RNA–Protein interactions for RNA: ENST00000547654.5

SCAF11-210, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 416 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-210ENST00000547654 Q3C1V9 767 aa9.84□□□□□ -0.83
SCAF11-210ENST00000547654 RNF19BQ6ZMZ0 732 aa9.84□□□□□ -0.83
SCAF11-210ENST00000547654 AAASQ9NRG9 546 aa9.84□□□□□ -0.83
SCAF11-210ENST00000547654 MAP2K5Q13163 448 aa9.82□□□□□ -0.84
SCAF11-210ENST00000547654 TOR4AQ9NXH8 423 aa9.8□□□□□ -0.84
SCAF11-210ENST00000547654 TTC24A2A3L6 582 aaPredicted RBP9.79□□□□□ -0.84
SCAF11-210ENST00000547654 CD46P15529 392 aa9.79□□□□□ -0.84
SCAF11-210ENST00000547654 CRIPAKQ8N1N5 446 aa9.79□□□□□ -0.84
SCAF11-210ENST00000547654 AXIN1O15169 862 aa9.78□□□□□ -0.84
SCAF11-210ENST00000547654 KDM4AO75164 1064 aa9.78□□□□□ -0.84
SCAF11-210ENST00000547654 AVPP01185 164 aa9.77□□□□□ -0.85
SCAF11-210ENST00000547654 MDM2Q00987 491 aaPredicted RBP9.77□□□□□ -0.85
SCAF11-210ENST00000547654 TRIM32Q13049 653 aa9.77□□□□□ -0.85
SCAF11-210ENST00000547654 CTC1Q2NKJ3 1217 aa9.77□□□□□ -0.85
SCAF11-210ENST00000547654 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.77□□□□□ -0.85
SCAF11-210ENST00000547654 WFS1O76024 890 aa9.76□□□□□ -0.85
SCAF11-210ENST00000547654 USB1Q9BQ65 265 aaKnown RBP9.76□□□□□ -0.85
SCAF11-210ENST00000547654 WNT7AO00755 349 aa9.75□□□□□ -0.85
SCAF11-210ENST00000547654 MMP16P51512 607 aa9.75□□□□□ -0.85
SCAF11-210ENST00000547654 USP46P62068 366 aa9.75□□□□□ -0.85
SCAF11-210ENST00000547654 IRF6O14896 467 aa9.74□□□□□ -0.85
SCAF11-210ENST00000547654 DACH1Q9UI36 760 aa9.73□□□□□ -0.85
SCAF11-210ENST00000547654 C11orf95C9JLR9 678 aaPredicted RBP9.72□□□□□ -0.85
SCAF11-210ENST00000547654 DXOO77932 396 aaKnown RBP9.72□□□□□ -0.85
SCAF11-210ENST00000547654 CCDC24Q8N4L8 307 aa9.72□□□□□ -0.85
SCAF11-210ENST00000547654 SNIP1Q8TAD8 396 aaKnown RBP9.72□□□□□ -0.85
SCAF11-210ENST00000547654 GMPR2Q9P2T1 348 aaKnown RBP9.72□□□□□ -0.85
SCAF11-210ENST00000547654 MINK1Q8N4C8 1332 aaPredicted RBP9.72□□□□□ -0.85
SCAF11-210ENST00000547654 HOXA2O43364 376 aa9.71□□□□□ -0.86
SCAF11-210ENST00000547654 HLA-CQ95604 372 aa9.71□□□□□ -0.86
SCAF11-210ENST00000547654 CCDC102AQ96A19 550 aa9.71□□□□□ -0.86
SCAF11-210ENST00000547654 MRGPRX2Q96LB1 330 aa9.71□□□□□ -0.86
SCAF11-210ENST00000547654 REPIN1Q9BWE0 567 aaKnown RBP9.71□□□□□ -0.86
SCAF11-210ENST00000547654 SMCPP49901 116 aaPredicted RBP9.7□□□□□ -0.86
SCAF11-210ENST00000547654 WIPF1O43516 503 aa9.69□□□□□ -0.86
SCAF11-210ENST00000547654 CLCN1P35523 988 aa9.69□□□□□ -0.86
SCAF11-210ENST00000547654 INSM1Q01101 510 aaPredicted RBP9.69□□□□□ -0.86
SCAF11-210ENST00000547654 KRI1Q8N9T8 703 aaKnown RBP9.69□□□□□ -0.86
SCAF11-210ENST00000547654 GPCPD1Q9NPB8 672 aa9.69□□□□□ -0.86
SCAF11-210ENST00000547654 SMPD1P17405 629 aa9.68□□□□□ -0.86
SCAF11-210ENST00000547654 NFX1Q12986 1120 aaKnown RBP9.67□□□□□ -0.86
SCAF11-210ENST00000547654 NUTM1Q86Y26 1132 aa9.67□□□□□ -0.86
SCAF11-210ENST00000547654 GUCA2AQ02747 115 aa9.66□□□□□ -0.86
SCAF11-210ENST00000547654 J3QL48 77 aa9.65□□□□□ -0.86
SCAF11-210ENST00000547654 JUNDP17535 347 aa9.65□□□□□ -0.86
SCAF11-210ENST00000547654 WNT7BP56706 349 aa9.65□□□□□ -0.86
SCAF11-210ENST00000547654 RC3H1Q5TC82 1133 aaKnown RBP9.64□□□□□ -0.87
SCAF11-210ENST00000547654 ATP13A2Q9NQ11 1180 aa9.64□□□□□ -0.87
SCAF11-210ENST00000547654 FAM217BQ9NTX9 383 aaPredicted RBP9.64□□□□□ -0.87
SCAF11-210ENST00000547654 SUZ12Q15022 739 aaKnown RBP9.63□□□□□ -0.87
SCAF11-210ENST00000547654 LCE2CQ5TA81 110 aa9.63□□□□□ -0.87
SCAF11-210ENST00000547654 RETREG3Q86VR2 466 aa9.62□□□□□ -0.87
SCAF11-210ENST00000547654 SYMPKQ92797 1274 aaKnown RBP9.62□□□□□ -0.87
SCAF11-210ENST00000547654 NUDT12Q9BQG2 462 aa9.62□□□□□ -0.87
SCAF11-210ENST00000547654 SENP2Q9HC62 589 aa9.62□□□□□ -0.87
SCAF11-210ENST00000547654 ZMYND10O75800 440 aa9.61□□□□□ -0.87
SCAF11-210ENST00000547654 HPS1Q92902 700 aa9.61□□□□□ -0.87
SCAF11-210ENST00000547654 C6orf229H3BNL8 230 aa9.6□□□□□ -0.87
SCAF11-210ENST00000547654 SKOR1P84550 965 aa9.6□□□□□ -0.87
SCAF11-210ENST00000547654 ALDH1A1P00352 501 aa9.59□□□□□ -0.87
SCAF11-210ENST00000547654 FDX1P10109 184 aa9.59□□□□□ -0.87
SCAF11-210ENST00000547654 ZC3H15Q8WU90 426 aaKnown RBP9.59□□□□□ -0.87
SCAF11-210ENST00000547654 SNRPBP14678 240 aaKnown RBP9.58□□□□□ -0.88
SCAF11-210ENST00000547654 EHBP1Q8NDI1 1231 aa9.58□□□□□ -0.88
SCAF11-210ENST00000547654 TRIM47Q96LD4 638 aa9.58□□□□□ -0.88
SCAF11-210ENST00000547654 BARGINQ6ZT62 677 aa9.57□□□□□ -0.88
SCAF11-210ENST00000547654 KIFC2Q96AC6 838 aa9.57□□□□□ -0.88
SCAF11-210ENST00000547654 MS4A1P11836 297 aa9.56□□□□□ -0.88
SCAF11-210ENST00000547654 TTLL12Q14166 644 aaPredicted RBP9.56□□□□□ -0.88
SCAF11-210ENST00000547654 CCNYL3P0C7X3 344 aa9.55□□□□□ -0.88
SCAF11-210ENST00000547654 PCDHGC3Q9UN70 934 aa9.54□□□□□ -0.88
SCAF11-210ENST00000547654 WASF2Q9Y6W5 498 aa9.54□□□□□ -0.88
SCAF11-210ENST00000547654 SSTR3P32745 418 aaPredicted RBP9.53□□□□□ -0.88
SCAF11-210ENST00000547654 PTCRAQ6ISU1 281 aaPredicted RBP9.53□□□□□ -0.88
SCAF11-210ENST00000547654 TERTO14746 1132 aaKnown RBP9.52□□□□□ -0.89
SCAF11-210ENST00000547654 SPIRE2Q8WWL2 714 aa9.52□□□□□ -0.89
SCAF11-210ENST00000547654 PTPRNQ16849 979 aa9.51□□□□□ -0.89
SCAF11-210ENST00000547654 UNC93B1Q9H1C4 597 aa9.5□□□□□ -0.89
SCAF11-210ENST00000547654 CAPN5O15484 640 aaPredicted RBP9.49□□□□□ -0.89
SCAF11-210ENST00000547654 BMP1P13497 986 aa9.49□□□□□ -0.89
SCAF11-210ENST00000547654 NDUFV2P19404 249 aa9.49□□□□□ -0.89
SCAF11-210ENST00000547654 SH3BP2P78314 561 aa9.49□□□□□ -0.89
SCAF11-210ENST00000547654 LINC01559Q495D7 138 aa9.49□□□□□ -0.89
SCAF11-210ENST00000547654 MOXD2PA6NHM9 499 aa9.48□□□□□ -0.89
SCAF11-210ENST00000547654 SIAH2O43255 324 aa9.48□□□□□ -0.89
SCAF11-210ENST00000547654 MTMR2Q13614 643 aa9.48□□□□□ -0.89
SCAF11-210ENST00000547654 PRR7Q8TB68 274 aa9.48□□□□□ -0.89
SCAF11-210ENST00000547654 GIGYF2Q6Y7W6 1299 aaKnown RBP9.47□□□□□ -0.89
SCAF11-210ENST00000547654 TLL2Q9Y6L7 1015 aa9.47□□□□□ -0.89
SCAF11-210ENST00000547654 SPDYE5A6NIY4 337 aa9.46□□□□□ -0.9
SCAF11-210ENST00000547654 KCNH2Q12809 1159 aa9.46□□□□□ -0.9
SCAF11-210ENST00000547654 AMHR2Q16671 573 aa9.46□□□□□ -0.9
SCAF11-210ENST00000547654 EVA1BQ9NVM1 165 aa9.46□□□□□ -0.9
SCAF11-210ENST00000547654 SLC16A10Q8TF71 515 aa9.45□□□□□ -0.9
SCAF11-210ENST00000547654 BAP1Q92560 729 aa9.45□□□□□ -0.9
SCAF11-210ENST00000547654 DESI1Q6ICB0 168 aa9.44□□□□□ -0.9
SCAF11-210ENST00000547654 ZNF511Q8NB15 262 aa9.44□□□□□ -0.9
SCAF11-210ENST00000547654 BEGAINQ9BUH8 593 aa9.44□□□□□ -0.9
SCAF11-210ENST00000547654 PLEKHG3A1L390 1219 aa9.43□□□□□ -0.9
SCAF11-210ENST00000547654 CTHP32929 405 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms