RNA–Protein interactions for RNA: ENST00000541416.5

SNHG1-216, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 996 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-216ENST00000541416 RRBP1Q9P2E9 1410 aaKnown RBP18.46■□□□□ 0.55
SNHG1-216ENST00000541416 FNBP4Q8N3X1 1017 aaPredicted RBP18.44■□□□□ 0.54
SNHG1-216ENST00000541416 LRPPRCP42704 1394 aaKnown RBP18.43■□□□□ 0.54
SNHG1-216ENST00000541416 SRCAPQ6ZRS2 3230 aa18.43■□□□□ 0.54
SNHG1-216ENST00000541416 ESCO1Q5FWF5 840 aa18.43■□□□□ 0.54
SNHG1-216ENST00000541416 COL22A1Q8NFW1 1626 aaPredicted RBP18.42■□□□□ 0.54
SNHG1-216ENST00000541416 PPLO60437 1756 aa18.42■□□□□ 0.54
SNHG1-216ENST00000541416 CDC42BPGQ6DT37 1551 aa18.41■□□□□ 0.54
SNHG1-216ENST00000541416 EP400Q96L91 3159 aa18.4■□□□□ 0.54
SNHG1-216ENST00000541416 CCDC125Q86Z20 511 aa18.39■□□□□ 0.53
SNHG1-216ENST00000541416 ATRNO75882 1429 aa18.39■□□□□ 0.53
SNHG1-216ENST00000541416 ZRANB1Q9UGI0 708 aa18.38■□□□□ 0.53
SNHG1-216ENST00000541416 MYOM2P54296 1465 aa18.37■□□□□ 0.53
SNHG1-216ENST00000541416 CCDC144AA2RUR9 1427 aa18.36■□□□□ 0.53
SNHG1-216ENST00000541416 FOXO3O43524 673 aa18.36■□□□□ 0.53
SNHG1-216ENST00000541416 PXDNQ92626 1479 aa18.35■□□□□ 0.53
SNHG1-216ENST00000541416 ANKRD30BQ9BXX2 1392 aa18.35■□□□□ 0.53
SNHG1-216ENST00000541416 MARF1Q9Y4F3 1742 aaKnown RBP18.35■□□□□ 0.53
SNHG1-216ENST00000541416 STK26Q9P289 416 aa18.34■□□□□ 0.53
SNHG1-216ENST00000541416 TECPR2O15040 1411 aa18.33■□□□□ 0.53
SNHG1-216ENST00000541416 GJD4Q96KN9 370 aaPredicted RBP18.33■□□□□ 0.52
SNHG1-216ENST00000541416 RGL3Q3MIN7 710 aa18.32■□□□□ 0.52
SNHG1-216ENST00000541416 BCL9LQ86UU0 1499 aa18.32■□□□□ 0.52
SNHG1-216ENST00000541416 ADGRF5Q8IZF2 1346 aa18.31■□□□□ 0.52
SNHG1-216ENST00000541416 XPCQ01831 940 aaPredicted RBP18.31■□□□□ 0.52
SNHG1-216ENST00000541416 ABCC11Q96J66 1382 aa18.3■□□□□ 0.52
SNHG1-216ENST00000541416 NUTM2FA1L443 756 aa18.3■□□□□ 0.52
SNHG1-216ENST00000541416 WAPLQ7Z5K2 1190 aa18.3■□□□□ 0.52
SNHG1-216ENST00000541416 KIF1AQ12756 1690 aa18.3■□□□□ 0.52
SNHG1-216ENST00000541416 HAP1P54257 671 aaPredicted RBP18.29■□□□□ 0.52
SNHG1-216ENST00000541416 KNDC1Q76NI1 1749 aa18.29■□□□□ 0.52
SNHG1-216ENST00000541416 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.29■□□□□ 0.52
SNHG1-216ENST00000541416 UNC5CLQ8IV45 518 aa18.28■□□□□ 0.52
SNHG1-216ENST00000541416 SPATA31A3Q5VYP0 1347 aa18.27■□□□□ 0.52
SNHG1-216ENST00000541416 ACIN1Q9UKV3 1341 aaKnown RBP18.27■□□□□ 0.52
SNHG1-216ENST00000541416 PSME1Q06323 249 aa18.27■□□□□ 0.52
SNHG1-216ENST00000541416 SPATA31E1Q6ZUB1 1445 aa18.26■□□□□ 0.51
SNHG1-216ENST00000541416 FMN2Q9NZ56 1722 aa18.26■□□□□ 0.51
SNHG1-216ENST00000541416 IFT172Q9UG01 1749 aa18.26■□□□□ 0.51
SNHG1-216ENST00000541416 PIK3C2GO75747 1445 aa18.25■□□□□ 0.51
SNHG1-216ENST00000541416 SF3B2Q13435 895 aaKnown RBP18.25■□□□□ 0.51
SNHG1-216ENST00000541416 TMEM132EQ6IEE7 984 aa18.25■□□□□ 0.51
SNHG1-216ENST00000541416 KRT28Q7Z3Y7 464 aa18.25■□□□□ 0.51
SNHG1-216ENST00000541416 SIRT1Q96EB6 747 aa18.25■□□□□ 0.51
SNHG1-216ENST00000541416 YTHDC2Q9H6S0 1430 aaKnown RBP18.24■□□□□ 0.51
SNHG1-216ENST00000541416 MPHOSPH9Q99550 1183 aa18.24■□□□□ 0.51
SNHG1-216ENST00000541416 BLMP54132 1417 aaPredicted RBP18.23■□□□□ 0.51
SNHG1-216ENST00000541416 SLIT2O94813 1529 aa18.23■□□□□ 0.51
SNHG1-216ENST00000541416 RALGAPBQ86X10 1494 aa18.23■□□□□ 0.51
SNHG1-216ENST00000541416 USP32Q8NFA0 1604 aa18.23■□□□□ 0.51
SNHG1-216ENST00000541416 PLEKHH1Q9ULM0 1364 aa18.22■□□□□ 0.51
SNHG1-216ENST00000541416 PHF8Q9UPP1 1060 aa18.22■□□□□ 0.51
SNHG1-216ENST00000541416 TNS3Q68CZ2 1445 aa18.22■□□□□ 0.51
SNHG1-216ENST00000541416 DHX57Q6P158 1386 aaKnown RBP18.21■□□□□ 0.51
SNHG1-216ENST00000541416 CCDC9Q9Y3X0 531 aaKnown RBP18.2■□□□□ 0.5
SNHG1-216ENST00000541416 ARHGEF10O15013 1369 aa18.19■□□□□ 0.5
SNHG1-216ENST00000541416 GLI3P10071 1580 aa18.19■□□□□ 0.5
SNHG1-216ENST00000541416 VPS72Q15906 364 aa18.19■□□□□ 0.5
SNHG1-216ENST00000541416 C14orf93Q9H972 538 aaKnown RBP18.19■□□□□ 0.5
SNHG1-216ENST00000541416 SBNO1A3KN83 1393 aa18.18■□□□□ 0.5
SNHG1-216ENST00000541416 LMOD2Q6P5Q4 547 aa18.18■□□□□ 0.5
SNHG1-216ENST00000541416 SEPT12Q8IYM1 358 aa18.17■□□□□ 0.5
SNHG1-216ENST00000541416 NWD2Q9ULI1 1742 aa18.17■□□□□ 0.5
SNHG1-216ENST00000541416 NRXN1Q9ULB1 1477 aa18.15■□□□□ 0.5
SNHG1-216ENST00000541416 POGKQ9P215 609 aa18.15■□□□□ 0.5
SNHG1-216ENST00000541416 RGPD8O14715 1765 aaPredicted RBP18.14■□□□□ 0.5
SNHG1-216ENST00000541416 A0A0G2JS52 829 aa18.14■□□□□ 0.49
SNHG1-216ENST00000541416 MYT1Q01538 1121 aa18.14■□□□□ 0.49
SNHG1-216ENST00000541416 KRT27Q7Z3Y8 459 aa18.14■□□□□ 0.49
SNHG1-216ENST00000541416 PRAM1Q96QH2 718 aa18.14■□□□□ 0.49
SNHG1-216ENST00000541416 BRWD3Q6RI45 1802 aa18.14■□□□□ 0.49
SNHG1-216ENST00000541416 PLCH1Q4KWH8 1693 aa18.13■□□□□ 0.49
SNHG1-216ENST00000541416 ONECUT3O60422 494 aaPredicted RBP18.13■□□□□ 0.49
SNHG1-216ENST00000541416 PLEKHG5O94827 1062 aa18.13■□□□□ 0.49
SNHG1-216ENST00000541416 CFAP70Q5T0N1 1121 aa18.13■□□□□ 0.49
SNHG1-216ENST00000541416 CABLES1Q8TDN4 633 aa18.13■□□□□ 0.49
SNHG1-216ENST00000541416 EIF3AQ14152 1382 aaKnown RBP18.13■□□□□ 0.49
SNHG1-216ENST00000541416 ANKARQ7Z5J8 1434 aa18.13■□□□□ 0.49
SNHG1-216ENST00000541416 SAFB2Q14151 953 aaKnown RBP eCLIP18.12■□□□□ 0.49
SNHG1-216ENST00000541416 DEFB132Q7Z7B7 95 aa18.11■□□□□ 0.49
SNHG1-216ENST00000541416 GPRASP1Q5JY77 1395 aa18.11■□□□□ 0.49
SNHG1-216ENST00000541416 DLC1Q96QB1 1528 aa18.1■□□□□ 0.49
SNHG1-216ENST00000541416 BAG6P46379 1132 aa18.1■□□□□ 0.49
SNHG1-216ENST00000541416 ABCA3Q99758 1704 aa18.09■□□□□ 0.49
SNHG1-216ENST00000541416 PMFBP1Q8TBY8 1022 aa18.09■□□□□ 0.49
SNHG1-216ENST00000541416 FAM83GA6ND36 823 aa18.08■□□□□ 0.48
SNHG1-216ENST00000541416 ADGRB2O60241 1585 aa18.07■□□□□ 0.48
SNHG1-216ENST00000541416 BTG4Q9NY30 223 aa18.06■□□□□ 0.48
SNHG1-216ENST00000541416 FAM98CQ17RN3 349 aaKnown RBP18.05■□□□□ 0.48
SNHG1-216ENST00000541416 COL14A1Q05707 1796 aaKnown RBP18.04■□□□□ 0.48
SNHG1-216ENST00000541416 TRAK1Q9UPV9 953 aa18.04■□□□□ 0.48
SNHG1-216ENST00000541416 LRP5O75197 1615 aa18.03■□□□□ 0.48
SNHG1-216ENST00000541416 STAC3Q96MF2 364 aa18.03■□□□□ 0.48
SNHG1-216ENST00000541416 NRAPQ86VF7 1730 aa18.02■□□□□ 0.48
SNHG1-216ENST00000541416 NGDNQ8NEJ9 315 aaKnown RBP18.02■□□□□ 0.48
SNHG1-216ENST00000541416 HIRIP3Q9BW71 556 aaPredicted RBP18.02■□□□□ 0.48
SNHG1-216ENST00000541416 TRPM3Q9HCF6 1732 aaPredicted RBP18.02■□□□□ 0.48
SNHG1-216ENST00000541416 TULP4Q9NRJ4 1543 aa18.02■□□□□ 0.47
SNHG1-216ENST00000541416 PAK3O75914 559 aaPredicted RBP18.01■□□□□ 0.47
SNHG1-216ENST00000541416 MINK1Q8N4C8 1332 aaPredicted RBP18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms