RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 ADGRB1O14514 1584 aa21.57■■□□□ 1.04
USP28-204ENST00000537642 SIRT1Q96EB6 747 aa21.56■■□□□ 1.04
USP28-204ENST00000537642 PHF23Q9BUL5 403 aaPredicted RBP21.56■■□□□ 1.04
USP28-204ENST00000537642 DDX17Q92841 729 aaKnown RBP21.54■■□□□ 1.04
USP28-204ENST00000537642 ORAI2Q96SN7 254 aa21.54■■□□□ 1.04
USP28-204ENST00000537642 SHPRHQ149N8 1683 aa21.53■■□□□ 1.04
USP28-204ENST00000537642 DLC1Q96QB1 1528 aa21.52■■□□□ 1.04
USP28-204ENST00000537642 FMN2Q9NZ56 1722 aa21.5■■□□□ 1.03
USP28-204ENST00000537642 PRAM1Q96QH2 718 aa21.5■■□□□ 1.03
USP28-204ENST00000537642 TRIM26Q12899 539 aaPredicted RBP21.49■■□□□ 1.03
USP28-204ENST00000537642 RGS17Q9UGC6 210 aaPredicted RBP21.49■■□□□ 1.03
USP28-204ENST00000537642 TRAK1Q9UPV9 953 aa21.48■■□□□ 1.03
USP28-204ENST00000537642 SPATA31A6Q5VVP1 1343 aa21.48■■□□□ 1.03
USP28-204ENST00000537642 LRP6O75581 1613 aa21.47■■□□□ 1.03
USP28-204ENST00000537642 NUTM2FA1L443 756 aa21.47■■□□□ 1.03
USP28-204ENST00000537642 SAFB2Q14151 953 aaKnown RBP eCLIP21.47■■□□□ 1.03
USP28-204ENST00000537642 ESCO1Q5FWF5 840 aa21.46■■□□□ 1.03
USP28-204ENST00000537642 LRRC59Q96AG4 307 aaKnown RBP21.46■■□□□ 1.03
USP28-204ENST00000537642 SIN3AQ96ST3 1273 aa21.46■■□□□ 1.03
USP28-204ENST00000537642 POGKQ9P215 609 aa21.45■■□□□ 1.02
USP28-204ENST00000537642 KIAA1210Q9ULL0 1709 aa21.45■■□□□ 1.02
USP28-204ENST00000537642 SOS2Q07890 1332 aaPredicted RBP21.45■■□□□ 1.02
USP28-204ENST00000537642 PNPLA6Q8IY17 1366 aa21.43■■□□□ 1.02
USP28-204ENST00000537642 RGPD8O14715 1765 aaPredicted RBP21.43■■□□□ 1.02
USP28-204ENST00000537642 ADGRB2O60241 1585 aa21.42■■□□□ 1.02
USP28-204ENST00000537642 ARHGEF28Q8N1W1 1705 aaKnown RBP21.42■■□□□ 1.02
USP28-204ENST00000537642 SOCS7O14512 581 aa21.41■■□□□ 1.02
USP28-204ENST00000537642 L3MBTL2Q969R5 705 aa21.41■■□□□ 1.02
USP28-204ENST00000537642 NPHP3Q7Z494 1330 aa21.39■■□□□ 1.01
USP28-204ENST00000537642 NUTM2BA6NNL0 878 aaPredicted RBP21.39■■□□□ 1.01
USP28-204ENST00000537642 NUTM2EB1AL46 878 aaPredicted RBP21.39■■□□□ 1.01
USP28-204ENST00000537642 FOXO3O43524 673 aa21.39■■□□□ 1.01
USP28-204ENST00000537642 NEUROD1Q13562 356 aa21.39■■□□□ 1.01
USP28-204ENST00000537642 NUTM2AQ8IVF1 878 aaPredicted RBP21.39■■□□□ 1.01
USP28-204ENST00000537642 PXDNQ92626 1479 aa21.39■■□□□ 1.01
USP28-204ENST00000537642 KIF1AQ12756 1690 aa21.38■■□□□ 1.01
USP28-204ENST00000537642 MINK1Q8N4C8 1332 aaPredicted RBP21.38■■□□□ 1.01
USP28-204ENST00000537642 NBPF1Q3BBV0 1214 aa21.38■■□□□ 1.01
USP28-204ENST00000537642 MEX3CQ5U5Q3 659 aaKnown RBP21.38■■□□□ 1.01
USP28-204ENST00000537642 POTEAQ6S8J7 498 aa21.37■■□□□ 1.01
USP28-204ENST00000537642 HIRIP3Q9BW71 556 aaPredicted RBP21.37■■□□□ 1.01
USP28-204ENST00000537642 USP32Q8NFA0 1604 aa21.37■■□□□ 1.01
USP28-204ENST00000537642 XPCQ01831 940 aaPredicted RBP21.36■■□□□ 1.01
USP28-204ENST00000537642 PHF8Q9UPP1 1060 aa21.34■■□□□ 1.01
USP28-204ENST00000537642 ANKARQ7Z5J8 1434 aa21.34■■□□□ 1.01
USP28-204ENST00000537642 COL22A1Q8NFW1 1626 aaPredicted RBP21.33■■□□□ 1
USP28-204ENST00000537642 WASLO00401 505 aaPredicted RBP21.32■■□□□ 1
USP28-204ENST00000537642 TULP4Q9NRJ4 1543 aa21.31■■□□□ 1
USP28-204ENST00000537642 PRR36Q9H6K5 1346 aa21.3■■□□□ 1
USP28-204ENST00000537642 TRPM1Q7Z4N2 1603 aa21.3■■□□□ 1
USP28-204ENST00000537642 EIF3AQ14152 1382 aaKnown RBP21.29■■□□□ 1
USP28-204ENST00000537642 KRT28Q7Z3Y7 464 aa21.29■■□□□ 1
USP28-204ENST00000537642 ZNF772Q68DY9 489 aaPredicted RBP21.27■■□□□ 1
USP28-204ENST00000537642 PMFBP1Q8TBY8 1022 aa21.27■■□□□ 1
USP28-204ENST00000537642 SPATA31A3Q5VYP0 1347 aa21.27■□□□□ 0.99
USP28-204ENST00000537642 ADAMTS2O95450 1211 aa21.26■□□□□ 0.99
USP28-204ENST00000537642 C8orf37Q96NL8 207 aa21.26■□□□□ 0.99
USP28-204ENST00000537642 AFF2P51816 1311 aa21.26■□□□□ 0.99
USP28-204ENST00000537642 NBPF8Q3BBV2 869 aa21.24■□□□□ 0.99
USP28-204ENST00000537642 ATP7BP35670 1465 aa21.24■□□□□ 0.99
USP28-204ENST00000537642 PSME1Q06323 249 aa21.23■□□□□ 0.99
USP28-204ENST00000537642 CDK19Q9BWU1 502 aa21.23■□□□□ 0.99
USP28-204ENST00000537642 CENPJQ9HC77 1338 aaPredicted RBP21.23■□□□□ 0.99
USP28-204ENST00000537642 SBNO1A3KN83 1393 aa21.23■□□□□ 0.99
USP28-204ENST00000537642 TNS3Q68CZ2 1445 aa21.22■□□□□ 0.99
USP28-204ENST00000537642 ITSN1Q15811 1721 aa21.22■□□□□ 0.99
USP28-204ENST00000537642 NUDT16Q96DE0 195 aaKnown RBP21.22■□□□□ 0.99
USP28-204ENST00000537642 QRICH2Q9H0J4 1663 aa21.21■□□□□ 0.99
USP28-204ENST00000537642 ROCK2O75116 1388 aaKnown RBP21.21■□□□□ 0.99
USP28-204ENST00000537642 TONSLQ96HA7 1378 aa21.21■□□□□ 0.99
USP28-204ENST00000537642 TRPM3Q9HCF6 1732 aaPredicted RBP21.21■□□□□ 0.99
USP28-204ENST00000537642 MARF1Q9Y4F3 1742 aaKnown RBP21.21■□□□□ 0.99
USP28-204ENST00000537642 NGLY1Q96IV0 654 aa21.2■□□□□ 0.98
USP28-204ENST00000537642 TOPAZ1Q8N9V7 1692 aa21.19■□□□□ 0.98
USP28-204ENST00000537642 NGDNQ8NEJ9 315 aaKnown RBP21.17■□□□□ 0.98
USP28-204ENST00000537642 GPRASP1Q5JY77 1395 aa21.17■□□□□ 0.98
USP28-204ENST00000537642 ARHGEF10O15013 1369 aa21.16■□□□□ 0.98
USP28-204ENST00000537642 FNBP4Q8N3X1 1017 aaPredicted RBP21.16■□□□□ 0.98
USP28-204ENST00000537642 ALS2Q96Q42 1657 aa21.15■□□□□ 0.98
USP28-204ENST00000537642 LMOD2Q6P5Q4 547 aa21.15■□□□□ 0.98
USP28-204ENST00000537642 ABCA3Q99758 1704 aa21.15■□□□□ 0.98
USP28-204ENST00000537642 RXRBP28702 533 aa21.14■□□□□ 0.97
USP28-204ENST00000537642 CABLES1Q8TDN4 633 aa21.14■□□□□ 0.97
USP28-204ENST00000537642 QTRT2Q9H974 415 aaKnown RBP21.14■□□□□ 0.97
USP28-204ENST00000537642 USP21Q9UK80 565 aa21.14■□□□□ 0.97
USP28-204ENST00000537642 CCDC61Q9Y6R9 512 aa21.14■□□□□ 0.97
USP28-204ENST00000537642 CABP2Q9NPB3 220 aa21.13■□□□□ 0.97
USP28-204ENST00000537642 RALGAPBQ86X10 1494 aa21.13■□□□□ 0.97
USP28-204ENST00000537642 PLEKHG3A1L390 1219 aa21.12■□□□□ 0.97
USP28-204ENST00000537642 PLEKHG5O94827 1062 aa21.12■□□□□ 0.97
USP28-204ENST00000537642 SRPK2P78362 688 aaKnown RBP21.12■□□□□ 0.97
USP28-204ENST00000537642 POLR3AO14802 1390 aaPredicted RBP21.11■□□□□ 0.97
USP28-204ENST00000537642 PCGF6Q9BYE7 350 aa21.11■□□□□ 0.97
USP28-204ENST00000537642 ACEP12821 1306 aa21.1■□□□□ 0.97
USP28-204ENST00000537642 BCL9LQ86UU0 1499 aa21.1■□□□□ 0.97
USP28-204ENST00000537642 CDK12Q9NYV4 1490 aaPredicted RBP21.1■□□□□ 0.97
USP28-204ENST00000537642 HAP1P54257 671 aaPredicted RBP21.09■□□□□ 0.97
USP28-204ENST00000537642 RBM6P78332 1123 aaKnown RBP21.09■□□□□ 0.97
USP28-204ENST00000537642 CARD11Q9BXL7 1154 aa21.09■□□□□ 0.97
USP28-204ENST00000537642 PPIP5K1Q6PFW1 1433 aa21.09■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms