RNA–Protein interactions for RNA: ENST00000550841.1

NEK3-202, Transcript of NIMA related kinase 3, humanhuman

TSL 4

Gene NEK3, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-202ENST00000550841 WAPLQ7Z5K2 1190 aa30.41■■■□□ 2.46
NEK3-202ENST00000550841 PRAM1Q96QH2 718 aa30.4■■■□□ 2.46
NEK3-202ENST00000550841 C19orf44Q9H6X5 657 aa30.4■■■□□ 2.46
NEK3-202ENST00000550841 PHF23Q9BUL5 403 aaPredicted RBP30.38■■■□□ 2.45
NEK3-202ENST00000550841 MSH6P52701 1360 aa30.38■■■□□ 2.45
NEK3-202ENST00000550841 MED1Q15648 1581 aaPredicted RBP30.37■■■□□ 2.45
NEK3-202ENST00000550841 EIF3AQ14152 1382 aaKnown RBP30.35■■■□□ 2.45
NEK3-202ENST00000550841 XIRP1Q702N8 1843 aaKnown RBP30.33■■■□□ 2.45
NEK3-202ENST00000550841 PLEKHH1Q9ULM0 1364 aa30.32■■■□□ 2.44
NEK3-202ENST00000550841 ATF3P18847 181 aa30.32■■■□□ 2.44
NEK3-202ENST00000550841 ZEB1P37275 1124 aaPredicted RBP30.32■■■□□ 2.44
NEK3-202ENST00000550841 SAFB2Q14151 953 aaKnown RBP eCLIP30.31■■■□□ 2.44
NEK3-202ENST00000550841 CADPS2Q86UW7 1296 aa30.31■■■□□ 2.44
NEK3-202ENST00000550841 ADGRL3Q9HAR2 1447 aa30.3■■■□□ 2.44
NEK3-202ENST00000550841 CENPJQ9HC77 1338 aaPredicted RBP30.3■■■□□ 2.44
NEK3-202ENST00000550841 ARHGEF28Q8N1W1 1705 aaKnown RBP30.28■■■□□ 2.44
NEK3-202ENST00000550841 DCCP43146 1447 aa30.26■■■□□ 2.43
NEK3-202ENST00000550841 MINK1Q8N4C8 1332 aaPredicted RBP30.23■■■□□ 2.43
NEK3-202ENST00000550841 SIPA1L2Q9P2F8 1722 aaPredicted RBP30.23■■■□□ 2.43
NEK3-202ENST00000550841 SLC24A1O60721 1099 aa30.23■■■□□ 2.43
NEK3-202ENST00000550841 NALCNQ8IZF0 1738 aa30.2■■■□□ 2.43
NEK3-202ENST00000550841 SLAIN2Q9P270 581 aa30.2■■■□□ 2.43
NEK3-202ENST00000550841 USP47Q96K76 1375 aa30.19■■■□□ 2.42
NEK3-202ENST00000550841 HIRIP3Q9BW71 556 aaPredicted RBP30.18■■■□□ 2.42
NEK3-202ENST00000550841 ST20-MTHFSA0A0A6YYL1 179 aa30.17■■■□□ 2.42
NEK3-202ENST00000550841 EIF4G2P78344 907 aaKnown RBP eCLIP30.17■■■□□ 2.42
NEK3-202ENST00000550841 WASLO00401 505 aaPredicted RBP30.16■■■□□ 2.42
NEK3-202ENST00000550841 CDC42BPGQ6DT37 1551 aa30.15■■■□□ 2.42
NEK3-202ENST00000550841 ADGRB2O60241 1585 aa30.13■■■□□ 2.41
NEK3-202ENST00000550841 EVC2Q86UK5 1308 aa30.13■■■□□ 2.41
NEK3-202ENST00000550841 QRICH2Q9H0J4 1663 aa30.13■■■□□ 2.41
NEK3-202ENST00000550841 SBNO2Q9Y2G9 1366 aa30.13■■■□□ 2.41
NEK3-202ENST00000550841 CDK19Q9BWU1 502 aa30.11■■■□□ 2.41
NEK3-202ENST00000550841 MST1RQ04912 1400 aa30.09■■■□□ 2.41
NEK3-202ENST00000550841 NUTM2FA1L443 756 aa30.06■■■□□ 2.4
NEK3-202ENST00000550841 SRPK2P78362 688 aaKnown RBP30.06■■■□□ 2.4
NEK3-202ENST00000550841 TESK2Q96S53 571 aa30.06■■■□□ 2.4
NEK3-202ENST00000550841 C1orf167Q5SNV9 1468 aa30.06■■■□□ 2.4
NEK3-202ENST00000550841 HSPA5P11021 654 aaKnown RBP30.05■■■□□ 2.4
NEK3-202ENST00000550841 FMN2Q9NZ56 1722 aa30.05■■■□□ 2.4
NEK3-202ENST00000550841 ANKARQ7Z5J8 1434 aa30.05■■■□□ 2.4
NEK3-202ENST00000550841 TMF1P82094 1093 aa30.03■■■□□ 2.4
NEK3-202ENST00000550841 ESCO1Q5FWF5 840 aa30.03■■■□□ 2.4
NEK3-202ENST00000550841 NUDT16Q96DE0 195 aaKnown RBP30.02■■■□□ 2.4
NEK3-202ENST00000550841 ROBO1Q9Y6N7 1651 aa30.01■■■□□ 2.4
NEK3-202ENST00000550841 PUS7Q96PZ0 661 aaKnown RBP30.01■■■□□ 2.39
NEK3-202ENST00000550841 RGS17Q9UGC6 210 aaPredicted RBP30.01■■■□□ 2.39
NEK3-202ENST00000550841 TULP4Q9NRJ4 1543 aa30.01■■■□□ 2.39
NEK3-202ENST00000550841 CDCA8Q53HL2 280 aa30■■■□□ 2.39
NEK3-202ENST00000550841 BRINP3Q76B58 766 aa30■■■□□ 2.39
NEK3-202ENST00000550841 CABP2Q9NPB3 220 aa30■■■□□ 2.39
NEK3-202ENST00000550841 ORAI2Q96SN7 254 aa29.99■■■□□ 2.39
NEK3-202ENST00000550841 CCDC61Q9Y6R9 512 aa29.99■■■□□ 2.39
NEK3-202ENST00000550841 PHF8Q9UPP1 1060 aa29.95■■■□□ 2.39
NEK3-202ENST00000550841 PRR36Q9H6K5 1346 aa29.95■■■□□ 2.38
NEK3-202ENST00000550841 ATAD2Q6PL18 1390 aa29.93■■■□□ 2.38
NEK3-202ENST00000550841 RGPD8O14715 1765 aaPredicted RBP29.9■■■□□ 2.38
NEK3-202ENST00000550841 ATP7BP35670 1465 aa29.9■■■□□ 2.38
NEK3-202ENST00000550841 USP32Q8NFA0 1604 aa29.89■■■□□ 2.38
NEK3-202ENST00000550841 PLEKHG3A1L390 1219 aa29.89■■■□□ 2.38
NEK3-202ENST00000550841 JCADQ9P266 1359 aa29.89■■■□□ 2.37
NEK3-202ENST00000550841 PMFBP1Q8TBY8 1022 aa29.88■■■□□ 2.37
NEK3-202ENST00000550841 NPHP3Q7Z494 1330 aa29.88■■■□□ 2.37
NEK3-202ENST00000550841 FOXO3O43524 673 aa29.87■■■□□ 2.37
NEK3-202ENST00000550841 NGDNQ8NEJ9 315 aaKnown RBP29.87■■■□□ 2.37
NEK3-202ENST00000550841 ITSN1Q15811 1721 aa29.87■■■□□ 2.37
NEK3-202ENST00000550841 KIF1AQ12756 1690 aa29.86■■■□□ 2.37
NEK3-202ENST00000550841 POTEAQ6S8J7 498 aa29.86■■■□□ 2.37
NEK3-202ENST00000550841 CABP1Q9NZU7 370 aa29.86■■■□□ 2.37
NEK3-202ENST00000550841 PHLPP1O60346 1717 aa29.85■■■□□ 2.37
NEK3-202ENST00000550841 PSME1Q06323 249 aa29.85■■■□□ 2.37
NEK3-202ENST00000550841 PPIP5K1Q6PFW1 1433 aa29.85■■■□□ 2.37
NEK3-202ENST00000550841 TMC1Q8TDI8 760 aa29.82■■■□□ 2.36
NEK3-202ENST00000550841 NINLQ9Y2I6 1382 aa29.81■■■□□ 2.36
NEK3-202ENST00000550841 AHDC1Q5TGY3 1603 aaPredicted RBP29.81■■■□□ 2.36
NEK3-202ENST00000550841 ACEP12821 1306 aa29.8■■■□□ 2.36
NEK3-202ENST00000550841 KRT28Q7Z3Y7 464 aa29.8■■■□□ 2.36
NEK3-202ENST00000550841 ZNF692Q9BU19 519 aaPredicted RBP29.8■■■□□ 2.36
NEK3-202ENST00000550841 TOPAZ1Q8N9V7 1692 aa29.79■■■□□ 2.36
NEK3-202ENST00000550841 DDX17Q92841 729 aaKnown RBP29.79■■■□□ 2.36
NEK3-202ENST00000550841 POLR3AO14802 1390 aaPredicted RBP29.78■■■□□ 2.36
NEK3-202ENST00000550841 SOS2Q07890 1332 aaPredicted RBP29.78■■■□□ 2.36
NEK3-202ENST00000550841 LRRC59Q96AG4 307 aaKnown RBP29.78■■■□□ 2.36
NEK3-202ENST00000550841 NHSL1Q5SYE7 1610 aa29.78■■■□□ 2.36
NEK3-202ENST00000550841 POLR3GLQ9BT43 218 aa29.76■■■□□ 2.35
NEK3-202ENST00000550841 SLC12A5Q9H2X9 1139 aa29.76■■■□□ 2.35
NEK3-202ENST00000550841 TERF2IPQ9NYB0 399 aa29.76■■■□□ 2.35
NEK3-202ENST00000550841 SPATA31A6Q5VVP1 1343 aa29.75■■■□□ 2.35
NEK3-202ENST00000550841 MEX3CQ5U5Q3 659 aaKnown RBP29.75■■■□□ 2.35
NEK3-202ENST00000550841 HDGFL2Q7Z4V5 671 aaPredicted RBP29.75■■■□□ 2.35
NEK3-202ENST00000550841 C11orf95C9JLR9 678 aaPredicted RBP29.73■■■□□ 2.35
NEK3-202ENST00000550841 XPCQ01831 940 aaPredicted RBP29.72■■■□□ 2.35
NEK3-202ENST00000550841 BRD4O60885 1362 aaPredicted RBP29.72■■■□□ 2.35
NEK3-202ENST00000550841 COL16A1Q07092 1604 aaPredicted RBP29.71■■■□□ 2.35
NEK3-202ENST00000550841 PXDNQ92626 1479 aa29.7■■■□□ 2.35
NEK3-202ENST00000550841 SBNO1A3KN83 1393 aa29.7■■■□□ 2.35
NEK3-202ENST00000550841 KIF7Q2M1P5 1343 aa29.68■■■□□ 2.34
NEK3-202ENST00000550841 PAK3O75914 559 aaPredicted RBP29.67■■■□□ 2.34
NEK3-202ENST00000550841 CPSF1Q10570 1443 aaKnown RBP29.67■■■□□ 2.34
NEK3-202ENST00000550841 KTN1Q86UP2 1357 aaKnown RBP29.66■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms