RNA–Protein interactions for RNA: ENST00000545042.1

DDX55-213, Transcript of DEAD-box helicase 55, humanhuman

TSL 5

Gene DDX55, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-213ENST00000545042 PRAM1Q96QH2 718 aa19.14■□□□□ 0.65
DDX55-213ENST00000545042 SIN3AQ96ST3 1273 aa19.14■□□□□ 0.65
DDX55-213ENST00000545042 JCADQ9P266 1359 aa19.14■□□□□ 0.65
DDX55-213ENST00000545042 ADGRB1O14514 1584 aa19.14■□□□□ 0.65
DDX55-213ENST00000545042 TRAK1Q9UPV9 953 aa19.13■□□□□ 0.65
DDX55-213ENST00000545042 DLC1Q96QB1 1528 aa19.13■□□□□ 0.65
DDX55-213ENST00000545042 COL16A1Q07092 1604 aaPredicted RBP19.12■□□□□ 0.65
DDX55-213ENST00000545042 PHF23Q9BUL5 403 aaPredicted RBP19.12■□□□□ 0.65
DDX55-213ENST00000545042 SAFB2Q14151 953 aaKnown RBP eCLIP19.11■□□□□ 0.65
DDX55-213ENST00000545042 L3MBTL2Q969R5 705 aa19.11■□□□□ 0.65
DDX55-213ENST00000545042 ORAI2Q96SN7 254 aa19.1■□□□□ 0.65
DDX55-213ENST00000545042 ESCO1Q5FWF5 840 aa19.09■□□□□ 0.65
DDX55-213ENST00000545042 NHSL1Q5SYE7 1610 aa19.08■□□□□ 0.65
DDX55-213ENST00000545042 KIAA1210Q9ULL0 1709 aa19.08■□□□□ 0.64
DDX55-213ENST00000545042 NUTM2FA1L443 756 aa19.07■□□□□ 0.64
DDX55-213ENST00000545042 LRRC59Q96AG4 307 aaKnown RBP19.07■□□□□ 0.64
DDX55-213ENST00000545042 SPATA31A6Q5VVP1 1343 aa19.05■□□□□ 0.64
DDX55-213ENST00000545042 DDX17Q92841 729 aaKnown RBP19.05■□□□□ 0.64
DDX55-213ENST00000545042 FMN2Q9NZ56 1722 aa19.05■□□□□ 0.64
DDX55-213ENST00000545042 NPHP3Q7Z494 1330 aa19.03■□□□□ 0.64
DDX55-213ENST00000545042 MINK1Q8N4C8 1332 aaPredicted RBP19.02■□□□□ 0.64
DDX55-213ENST00000545042 SHPRHQ149N8 1683 aa19.02■□□□□ 0.64
DDX55-213ENST00000545042 NBPF1Q3BBV0 1214 aa19.02■□□□□ 0.64
DDX55-213ENST00000545042 EIF3AQ14152 1382 aaKnown RBP19.02■□□□□ 0.64
DDX55-213ENST00000545042 SOS2Q07890 1332 aaPredicted RBP19.01■□□□□ 0.63
DDX55-213ENST00000545042 HIRIP3Q9BW71 556 aaPredicted RBP19.01■□□□□ 0.63
DDX55-213ENST00000545042 TONSLQ96HA7 1378 aa19.01■□□□□ 0.63
DDX55-213ENST00000545042 ADGRB2O60241 1585 aa19.01■□□□□ 0.63
DDX55-213ENST00000545042 ARHGEF28Q8N1W1 1705 aaKnown RBP19■□□□□ 0.63
DDX55-213ENST00000545042 FOXO3O43524 673 aa19■□□□□ 0.63
DDX55-213ENST00000545042 MEX3CQ5U5Q3 659 aaKnown RBP19■□□□□ 0.63
DDX55-213ENST00000545042 PCGF6Q9BYE7 350 aa19■□□□□ 0.63
DDX55-213ENST00000545042 ANKARQ7Z5J8 1434 aa18.99■□□□□ 0.63
DDX55-213ENST00000545042 WASLO00401 505 aaPredicted RBP18.98■□□□□ 0.63
DDX55-213ENST00000545042 ILDR2Q71H61 639 aa18.98■□□□□ 0.63
DDX55-213ENST00000545042 PHF8Q9UPP1 1060 aa18.98■□□□□ 0.63
DDX55-213ENST00000545042 KIF1AQ12756 1690 aa18.98■□□□□ 0.63
DDX55-213ENST00000545042 NUTM2BA6NNL0 878 aaPredicted RBP18.97■□□□□ 0.63
DDX55-213ENST00000545042 NUTM2EB1AL46 878 aaPredicted RBP18.97■□□□□ 0.63
DDX55-213ENST00000545042 NUTM2AQ8IVF1 878 aaPredicted RBP18.97■□□□□ 0.63
DDX55-213ENST00000545042 ROCK2O75116 1388 aaKnown RBP18.96■□□□□ 0.63
DDX55-213ENST00000545042 PNPLA6Q8IY17 1366 aa18.96■□□□□ 0.63
DDX55-213ENST00000545042 XPCQ01831 940 aaPredicted RBP18.95■□□□□ 0.62
DDX55-213ENST00000545042 TRPM1Q7Z4N2 1603 aa18.95■□□□□ 0.62
DDX55-213ENST00000545042 CENPJQ9HC77 1338 aaPredicted RBP18.94■□□□□ 0.62
DDX55-213ENST00000545042 TULP4Q9NRJ4 1543 aa18.94■□□□□ 0.62
DDX55-213ENST00000545042 RGPD8O14715 1765 aaPredicted RBP18.93■□□□□ 0.62
DDX55-213ENST00000545042 LRP6O75581 1613 aa18.93■□□□□ 0.62
DDX55-213ENST00000545042 PXDNQ92626 1479 aa18.93■□□□□ 0.62
DDX55-213ENST00000545042 PSME1Q06323 249 aa18.93■□□□□ 0.62
DDX55-213ENST00000545042 KRT28Q7Z3Y7 464 aa18.93■□□□□ 0.62
DDX55-213ENST00000545042 NBPF8Q3BBV2 869 aa18.91■□□□□ 0.62
DDX55-213ENST00000545042 PMFBP1Q8TBY8 1022 aa18.91■□□□□ 0.62
DDX55-213ENST00000545042 CDK19Q9BWU1 502 aa18.91■□□□□ 0.62
DDX55-213ENST00000545042 RGS17Q9UGC6 210 aaPredicted RBP18.91■□□□□ 0.62
DDX55-213ENST00000545042 USP32Q8NFA0 1604 aa18.9■□□□□ 0.62
DDX55-213ENST00000545042 NUDT16Q96DE0 195 aaKnown RBP18.89■□□□□ 0.61
DDX55-213ENST00000545042 PRR36Q9H6K5 1346 aa18.89■□□□□ 0.61
DDX55-213ENST00000545042 ZNF772Q68DY9 489 aaPredicted RBP18.88■□□□□ 0.61
DDX55-213ENST00000545042 SPATA31A3Q5VYP0 1347 aa18.88■□□□□ 0.61
DDX55-213ENST00000545042 CLSPNQ9HAW4 1339 aa18.88■□□□□ 0.61
DDX55-213ENST00000545042 GPRASP1Q5JY77 1395 aa18.88■□□□□ 0.61
DDX55-213ENST00000545042 NGDNQ8NEJ9 315 aaKnown RBP18.87■□□□□ 0.61
DDX55-213ENST00000545042 SBNO1A3KN83 1393 aa18.86■□□□□ 0.61
DDX55-213ENST00000545042 ADAMTS2O95450 1211 aa18.86■□□□□ 0.61
DDX55-213ENST00000545042 SRPK2P78362 688 aaKnown RBP18.86■□□□□ 0.61
DDX55-213ENST00000545042 CARD11Q9BXL7 1154 aa18.86■□□□□ 0.61
DDX55-213ENST00000545042 ITSN1Q15811 1721 aa18.86■□□□□ 0.61
DDX55-213ENST00000545042 QRICH2Q9H0J4 1663 aa18.85■□□□□ 0.61
DDX55-213ENST00000545042 COL22A1Q8NFW1 1626 aaPredicted RBP18.85■□□□□ 0.61
DDX55-213ENST00000545042 ATP7BP35670 1465 aa18.85■□□□□ 0.61
DDX55-213ENST00000545042 C8orf37Q96NL8 207 aa18.85■□□□□ 0.61
DDX55-213ENST00000545042 CCDC61Q9Y6R9 512 aa18.85■□□□□ 0.61
DDX55-213ENST00000545042 RALGAPBQ86X10 1494 aa18.84■□□□□ 0.61
DDX55-213ENST00000545042 TNS3Q68CZ2 1445 aa18.84■□□□□ 0.61
DDX55-213ENST00000545042 SOCS7O14512 581 aa18.84■□□□□ 0.61
DDX55-213ENST00000545042 LMOD2Q6P5Q4 547 aa18.84■□□□□ 0.61
DDX55-213ENST00000545042 POTEAQ6S8J7 498 aa18.84■□□□□ 0.61
DDX55-213ENST00000545042 ARHGEF10O15013 1369 aa18.83■□□□□ 0.61
DDX55-213ENST00000545042 EVC2Q86UK5 1308 aa18.83■□□□□ 0.61
DDX55-213ENST00000545042 NGLY1Q96IV0 654 aa18.83■□□□□ 0.6
DDX55-213ENST00000545042 AFF2P51816 1311 aa18.82■□□□□ 0.6
DDX55-213ENST00000545042 HAP1P54257 671 aaPredicted RBP18.82■□□□□ 0.6
DDX55-213ENST00000545042 CABP2Q9NPB3 220 aa18.81■□□□□ 0.6
DDX55-213ENST00000545042 TIMELESSQ9UNS1 1208 aa18.81■□□□□ 0.6
DDX55-213ENST00000545042 CCER1Q8TC90 406 aaPredicted RBP18.8■□□□□ 0.6
DDX55-213ENST00000545042 PLEKHG3A1L390 1219 aa18.79■□□□□ 0.6
DDX55-213ENST00000545042 PAK3O75914 559 aaPredicted RBP18.79■□□□□ 0.6
DDX55-213ENST00000545042 ACEP12821 1306 aa18.77■□□□□ 0.6
DDX55-213ENST00000545042 PPIP5K1Q6PFW1 1433 aa18.77■□□□□ 0.6
DDX55-213ENST00000545042 TOPAZ1Q8N9V7 1692 aa18.77■□□□□ 0.6
DDX55-213ENST00000545042 PLEKHG5O94827 1062 aa18.77■□□□□ 0.6
DDX55-213ENST00000545042 POLR3AO14802 1390 aaPredicted RBP18.77■□□□□ 0.6
DDX55-213ENST00000545042 TRPM3Q9HCF6 1732 aaPredicted RBP18.76■□□□□ 0.59
DDX55-213ENST00000545042 RXRBP28702 533 aa18.75■□□□□ 0.59
DDX55-213ENST00000545042 USP21Q9UK80 565 aa18.75■□□□□ 0.59
DDX55-213ENST00000545042 SBNO2Q9Y2G9 1366 aa18.75■□□□□ 0.59
DDX55-213ENST00000545042 FNBP4Q8N3X1 1017 aaPredicted RBP18.74■□□□□ 0.59
DDX55-213ENST00000545042 CABLES1Q8TDN4 633 aa18.74■□□□□ 0.59
DDX55-213ENST00000545042 QTRT2Q9H974 415 aaKnown RBP18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 177.1 ms