RNA–Protein interactions for RNA: ENST00000542002.5

YBX3-212, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-212ENST00000542002 SAFB2Q14151 953 aaKnown RBP eCLIP14.09□□□□□ -0.15
YBX3-212ENST00000542002 DDX17Q92841 729 aaKnown RBP14.09□□□□□ -0.15
YBX3-212ENST00000542002 PRAM1Q96QH2 718 aa14.09□□□□□ -0.15
YBX3-212ENST00000542002 ROBO1Q9Y6N7 1651 aa14.08□□□□□ -0.16
YBX3-212ENST00000542002 ORAI2Q96SN7 254 aa14.08□□□□□ -0.16
YBX3-212ENST00000542002 NALCNQ8IZF0 1738 aa14.07□□□□□ -0.16
YBX3-212ENST00000542002 C1orf167Q5SNV9 1468 aa14.06□□□□□ -0.16
YBX3-212ENST00000542002 NUTM2FA1L443 756 aa14.06□□□□□ -0.16
YBX3-212ENST00000542002 NBPF8Q3BBV2 869 aa14.06□□□□□ -0.16
YBX3-212ENST00000542002 POGKQ9P215 609 aa14.04□□□□□ -0.16
YBX3-212ENST00000542002 HIRIP3Q9BW71 556 aaPredicted RBP14.03□□□□□ -0.16
YBX3-212ENST00000542002 LAMC1P11047 1609 aa14.03□□□□□ -0.16
YBX3-212ENST00000542002 ESCO1Q5FWF5 840 aa14.02□□□□□ -0.17
YBX3-212ENST00000542002 KNDC1Q76NI1 1749 aa14.01□□□□□ -0.17
YBX3-212ENST00000542002 DLC1Q96QB1 1528 aa14.01□□□□□ -0.17
YBX3-212ENST00000542002 MINK1Q8N4C8 1332 aaPredicted RBP14.01□□□□□ -0.17
YBX3-212ENST00000542002 DISP3Q9P2K9 1392 aa13.99□□□□□ -0.17
YBX3-212ENST00000542002 CDC42BPGQ6DT37 1551 aa13.98□□□□□ -0.17
YBX3-212ENST00000542002 FOXO3O43524 673 aa13.98□□□□□ -0.17
YBX3-212ENST00000542002 COL16A1Q07092 1604 aaPredicted RBP13.97□□□□□ -0.17
YBX3-212ENST00000542002 AHDC1Q5TGY3 1603 aaPredicted RBP13.97□□□□□ -0.17
YBX3-212ENST00000542002 WASLO00401 505 aaPredicted RBP13.97□□□□□ -0.17
YBX3-212ENST00000542002 XPCQ01831 940 aaPredicted RBP13.97□□□□□ -0.17
YBX3-212ENST00000542002 TONSLQ96HA7 1378 aa13.96□□□□□ -0.17
YBX3-212ENST00000542002 JCADQ9P266 1359 aa13.96□□□□□ -0.17
YBX3-212ENST00000542002 SOS2Q07890 1332 aaPredicted RBP13.96□□□□□ -0.17
YBX3-212ENST00000542002 PRR36Q9H6K5 1346 aa13.96□□□□□ -0.17
YBX3-212ENST00000542002 PHLPP1O60346 1717 aa13.96□□□□□ -0.17
YBX3-212ENST00000542002 ILDR2Q71H61 639 aa13.95□□□□□ -0.18
YBX3-212ENST00000542002 LRRC59Q96AG4 307 aaKnown RBP13.95□□□□□ -0.18
YBX3-212ENST00000542002 RGS17Q9UGC6 210 aaPredicted RBP13.95□□□□□ -0.18
YBX3-212ENST00000542002 KIAA1210Q9ULL0 1709 aa13.95□□□□□ -0.18
YBX3-212ENST00000542002 CDK19Q9BWU1 502 aa13.94□□□□□ -0.18
YBX3-212ENST00000542002 MED1Q15648 1581 aaPredicted RBP13.93□□□□□ -0.18
YBX3-212ENST00000542002 PMFBP1Q8TBY8 1022 aa13.93□□□□□ -0.18
YBX3-212ENST00000542002 PHF8Q9UPP1 1060 aa13.93□□□□□ -0.18
YBX3-212ENST00000542002 ROCK2O75116 1388 aaKnown RBP13.93□□□□□ -0.18
YBX3-212ENST00000542002 FMN2Q9NZ56 1722 aa13.92□□□□□ -0.18
YBX3-212ENST00000542002 CENPJQ9HC77 1338 aaPredicted RBP13.91□□□□□ -0.18
YBX3-212ENST00000542002 NHSL1Q5SYE7 1610 aa13.91□□□□□ -0.18
YBX3-212ENST00000542002 TRPM1Q7Z4N2 1603 aa13.91□□□□□ -0.18
YBX3-212ENST00000542002 ARHGEF28Q8N1W1 1705 aaKnown RBP13.91□□□□□ -0.18
YBX3-212ENST00000542002 KRT28Q7Z3Y7 464 aa13.91□□□□□ -0.18
YBX3-212ENST00000542002 NUDT16Q96DE0 195 aaKnown RBP13.91□□□□□ -0.18
YBX3-212ENST00000542002 GPRASP1Q5JY77 1395 aa13.91□□□□□ -0.18
YBX3-212ENST00000542002 PNPLA6Q8IY17 1366 aa13.91□□□□□ -0.18
YBX3-212ENST00000542002 NPHP3Q7Z494 1330 aa13.9□□□□□ -0.18
YBX3-212ENST00000542002 LRP6O75581 1613 aa13.9□□□□□ -0.18
YBX3-212ENST00000542002 USP32Q8NFA0 1604 aa13.9□□□□□ -0.18
YBX3-212ENST00000542002 NUTM2BA6NNL0 878 aaPredicted RBP13.9□□□□□ -0.18
YBX3-212ENST00000542002 NUTM2EB1AL46 878 aaPredicted RBP13.9□□□□□ -0.18
YBX3-212ENST00000542002 NUTM2AQ8IVF1 878 aaPredicted RBP13.9□□□□□ -0.18
YBX3-212ENST00000542002 CCER1Q8TC90 406 aaPredicted RBP13.9□□□□□ -0.18
YBX3-212ENST00000542002 CARD11Q9BXL7 1154 aa13.9□□□□□ -0.18
YBX3-212ENST00000542002 PXDNQ92626 1479 aa13.9□□□□□ -0.18
YBX3-212ENST00000542002 ADGRB2O60241 1585 aa13.9□□□□□ -0.18
YBX3-212ENST00000542002 SPATA31A6Q5VVP1 1343 aa13.9□□□□□ -0.19
YBX3-212ENST00000542002 CLSPNQ9HAW4 1339 aa13.9□□□□□ -0.19
YBX3-212ENST00000542002 CABP2Q9NPB3 220 aa13.89□□□□□ -0.19
YBX3-212ENST00000542002 ANKARQ7Z5J8 1434 aa13.89□□□□□ -0.19
YBX3-212ENST00000542002 PSME1Q06323 249 aa13.88□□□□□ -0.19
YBX3-212ENST00000542002 SPATA31A3Q5VYP0 1347 aa13.87□□□□□ -0.19
YBX3-212ENST00000542002 RGPD8O14715 1765 aaPredicted RBP13.86□□□□□ -0.19
YBX3-212ENST00000542002 TULP4Q9NRJ4 1543 aa13.86□□□□□ -0.19
YBX3-212ENST00000542002 POTEAQ6S8J7 498 aa13.86□□□□□ -0.19
YBX3-212ENST00000542002 TIMELESSQ9UNS1 1208 aa13.86□□□□□ -0.19
YBX3-212ENST00000542002 RALGAPBQ86X10 1494 aa13.86□□□□□ -0.19
YBX3-212ENST00000542002 SRPK2P78362 688 aaKnown RBP13.85□□□□□ -0.19
YBX3-212ENST00000542002 CCDC61Q9Y6R9 512 aa13.85□□□□□ -0.19
YBX3-212ENST00000542002 ATP7BP35670 1465 aa13.85□□□□□ -0.19
YBX3-212ENST00000542002 PLEKHG3A1L390 1219 aa13.84□□□□□ -0.19
YBX3-212ENST00000542002 ADAMTS2O95450 1211 aa13.84□□□□□ -0.19
YBX3-212ENST00000542002 SHPRHQ149N8 1683 aa13.84□□□□□ -0.19
YBX3-212ENST00000542002 EIF3AQ14152 1382 aaKnown RBP13.83□□□□□ -0.19
YBX3-212ENST00000542002 MEX3CQ5U5Q3 659 aaKnown RBP13.83□□□□□ -0.2
YBX3-212ENST00000542002 NGDNQ8NEJ9 315 aaKnown RBP13.83□□□□□ -0.2
YBX3-212ENST00000542002 CABP1Q9NZU7 370 aa13.83□□□□□ -0.2
YBX3-212ENST00000542002 ACEP12821 1306 aa13.83□□□□□ -0.2
YBX3-212ENST00000542002 ST20-MTHFSA0A0A6YYL1 179 aa13.82□□□□□ -0.2
YBX3-212ENST00000542002 CABLES1Q8TDN4 633 aa13.82□□□□□ -0.2
YBX3-212ENST00000542002 EVC2Q86UK5 1308 aa13.82□□□□□ -0.2
YBX3-212ENST00000542002 SBNO1A3KN83 1393 aa13.82□□□□□ -0.2
YBX3-212ENST00000542002 PLEKHG5O94827 1062 aa13.81□□□□□ -0.2
YBX3-212ENST00000542002 MAPK8IP2Q13387 824 aaPredicted RBP13.81□□□□□ -0.2
YBX3-212ENST00000542002 C8orf37Q96NL8 207 aa13.81□□□□□ -0.2
YBX3-212ENST00000542002 TESK2Q96S53 571 aa13.81□□□□□ -0.2
YBX3-212ENST00000542002 KIF1AQ12756 1690 aa13.8□□□□□ -0.2
YBX3-212ENST00000542002 LMOD2Q6P5Q4 547 aa13.8□□□□□ -0.2
YBX3-212ENST00000542002 POLR3AO14802 1390 aaPredicted RBP13.8□□□□□ -0.2
YBX3-212ENST00000542002 QRICH2Q9H0J4 1663 aa13.79□□□□□ -0.2
YBX3-212ENST00000542002 TNS3Q68CZ2 1445 aa13.79□□□□□ -0.2
YBX3-212ENST00000542002 PPIP5K1Q6PFW1 1433 aa13.79□□□□□ -0.2
YBX3-212ENST00000542002 PAK3O75914 559 aaPredicted RBP13.78□□□□□ -0.2
YBX3-212ENST00000542002 AFF2P51816 1311 aa13.78□□□□□ -0.2
YBX3-212ENST00000542002 NGLY1Q96IV0 654 aa13.77□□□□□ -0.21
YBX3-212ENST00000542002 SBNO2Q9Y2G9 1366 aa13.77□□□□□ -0.21
YBX3-212ENST00000542002 COL22A1Q8NFW1 1626 aaPredicted RBP13.76□□□□□ -0.21
YBX3-212ENST00000542002 NUTM2GQ5VZR2 741 aa13.76□□□□□ -0.21
YBX3-212ENST00000542002 FNBP4Q8N3X1 1017 aaPredicted RBP13.76□□□□□ -0.21
YBX3-212ENST00000542002 ZNF772Q68DY9 489 aaPredicted RBP13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms