RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 SMC4Q9NTJ3 1288 aa13.81□□□□□ -0.2
CLIP1-213ENST00000540338 CLUAP1Q96AJ1 413 aa13.81□□□□□ -0.2
CLIP1-213ENST00000540338 BCL11AQ9H165 835 aa13.81□□□□□ -0.2
CLIP1-213ENST00000540338 POLR1AO95602 1720 aaPredicted RBP13.8□□□□□ -0.2
CLIP1-213ENST00000540338 IPO8O15397 1037 aaKnown RBP13.8□□□□□ -0.2
CLIP1-213ENST00000540338 CLTCL1P53675 1640 aa13.8□□□□□ -0.2
CLIP1-213ENST00000540338 WWC1Q8IX03 1113 aa13.8□□□□□ -0.2
CLIP1-213ENST00000540338 COG3Q96JB2 828 aa13.8□□□□□ -0.2
CLIP1-213ENST00000540338 BCL2L13Q9BXK5 485 aa13.8□□□□□ -0.2
CLIP1-213ENST00000540338 E9PCH4 1651 aa13.8□□□□□ -0.2
CLIP1-213ENST00000540338 COG6Q9Y2V7 657 aa13.8□□□□□ -0.2
CLIP1-213ENST00000540338 PMFBP1Q8TBY8 1022 aa13.8□□□□□ -0.2
CLIP1-213ENST00000540338 WDR63Q8IWG1 891 aa13.79□□□□□ -0.2
CLIP1-213ENST00000540338 SBNO2Q9Y2G9 1366 aa13.79□□□□□ -0.2
CLIP1-213ENST00000540338 EFCAB6Q5THR3 1501 aa13.79□□□□□ -0.2
CLIP1-213ENST00000540338 C14orf37Q86TY3 774 aa13.79□□□□□ -0.2
CLIP1-213ENST00000540338 RWDD1Q9H446 243 aaPredicted RBP13.79□□□□□ -0.2
CLIP1-213ENST00000540338 SOX12O15370 315 aa13.78□□□□□ -0.2
CLIP1-213ENST00000540338 BCAR3O75815 825 aa13.78□□□□□ -0.2
CLIP1-213ENST00000540338 RIPK4P57078 832 aa13.78□□□□□ -0.2
CLIP1-213ENST00000540338 CHMP4BQ9H444 224 aaKnown RBP13.78□□□□□ -0.2
CLIP1-213ENST00000540338 SPHKAPQ2M3C7 1700 aa13.78□□□□□ -0.2
CLIP1-213ENST00000540338 NUTM2FA1L443 756 aa13.78□□□□□ -0.2
CLIP1-213ENST00000540338 TXNDC2Q86VQ3 553 aa13.78□□□□□ -0.2
CLIP1-213ENST00000540338 NSD2O96028 1365 aa13.78□□□□□ -0.2
CLIP1-213ENST00000540338 INO80Q9ULG1 1556 aaPredicted RBP13.78□□□□□ -0.2
CLIP1-213ENST00000540338 BLMP54132 1417 aaPredicted RBP13.77□□□□□ -0.2
CLIP1-213ENST00000540338 HECW2Q9P2P5 1572 aa13.77□□□□□ -0.2
CLIP1-213ENST00000540338 NINLQ9Y2I6 1382 aa13.77□□□□□ -0.21
CLIP1-213ENST00000540338 CFAP65Q6ZU64 1925 aaKnown RBP13.77□□□□□ -0.21
CLIP1-213ENST00000540338 POLR3AO14802 1390 aaPredicted RBP13.77□□□□□ -0.21
CLIP1-213ENST00000540338 ANKRD36BQ8N2N9 1353 aa13.77□□□□□ -0.21
CLIP1-213ENST00000540338 PDE3AQ14432 1141 aa13.76□□□□□ -0.21
CLIP1-213ENST00000540338 ZKSCAN2Q63HK3 967 aa13.76□□□□□ -0.21
CLIP1-213ENST00000540338 WAPLQ7Z5K2 1190 aa13.76□□□□□ -0.21
CLIP1-213ENST00000540338 LAMC1P11047 1609 aa13.76□□□□□ -0.21
CLIP1-213ENST00000540338 PLEKHH1Q9ULM0 1364 aa13.76□□□□□ -0.21
CLIP1-213ENST00000540338 YEATS2Q9ULM3 1422 aa13.76□□□□□ -0.21
CLIP1-213ENST00000540338 C20orf194Q5TEA3 1177 aa13.76□□□□□ -0.21
CLIP1-213ENST00000540338 MADDQ8WXG6 1647 aa13.75□□□□□ -0.21
CLIP1-213ENST00000540338 ITPRIPQ8IWB1 547 aa13.75□□□□□ -0.21
CLIP1-213ENST00000540338 ERVK-7P63135 1459 aa13.75□□□□□ -0.21
CLIP1-213ENST00000540338 LMOD3Q0VAK6 560 aa13.75□□□□□ -0.21
CLIP1-213ENST00000540338 PANK1Q8TE04 598 aa13.75□□□□□ -0.21
CLIP1-213ENST00000540338 KIF1BO60333 1816 aa13.74□□□□□ -0.21
CLIP1-213ENST00000540338 NKTRP30414 1462 aaKnown RBP13.74□□□□□ -0.21
CLIP1-213ENST00000540338 SYNMO15061 1565 aa13.74□□□□□ -0.21
CLIP1-213ENST00000540338 NGDNQ8NEJ9 315 aaKnown RBP13.73□□□□□ -0.21
CLIP1-213ENST00000540338 HAP1P54257 671 aaPredicted RBP13.73□□□□□ -0.21
CLIP1-213ENST00000540338 FAM161AQ3B820 660 aa13.73□□□□□ -0.21
CLIP1-213ENST00000540338 RNF17Q9BXT8 1623 aaKnown RBP13.73□□□□□ -0.21
CLIP1-213ENST00000540338 AAMPQ13685 434 aa13.73□□□□□ -0.21
CLIP1-213ENST00000540338 BECN1Q14457 450 aa13.73□□□□□ -0.21
CLIP1-213ENST00000540338 KDM5AP29375 1690 aaKnown RBP13.73□□□□□ -0.21
CLIP1-213ENST00000540338 MAP3K4Q9Y6R4 1608 aa13.72□□□□□ -0.21
CLIP1-213ENST00000540338 ABCC3O15438 1527 aa13.72□□□□□ -0.21
CLIP1-213ENST00000540338 LMTK2Q8IWU2 1503 aa13.72□□□□□ -0.21
CLIP1-213ENST00000540338 ZMYM4Q5VZL5 1548 aa13.71□□□□□ -0.21
CLIP1-213ENST00000540338 DZIP1LQ8IYY4 767 aaKnown RBP13.71□□□□□ -0.21
CLIP1-213ENST00000540338 HMOX1P09601 288 aa13.71□□□□□ -0.22
CLIP1-213ENST00000540338 CCDC61Q9Y6R9 512 aa13.71□□□□□ -0.22
CLIP1-213ENST00000540338 ZNF692Q9BU19 519 aaPredicted RBP13.7□□□□□ -0.22
CLIP1-213ENST00000540338 PRKAR2BP31323 418 aa13.7□□□□□ -0.22
CLIP1-213ENST00000540338 ZBTB7CA1YPR0 619 aa13.7□□□□□ -0.22
CLIP1-213ENST00000540338 FYB1O15117 783 aa13.7□□□□□ -0.22
CLIP1-213ENST00000540338 TMPOP42166 694 aaKnown RBP13.7□□□□□ -0.22
CLIP1-213ENST00000540338 NUDT16Q96DE0 195 aaKnown RBP13.7□□□□□ -0.22
CLIP1-213ENST00000540338 YTHDC2Q9H6S0 1430 aaKnown RBP13.69□□□□□ -0.22
CLIP1-213ENST00000540338 WASLO00401 505 aaPredicted RBP13.69□□□□□ -0.22
CLIP1-213ENST00000540338 CT47B1P0C2W7 299 aaPredicted RBP13.69□□□□□ -0.22
CLIP1-213ENST00000540338 EXOSC9Q06265 439 aaKnown RBP13.69□□□□□ -0.22
CLIP1-213ENST00000540338 BACH2Q9BYV9 841 aa13.69□□□□□ -0.22
CLIP1-213ENST00000540338 RTF1Q92541 710 aaKnown RBP13.69□□□□□ -0.22
CLIP1-213ENST00000540338 RIMS2Q9UQ26 1411 aa13.68□□□□□ -0.22
CLIP1-213ENST00000540338 FCHSD2O94868 740 aa13.68□□□□□ -0.22
CLIP1-213ENST00000540338 TSR2Q969E8 191 aaKnown RBP13.68□□□□□ -0.22
CLIP1-213ENST00000540338 ARHGAP31Q2M1Z3 1444 aa13.68□□□□□ -0.22
CLIP1-213ENST00000540338 KIDINS220Q9ULH0 1771 aa13.68□□□□□ -0.22
CLIP1-213ENST00000540338 CEP152O94986 1710 aa13.68□□□□□ -0.22
CLIP1-213ENST00000540338 RARSP54136 660 aaKnown RBP13.67□□□□□ -0.22
CLIP1-213ENST00000540338 DDX19BQ9UMR2 479 aa13.67□□□□□ -0.22
CLIP1-213ENST00000540338 A0A1W2PP64 1363 aa13.67□□□□□ -0.22
CLIP1-213ENST00000540338 PAK3O75914 559 aaPredicted RBP13.67□□□□□ -0.22
CLIP1-213ENST00000540338 VWDEQ8N2E2 1590 aa13.66□□□□□ -0.22
CLIP1-213ENST00000540338 ELL2O00472 640 aaPredicted RBP13.66□□□□□ -0.22
CLIP1-213ENST00000540338 AMPHP49418 695 aa13.66□□□□□ -0.22
CLIP1-213ENST00000540338 PLEKHG5O94827 1062 aa13.66□□□□□ -0.22
CLIP1-213ENST00000540338 GNAI1P63096 354 aa13.66□□□□□ -0.22
CLIP1-213ENST00000540338 PPRC1Q5VV67 1664 aaKnown RBP13.66□□□□□ -0.22
CLIP1-213ENST00000540338 MSH5O43196 834 aa13.66□□□□□ -0.22
CLIP1-213ENST00000540338 SLC26A8Q96RN1 970 aa13.66□□□□□ -0.22
CLIP1-213ENST00000540338 SPINK5Q9NQ38 1064 aaPredicted RBP13.66□□□□□ -0.22
CLIP1-213ENST00000540338 KIF16BQ96L93 1317 aa13.66□□□□□ -0.22
CLIP1-213ENST00000540338 DEPDC5O75140 1603 aa13.66□□□□□ -0.22
CLIP1-213ENST00000540338 ADGRB3O60242 1522 aa13.65□□□□□ -0.22
CLIP1-213ENST00000540338 TNRQ92752 1358 aa13.65□□□□□ -0.22
CLIP1-213ENST00000540338 CCDC27Q2M243 656 aa13.65□□□□□ -0.22
CLIP1-213ENST00000540338 THEMISQ8N1K5 641 aaPredicted RBP13.65□□□□□ -0.22
CLIP1-213ENST00000540338 ABCA6Q8N139 1617 aa13.64□□□□□ -0.23
CLIP1-213ENST00000540338 ZMYM3Q14202 1370 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms