RNA–Protein interactions for RNA: ENST00000544506.1

LEMD3-205, Transcript of LEM domain containing 3, human

TSL 5

Gene LEMD3, Length 412 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LEMD3-205	ENST00000544506	TJAP1	Q5JTD0	557 aa		11.24	□□□□□ -0.61
LEMD3-205	ENST00000544506	PRPF38B	Q5VTL8	546 aa	Known RBP	11.24	□□□□□ -0.61
LEMD3-205	ENST00000544506	SYMPK	Q92797	1274 aa	Known RBP	11.24	□□□□□ -0.61
LEMD3-205	ENST00000544506	ZBTB3	Q9H5J0	574 aa		11.24	□□□□□ -0.61
LEMD3-205	ENST00000544506	C6orf229	H3BNL8	230 aa		11.23	□□□□□ -0.61
LEMD3-205	ENST00000544506	HRC	P23327	699 aa		11.23	□□□□□ -0.61
LEMD3-205	ENST00000544506	MTMR2	Q13614	643 aa		11.23	□□□□□ -0.61
LEMD3-205	ENST00000544506		Q3C1V9	767 aa		11.23	□□□□□ -0.61
LEMD3-205	ENST00000544506	THAP11	Q96EK4	314 aa		11.22	□□□□□ -0.61
LEMD3-205	ENST00000544506	IL21	Q9HBE4	155 aa		11.22	□□□□□ -0.61
LEMD3-205	ENST00000544506	TLL1	O43897	1013 aa		11.21	□□□□□ -0.61
LEMD3-205	ENST00000544506	ZPR1	O75312	459 aa		11.21	□□□□□ -0.61
LEMD3-205	ENST00000544506	PPP2R2D	Q66LE6	453 aa		11.21	□□□□□ -0.61
LEMD3-205	ENST00000544506	BRICD5	Q6PL45	260 aa		11.21	□□□□□ -0.61
LEMD3-205	ENST00000544506	ZNF516	Q92618	1163 aa		11.21	□□□□□ -0.61
LEMD3-205	ENST00000544506	SALL2	Q9Y467	1007 aa	Predicted RBP	11.21	□□□□□ -0.61
LEMD3-205	ENST00000544506	NUTM2B	A6NNL0	878 aa	Predicted RBP	11.2	□□□□□ -0.62
LEMD3-205	ENST00000544506	NUTM2E	B1AL46	878 aa	Predicted RBP	11.2	□□□□□ -0.62
LEMD3-205	ENST00000544506	FMNL1	O95466	1100 aa	Predicted RBP	11.2	□□□□□ -0.62
LEMD3-205	ENST00000544506	RTL5	Q5HYW3	569 aa	Predicted RBP	11.2	□□□□□ -0.62
LEMD3-205	ENST00000544506	NUTM2D	Q5VT03	806 aa	Predicted RBP	11.2	□□□□□ -0.62
LEMD3-205	ENST00000544506	NUTM2A	Q8IVF1	878 aa	Predicted RBP	11.2	□□□□□ -0.62
LEMD3-205	ENST00000544506	RFC5	P40937	340 aa		11.19	□□□□□ -0.62
LEMD3-205	ENST00000544506	RETREG3	Q86VR2	466 aa		11.18	□□□□□ -0.62
LEMD3-205	ENST00000544506	GTF3C3	Q9Y5Q9	886 aa		11.18	□□□□□ -0.62
LEMD3-205	ENST00000544506	SPDYE5	A6NIY4	337 aa		11.17	□□□□□ -0.62
LEMD3-205	ENST00000544506	ITGBL1	O95965	494 aa	Predicted RBP	11.17	□□□□□ -0.62
LEMD3-205	ENST00000544506	SPSB2	Q99619	263 aa		11.17	□□□□□ -0.62
LEMD3-205	ENST00000544506	CFAP99	D6REC4	459 aa		11.16	□□□□□ -0.62
LEMD3-205	ENST00000544506	USB1	Q9BQ65	265 aa	Known RBP	11.16	□□□□□ -0.62
LEMD3-205	ENST00000544506	ADH1B	P00325	375 aa		11.15	□□□□□ -0.62
LEMD3-205	ENST00000544506	PRR7	Q8TB68	274 aa		11.15	□□□□□ -0.62
LEMD3-205	ENST00000544506	KCNC4	Q03721	635 aa		11.14	□□□□□ -0.63
LEMD3-205	ENST00000544506	FAM160A2	Q8N612	972 aa	Predicted RBP	11.13	□□□□□ -0.63
LEMD3-205	ENST00000544506	NKX2-3	Q8TAU0	364 aa		11.13	□□□□□ -0.63
LEMD3-205	ENST00000544506	MSS51	Q4VC12	460 aa		11.12	□□□□□ -0.63
LEMD3-205	ENST00000544506	TSC1	Q92574	1164 aa		11.12	□□□□□ -0.63
LEMD3-205	ENST00000544506	PRDM9	Q9NQV7	894 aa		11.12	□□□□□ -0.63
LEMD3-205	ENST00000544506	AP1G2	O75843	785 aa		11.11	□□□□□ -0.63
LEMD3-205	ENST00000544506	TMEM259	Q4ZIN3	620 aa		11.1	□□□□□ -0.63
LEMD3-205	ENST00000544506	HELB	Q8NG08	1087 aa	Predicted RBP	11.1	□□□□□ -0.63
LEMD3-205	ENST00000544506	JUND	P17535	347 aa		11.09	□□□□□ -0.63
LEMD3-205	ENST00000544506	DESI1	Q6ICB0	168 aa		11.08	□□□□□ -0.64
LEMD3-205	ENST00000544506	SLC6A16	Q9GZN6	736 aa		11.08	□□□□□ -0.64
LEMD3-205	ENST00000544506	S1PR4	O95977	384 aa		11.07	□□□□□ -0.64
LEMD3-205	ENST00000544506	USP17L8	P0C7I0	530 aa		11.07	□□□□□ -0.64
LEMD3-205	ENST00000544506	CTDSPL2	Q05D32	466 aa		11.07	□□□□□ -0.64
LEMD3-205	ENST00000544506	BANK1	Q8NDB2	785 aa		11.07	□□□□□ -0.64
LEMD3-205	ENST00000544506	DXO	O77932	396 aa	Known RBP	11.06	□□□□□ -0.64
LEMD3-205	ENST00000544506	PLSCR2	Q9NRY7	297 aa		11.06	□□□□□ -0.64
LEMD3-205	ENST00000544506	MMP16	P51512	607 aa		11.05	□□□□□ -0.64
LEMD3-205	ENST00000544506	PER1	O15534	1290 aa	Predicted RBP	11.04	□□□□□ -0.64
LEMD3-205	ENST00000544506	MCM6	Q14566	821 aa		11.03	□□□□□ -0.64
LEMD3-205	ENST00000544506	LYPD8	Q6UX82	237 aa		11.03	□□□□□ -0.64
LEMD3-205	ENST00000544506	LRRN4	Q8WUT4	740 aa		11.03	□□□□□ -0.64
LEMD3-205	ENST00000544506	SNRK	Q9NRH2	765 aa		11.03	□□□□□ -0.64
LEMD3-205	ENST00000544506	PTPRN	Q16849	979 aa		11.02	□□□□□ -0.65
LEMD3-205	ENST00000544506	PLA2G2E	Q9NZK7	142 aa		11.02	□□□□□ -0.65
LEMD3-205	ENST00000544506	FLII	Q13045	1269 aa		11.01	□□□□□ -0.65
LEMD3-205	ENST00000544506	IFFO2	Q5TF58	517 aa		11.01	□□□□□ -0.65
LEMD3-205	ENST00000544506	MTMR14	Q8NCE2	650 aa		11.01	□□□□□ -0.65
LEMD3-205	ENST00000544506	HMX1	Q9NP08	348 aa	Predicted RBP	11.01	□□□□□ -0.65
LEMD3-205	ENST00000544506	NUDT12	Q9BQG2	462 aa		11	□□□□□ -0.65
LEMD3-205	ENST00000544506	PPP1R18	Q6NYC8	613 aa		10.99	□□□□□ -0.65
LEMD3-205	ENST00000544506	PPEF1	O14829	653 aa	Predicted RBP	10.98	□□□□□ -0.65
LEMD3-205	ENST00000544506	CCNYL3	P0C7X3	344 aa		10.98	□□□□□ -0.65
LEMD3-205	ENST00000544506	GGCX	P38435	758 aa		10.98	□□□□□ -0.65
LEMD3-205	ENST00000544506	FCF1	Q9Y324	198 aa	Known RBP	10.98	□□□□□ -0.65
LEMD3-205	ENST00000544506	RNF223	E7ERA6	249 aa		10.97	□□□□□ -0.65
LEMD3-205	ENST00000544506	SOCS7	O14512	581 aa		10.97	□□□□□ -0.65
LEMD3-205	ENST00000544506	F12	P00748	615 aa	Predicted RBP	10.97	□□□□□ -0.65
LEMD3-205	ENST00000544506	CCDC24	Q8N4L8	307 aa		10.96	□□□□□ -0.65
LEMD3-205	ENST00000544506	GJD4	Q96KN9	370 aa	Predicted RBP	10.96	□□□□□ -0.65
LEMD3-205	ENST00000544506	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	10.96	□□□□□ -0.65
LEMD3-205	ENST00000544506	MAP10	Q9P2G4	905 aa		10.96	□□□□□ -0.65
LEMD3-205	ENST00000544506	CTH	P32929	405 aa		10.94	□□□□□ -0.66
LEMD3-205	ENST00000544506	NR6A1	Q15406	480 aa		10.94	□□□□□ -0.66
LEMD3-205	ENST00000544506	ANKLE1	Q8NAG6	615 aa		10.94	□□□□□ -0.66
LEMD3-205	ENST00000544506	EPS8L1	Q8TE68	723 aa		10.94	□□□□□ -0.66
LEMD3-205	ENST00000544506	TRIM34	Q9BYJ4	488 aa		10.94	□□□□□ -0.66
LEMD3-205	ENST00000544506	EVA1B	Q9NVM1	165 aa		10.94	□□□□□ -0.66
LEMD3-205	ENST00000544506	KCNH2	Q12809	1159 aa		10.93	□□□□□ -0.66
LEMD3-205	ENST00000544506		A0A0G2JS52	829 aa		10.92	□□□□□ -0.66
LEMD3-205	ENST00000544506	APBB1	O00213	710 aa		10.92	□□□□□ -0.66
LEMD3-205	ENST00000544506	UBTF	P17480	764 aa	Known RBP	10.92	□□□□□ -0.66
LEMD3-205	ENST00000544506	PLA2G2C	Q5R387	149 aa		10.91	□□□□□ -0.66
LEMD3-205	ENST00000544506	PTCRA	Q6ISU1	281 aa	Predicted RBP	10.91	□□□□□ -0.66
LEMD3-205	ENST00000544506	C14orf37	Q86TY3	774 aa		10.9	□□□□□ -0.66
LEMD3-205	ENST00000544506	POM121	Q96HA1	1249 aa		10.89	□□□□□ -0.67
LEMD3-205	ENST00000544506	UNC93B1	Q9H1C4	597 aa		10.89	□□□□□ -0.67
LEMD3-205	ENST00000544506	TBC1D2B	Q9UPU7	963 aa		10.89	□□□□□ -0.67
LEMD3-205	ENST00000544506	NDUFB9	Q9Y6M9	179 aa		10.89	□□□□□ -0.67
LEMD3-205	ENST00000544506	TIMELESS	Q9UNS1	1208 aa		10.88	□□□□□ -0.67
LEMD3-205	ENST00000544506	COG6	Q9Y2V7	657 aa		10.88	□□□□□ -0.67
LEMD3-205	ENST00000544506	CLUAP1	Q96AJ1	413 aa		10.87	□□□□□ -0.67
LEMD3-205	ENST00000544506	GDPD2	Q9HCC8	539 aa		10.87	□□□□□ -0.67
LEMD3-205	ENST00000544506	GPR37L1	O60883	481 aa		10.86	□□□□□ -0.67
LEMD3-205	ENST00000544506	PRM3	Q9NNZ6	103 aa		10.85	□□□□□ -0.67
LEMD3-205	ENST00000544506	FKBPL	Q9UIM3	349 aa		10.85	□□□□□ -0.67
LEMD3-205	ENST00000544506	RAD21	O60216	631 aa		10.84	□□□□□ -0.67

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