP7.23□□□□□ -1.25
LIMA1-215ENST00000552823 SMC4Q9NTJ3 1288 aa7.23□□□□□ -1.25
LIMA1-215ENST00000552823 SLC52A1Q9NWF4 448 aa7.23□□□□□ -1.25
LIMA1-215ENST00000552823 ERVK-7P63135 1459 aa7.23□□□□□ -1.25
LIMA1-215ENST00000552823 RNF123Q5XPI4 1314 aa7.22□□□□□ -1.25
LIMA1-215ENST00000552823 POGZQ7Z3K3 1410 aa7.22□□□□□ -1.25
LIMA1-215ENST00000552823 RLBP1P12271 317 aa7.22□□□□□ -1.25
LIMA1-215ENST00000552823 LMOD2Q6P5Q4 547 aa7.22□□□□□ -1.25
LIMA1-215ENST00000552823 STAC3Q96MF2 364 aa7.22□□□□□ -1.25
LIMA1-215ENST00000552823 TSPOAP1O95153 1857 aa7.22□□□□□ -1.25
LIMA1-215ENST00000552823 PRKAR2BP31323 418 aa7.21□□□□□ -1.25
LIMA1-215ENST00000552823 ITPRIPQ8IWB1 547 aa7.21□□□□□ -1.25
LIMA1-215ENST00000552823 FANCIQ9NVI1 1328 aa7.21□□□□□ -1.25
LIMA1-215ENST00000552823 PLXNC1O60486 1568 aa7.21□□□□□ -1.26
LIMA1-215ENST00000552823 APBB1O00213 710 aa7.21□□□□□ -1.26
LIMA1-215ENST00000552823 RTL5Q5HYW3 569 aaPredicted RBP7.21□□□□□ -1.26
LIMA1-215ENST00000552823 ASXL1Q8IXJ9 1541 aa7.21□□□□□ -1.26
LIMA1-215ENST00000552823 DIAPH1O60610 1272 aaKnown RBP7.21□□□□□ -1.26
LIMA1-215ENST00000552823 IPO9Q96P70 1041 aaKnown RBP7.21□□□□□ -1.26
LIMA1-215ENST00000552823 FAM83GA6ND36 823 aa7.2□□□□□ -1.26
LIMA1-215ENST00000552823 ARXQ96QS3 562 aa7.2□□□□□ -1.26
LIMA1-215ENST00000552823 TRPM2O94759 1503 aa7.2□□□□□ -1.26
LIMA1-215ENST00000552823 ZNF428Q96B54 188 aa7.2□□□□□ -1.26
LIMA1-215ENST00000552823 C1orf115Q9H7X2 142 aa7.2□□□□□ -1.26
LIMA1-215ENST00000552823 MIS18AQ9NYP9 233 aa7.19□□□□□ -1.26
LIMA1-215ENST00000552823 A0A1W2PP64 1363 aa7.19□□□□□ -1.26
LIMA1-215ENST00000552823 NECTIN2Q92692 538 aa7.19□□□□□ -1.26
LIMA1-215ENST00000552823 PHACTR3Q96KR7 559 aa7.19□□□□□ -1.26
LIMA1-215ENST00000552823 BACH2Q9BYV9 841 aa7.19□□□□□ -1.26
LIMA1-215ENST00000552823 RPGRIP1LQ68CZ1 1315 aa7.19□□□□□ -1.26
LIMA1-215ENST00000552823 TMPOP42166 694 aaKnown RBP7.19□□□□□ -1.26
LIMA1-215ENST00000552823 RARSP54136 660 aaKnown RBP7.18□□□□□ -1.26
LIMA1-215ENST00000552823 NUDT16Q96DE0 195 aaKnown RBP7.18□□□□□ -1.26
LIMA1-215ENST00000552823 CEP152O94986 1710 aa7.18□□□□□ -1.26
LIMA1-215ENST00000552823 PCDHB15Q9Y5E8 787 aa7.18□□□□□ -1.26
LIMA1-215ENST00000552823 KIDINS220Q9ULH0 1771 aa7.18□□□□□ -1.26
LIMA1-215ENST00000552823 MADDQ8WXG6 1647 aa7.18□□□□□ -1.26
LIMA1-215ENST00000552823 NGDNQ8NEJ9 315 aaKnown RBP7.18□□□□□ -1.26
LIMA1-215ENST00000552823 KRT24Q2M2I5 525 aa7.17□□□□□ -1.26
LIMA1-215ENST00000552823 AEBP1Q8IUX7 1158 aa7.17□□□□□ -1.26
LIMA1-215ENST00000552823 SSH1Q8WYL5 1049 aa7.17□□□□□ -1.26
LIMA1-215ENST00000552823 NOB1Q9ULX3 412 aaKnown RBP7.17□□□□□ -1.26
LIMA1-215ENST00000552823 EIF2AK4Q9P2K8 1649 aaKnown RBP7.17□□□□□ -1.26
LIMA1-215ENST00000552823 KCNA4P22459 653 aa7.17□□□□□ -1.26
LIMA1-215ENST00000552823 XPCQ01831 940 aaPredicted RBP7.17□□□□□ -1.26
LIMA1-215ENST00000552823 COG3Q96JB2 828 aa7.17□□□□□ -1.26
LIMA1-215ENST00000552823 SLKQ9H2G2 1235 aaPredicted RBP7.17□□□□□ -1.26
LIMA1-215ENST00000552823 PPRC1Q5VV67 1664 aaKnown RBP7.17□□□□□ -1.26
LIMA1-215ENST00000552823 BLMP54132 1417 aaPredicted RBP7.17□□□□□ -1.26
LIMA1-215ENST00000552823 SPHKAPQ2M3C7 1700 aa7.17□□□□□ -1.26
LIMA1-215ENST00000552823 CENPQQ7L2Z9 268 aaPredicted RBP7.16□□□□□ -1.26
LIMA1-215ENST00000552823 MYH16Q9H6N6 1097 aa7.16□□□□□ -1.26
LIMA1-215ENST00000552823 ABCA9Q8IUA7 1624 aa7.16□□□□□ -1.26
LIMA1-215ENST00000552823 ZNF521Q96K83 1311 aa7.16□□□□□ -1.26
LIMA1-215ENST00000552823 SEC24BO95487 1268 aa7.16□□□□□ -1.26
LIMA1-215ENST00000552823 DEKP35659 375 aaKnown RBP7.16□□□□□ -1.26
LIMA1-215ENST00000552823 POLKQ9UBT6 870 aa7.16□□□□□ -1.26
LIMA1-215ENST00000552823 RNF17Q9BXT8 1623 aaKnown RBP7.16□□□□□ -1.26
LIMA1-215ENST00000552823 LTKP29376 864 aa7.16□□□□□ -1.26
LIMA1-215ENST00000552823 SULT6B1Q6IMI4 303 aa7.16□□□□□ -1.26
LIMA1-215ENST00000552823 TSPYL6Q8N831 410 aa7.16□□□□□ -1.26
LIMA1-215ENST00000552823 WASLO00401 505 aaPredicted RBP7.15□□□□□ -1.26
LIMA1-215ENST00000552823 PDZRN3Q9UPQ7 1066 aa7.15□□□□□ -1.26
LIMA1-215ENST00000552823 EFCAB6Q5THR3 1501 aa7.15□□□□□ -1.26
LIMA1-215ENST00000552823 ABCA6Q8N139 1617 aa7.15□□□□□ -1.26
LIMA1-215ENST00000552823 TET3O43151 1660 aa7.15□□□□□ -1.26
LIMA1-215ENST00000552823 PIK3C2GO75747 1445 aa7.15□□□□□ -1.27
LIMA1-215ENST00000552823 ZKSCAN2Q63HK3 967 aa7.15□□□□□ -1.27
LIMA1-215ENST00000552823 MCM10Q7L590 875 aa7.15□□□□□ -1.27
LIMA1-215ENST00000552823 DZIP1LQ8IYY4 767 aaKnown RBP7.15□□□□□ -1.27
LIMA1-215ENST00000552823 ABCC3O15438 1527 aa7.14□□□□□ -1.27
LIMA1-215ENST00000552823 MLH3Q9UHC1 1453 aa7.14□□□□□ -1.27
LIMA1-215ENST00000552823 METP08581 1390 aa7.14□□□□□ -1.27
LIMA1-215ENST00000552823 HSP90AB2PQ58FF8 381 aa7.14□□□□□ -1.27
LIMA1-215ENST00000552823 INO80Q9ULG1 1556 aaPredicted RBP7.14□□□□□ -1.27
LIMA1-215ENST00000552823 YTHDC2Q9H6S0 1430 aaKnown RBP7.14□□□□□ -1.27
LIMA1-215ENST00000552823 TMEM57Q8N5G2 664 aa7.14□□□□□ -1.27
LIMA1-215ENST00000552823 LNPKQ9C0E8 428 aa7.14□□□□□ -1.27
LIMA1-215ENST00000552823 TRIM35Q9UPQ4 493 aa7.14□□□□□ -1.27
LIMA1-215ENST00000552823 POLR1AO95602 1720 aaPredicted RBP7.14□□□□□ -1.27
LIMA1-215ENST00000552823 ZMYM3Q14202 1370 aa7.14□□□□□ -1.27
LIMA1-215ENST00000552823 ANKRD36BQ8N2N9 1353 aa7.14□□□□□ -1.27
LIMA1-215ENST00000552823 FOXO3O43524 673 aa7.14□□□□□ -1.27
LIMA1-215ENST00000552823 MFAP1P55081 439 aaKnown RBP7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms