RNA–Protein interactions for RNA: ENST00000549162.5

SCAF11-212, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 1 (best) BASIC

Gene SCAF11, Length 3,934 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-212ENST00000549162 KANK1Q14678 1352 aa7.45□□□□□ -1.22
SCAF11-212ENST00000549162 MAPK8IP2Q13387 824 aaPredicted RBP7.45□□□□□ -1.22
SCAF11-212ENST00000549162 SSH2Q76I76 1423 aa7.45□□□□□ -1.22
SCAF11-212ENST00000549162 LRPPRCP42704 1394 aaKnown RBP7.44□□□□□ -1.22
SCAF11-212ENST00000549162 SHANK3Q9BYB0 1731 aa7.43□□□□□ -1.22
SCAF11-212ENST00000549162 WASHC2AQ641Q2 1341 aa7.42□□□□□ -1.22
SCAF11-212ENST00000549162 WASHC2CQ9Y4E1 1318 aa7.42□□□□□ -1.22
SCAF11-212ENST00000549162 PKD2Q13563 968 aa7.42□□□□□ -1.22
SCAF11-212ENST00000549162 ROCK2O75116 1388 aaKnown RBP7.42□□□□□ -1.22
SCAF11-212ENST00000549162 ABCC11Q96J66 1382 aa7.41□□□□□ -1.22
SCAF11-212ENST00000549162 CFDP1Q9UEE9 299 aaPredicted RBP7.41□□□□□ -1.22
SCAF11-212ENST00000549162 PHLPP1O60346 1717 aa7.41□□□□□ -1.22
SCAF11-212ENST00000549162 SLC52A1Q9NWF4 448 aa7.4□□□□□ -1.22
SCAF11-212ENST00000549162 RIMS2Q9UQ26 1411 aa7.4□□□□□ -1.22
SCAF11-212ENST00000549162 CD163L1Q9NR16 1453 aa7.4□□□□□ -1.23
SCAF11-212ENST00000549162 CPSF1Q10570 1443 aaKnown RBP7.39□□□□□ -1.23
SCAF11-212ENST00000549162 TMEM132AQ24JP5 1023 aa7.39□□□□□ -1.23
SCAF11-212ENST00000549162 PAXIP1Q6ZW49 1069 aaPredicted RBP7.39□□□□□ -1.23
SCAF11-212ENST00000549162 SPAG9O60271 1321 aaKnown RBP7.39□□□□□ -1.23
SCAF11-212ENST00000549162 UBR2Q8IWV8 1755 aa7.39□□□□□ -1.23
SCAF11-212ENST00000549162 KIF24Q5T7B8 1368 aa7.39□□□□□ -1.23
SCAF11-212ENST00000549162 PTPRUQ92729 1446 aa7.39□□□□□ -1.23
SCAF11-212ENST00000549162 NSD2O96028 1365 aa7.38□□□□□ -1.23
SCAF11-212ENST00000549162 COL3A1P02461 1466 aaPredicted RBP7.38□□□□□ -1.23
SCAF11-212ENST00000549162 TMEM94Q12767 1356 aa7.37□□□□□ -1.23
SCAF11-212ENST00000549162 CFAP44Q96MT7 982 aa7.37□□□□□ -1.23
SCAF11-212ENST00000549162 EIF3AQ14152 1382 aaKnown RBP7.37□□□□□ -1.23
SCAF11-212ENST00000549162 IFNLR1Q8IU57 520 aaPredicted RBP7.36□□□□□ -1.23
SCAF11-212ENST00000549162 FBXO3Q9UK99 471 aa7.36□□□□□ -1.23
SCAF11-212ENST00000549162 ATF5Q9Y2D1 282 aaPredicted RBP7.36□□□□□ -1.23
SCAF11-212ENST00000549162 NPM1P06748 294 aaKnown RBP eCLIP7.36□□□□□ -1.23
SCAF11-212ENST00000549162 LAMB4A4D0S4 1761 aa7.35□□□□□ -1.23
SCAF11-212ENST00000549162 NFAT5O94916 1531 aa7.35□□□□□ -1.23
SCAF11-212ENST00000549162 ERICH6Q7L0X2 663 aa7.35□□□□□ -1.23
SCAF11-212ENST00000549162 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.35□□□□□ -1.23
SCAF11-212ENST00000549162 TMEM2Q9UHN6 1383 aa7.35□□□□□ -1.23
SCAF11-212ENST00000549162 VASPP50552 380 aaPredicted RBP7.35□□□□□ -1.23
SCAF11-212ENST00000549162 KDM3BQ7LBC6 1761 aa7.34□□□□□ -1.23
SCAF11-212ENST00000549162 OVOS2A0A0G2JMS6 1433 aa7.34□□□□□ -1.23
SCAF11-212ENST00000549162 BBXQ8WY36 941 aaPredicted RBP7.34□□□□□ -1.23
SCAF11-212ENST00000549162 TSHZ2Q9NRE2 1034 aa7.34□□□□□ -1.23
SCAF11-212ENST00000549162 POLR3AO14802 1390 aaPredicted RBP7.33□□□□□ -1.24
SCAF11-212ENST00000549162 COL16A1Q07092 1604 aaPredicted RBP7.33□□□□□ -1.24
SCAF11-212ENST00000549162 YTHDC2Q9H6S0 1430 aaKnown RBP7.33□□□□□ -1.24
SCAF11-212ENST00000549162 USP31Q70CQ4 1352 aa7.33□□□□□ -1.24
SCAF11-212ENST00000549162 TNRQ92752 1358 aa7.33□□□□□ -1.24
SCAF11-212ENST00000549162 ZMYM3Q14202 1370 aa7.32□□□□□ -1.24
SCAF11-212ENST00000549162 LTN1O94822 1766 aa7.32□□□□□ -1.24
SCAF11-212ENST00000549162 COL14A1Q05707 1796 aaKnown RBP7.32□□□□□ -1.24
SCAF11-212ENST00000549162 CACNA1FO60840 1977 aa7.32□□□□□ -1.24
SCAF11-212ENST00000549162 THSD7AQ9UPZ6 1657 aa7.32□□□□□ -1.24
SCAF11-212ENST00000549162 MPHOSPH9Q99550 1183 aa7.32□□□□□ -1.24
SCAF11-212ENST00000549162 DUOX1Q9NRD9 1551 aa7.31□□□□□ -1.24
SCAF11-212ENST00000549162 C14orf37Q86TY3 774 aa7.31□□□□□ -1.24
SCAF11-212ENST00000549162 MRC1P22897 1456 aa7.31□□□□□ -1.24
SCAF11-212ENST00000549162 RGPD8O14715 1765 aaPredicted RBP7.31□□□□□ -1.24
SCAF11-212ENST00000549162 PPP1R15AO75807 674 aaPredicted RBP7.29□□□□□ -1.24
SCAF11-212ENST00000549162 LAMB2P55268 1798 aa7.28□□□□□ -1.24
SCAF11-212ENST00000549162 ZNF644Q9H582 1327 aaPredicted RBP7.28□□□□□ -1.24
SCAF11-212ENST00000549162 PODXL2Q9NZ53 605 aa7.28□□□□□ -1.24
SCAF11-212ENST00000549162 NBR1Q14596 966 aa7.28□□□□□ -1.24
SCAF11-212ENST00000549162 BLMP54132 1417 aaPredicted RBP7.28□□□□□ -1.24
SCAF11-212ENST00000549162 ADGRL3Q9HAR2 1447 aa7.28□□□□□ -1.24
SCAF11-212ENST00000549162 C14orf93Q9H972 538 aaKnown RBP7.28□□□□□ -1.24
SCAF11-212ENST00000549162 PXDNQ92626 1479 aa7.27□□□□□ -1.25
SCAF11-212ENST00000549162 C5P01031 1676 aa7.27□□□□□ -1.25
SCAF11-212ENST00000549162 APLP2Q06481 763 aa7.27□□□□□ -1.25
SCAF11-212ENST00000549162 BCL9O00512 1426 aa7.27□□□□□ -1.25
SCAF11-212ENST00000549162 TSPY4P0CV99 314 aa7.27□□□□□ -1.25
SCAF11-212ENST00000549162 TSPY10P0CW01 314 aa7.27□□□□□ -1.25
SCAF11-212ENST00000549162 SCN11AQ9UI33 1791 aa7.27□□□□□ -1.25
SCAF11-212ENST00000549162 AATKQ6ZMQ8 1374 aa7.27□□□□□ -1.25
SCAF11-212ENST00000549162 C4AP0C0L4 1744 aa7.26□□□□□ -1.25
SCAF11-212ENST00000549162 C4BP0C0L5 1744 aa7.26□□□□□ -1.25
SCAF11-212ENST00000549162 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.25□□□□□ -1.25
SCAF11-212ENST00000549162 PNPLA6Q8IY17 1366 aa7.25□□□□□ -1.25
SCAF11-212ENST00000549162 PARD3Q8TEW0 1356 aa7.25□□□□□ -1.25
SCAF11-212ENST00000549162 RANGAP1P46060 587 aaPredicted RBP7.25□□□□□ -1.25
SCAF11-212ENST00000549162 MAP2P11137 1827 aaKnown RBP7.24□□□□□ -1.25
SCAF11-212ENST00000549162 OVOS2A0A0J9YW53 1432 aa7.24□□□□□ -1.25
SCAF11-212ENST00000549162 OVOS2Q6IE36 1432 aa7.24□□□□□ -1.25
SCAF11-212ENST00000549162 COL5A3P25940 1745 aaPredicted RBP7.23□□□□□ -1.25
SCAF11-212ENST00000549162 NPHP4O75161 1426 aaPredicted RBP7.23□□□□□ -1.25
SCAF11-212ENST00000549162 HOXD11P31277 338 aaPredicted RBP7.23□□□□□ -1.25
SCAF11-212ENST00000549162 TUBGCP6Q96RT7 1819 aa7.22□□□□□ -1.25
SCAF11-212ENST00000549162 LY75O60449 1722 aa7.22□□□□□ -1.25
SCAF11-212ENST00000549162 RTL1A6NKG5 1358 aa7.22□□□□□ -1.25
SCAF11-212ENST00000549162 PPIP5K1Q6PFW1 1433 aa7.22□□□□□ -1.25
SCAF11-212ENST00000549162 SPRYD3Q8NCJ5 442 aa7.22□□□□□ -1.25
SCAF11-212ENST00000549162 TBX22Q9Y458 520 aa7.22□□□□□ -1.25
SCAF11-212ENST00000549162 DLG5Q8TDM6 1919 aa7.21□□□□□ -1.25
SCAF11-212ENST00000549162 ROBO1Q9Y6N7 1651 aa7.21□□□□□ -1.25
SCAF11-212ENST00000549162 ARFGEF2Q9Y6D5 1785 aa7.21□□□□□ -1.25
SCAF11-212ENST00000549162 BCORQ6W2J9 1755 aa7.21□□□□□ -1.26
SCAF11-212ENST00000549162 LAMB1P07942 1786 aa7.21□□□□□ -1.26
SCAF11-212ENST00000549162 KIAA1551Q9HCM1 1747 aa7.21□□□□□ -1.26
SCAF11-212ENST00000549162 SBNO1A3KN83 1393 aa7.2□□□□□ -1.26
SCAF11-212ENST00000549162 RGS12O14924 1447 aa7.2□□□□□ -1.26
SCAF11-212ENST00000549162 SPDYE4A6NLX3 237 aa7.2□□□□□ -1.26
SCAF11-212ENST00000549162 NHSQ6T4R5 1651 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms