RNA–Protein interactions for RNA: ENST00000535399.1

SFSWAP-204, Transcript of splicing factor SWAP, humanhuman

TSL 2

Gene SFSWAP, Length 778 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-204ENST00000535399 KIAA1210Q9ULL0 1709 aa32.67■■■□□ 2.82
SFSWAP-204ENST00000535399 MST1RQ04912 1400 aa32.67■■■□□ 2.82
SFSWAP-204ENST00000535399 NBPF8Q3BBV2 869 aa32.63■■■□□ 2.81
SFSWAP-204ENST00000535399 ROBO1Q9Y6N7 1651 aa32.62■■■□□ 2.81
SFSWAP-204ENST00000535399 POGKQ9P215 609 aa32.61■■■□□ 2.81
SFSWAP-204ENST00000535399 SAFB2Q14151 953 aaKnown RBP eCLIP32.6■■■□□ 2.81
SFSWAP-204ENST00000535399 CDC42BPGQ6DT37 1551 aa32.58■■■□□ 2.81
SFSWAP-204ENST00000535399 BRINP3Q76B58 766 aa32.58■■■□□ 2.81
SFSWAP-204ENST00000535399 CCER1Q8TC90 406 aaPredicted RBP32.58■■■□□ 2.81
SFSWAP-204ENST00000535399 C1orf167Q5SNV9 1468 aa32.57■■■□□ 2.8
SFSWAP-204ENST00000535399 TRPM1Q7Z4N2 1603 aa32.54■■■□□ 2.8
SFSWAP-204ENST00000535399 ROCK2O75116 1388 aaKnown RBP32.51■■■□□ 2.79
SFSWAP-204ENST00000535399 ARHGEF28Q8N1W1 1705 aaKnown RBP32.49■■■□□ 2.79
SFSWAP-204ENST00000535399 MINK1Q8N4C8 1332 aaPredicted RBP32.49■■■□□ 2.79
SFSWAP-204ENST00000535399 GPRASP1Q5JY77 1395 aa32.48■■■□□ 2.79
SFSWAP-204ENST00000535399 ORAI2Q96SN7 254 aa32.48■■■□□ 2.79
SFSWAP-204ENST00000535399 HIRIP3Q9BW71 556 aaPredicted RBP32.47■■■□□ 2.79
SFSWAP-204ENST00000535399 TIMELESSQ9UNS1 1208 aa32.47■■■□□ 2.79
SFSWAP-204ENST00000535399 NUTM2FA1L443 756 aa32.46■■■□□ 2.79
SFSWAP-204ENST00000535399 ADGRB2O60241 1585 aa32.45■■■□□ 2.79
SFSWAP-204ENST00000535399 RALGAPBQ86X10 1494 aa32.45■■■□□ 2.79
SFSWAP-204ENST00000535399 AHDC1Q5TGY3 1603 aaPredicted RBP32.44■■■□□ 2.78
SFSWAP-204ENST00000535399 FMN2Q9NZ56 1722 aa32.42■■■□□ 2.78
SFSWAP-204ENST00000535399 ESCO1Q5FWF5 840 aa32.41■■■□□ 2.78
SFSWAP-204ENST00000535399 WASLO00401 505 aaPredicted RBP32.4■■■□□ 2.78
SFSWAP-204ENST00000535399 DDX17Q92841 729 aaKnown RBP32.4■■■□□ 2.78
SFSWAP-204ENST00000535399 CENPJQ9HC77 1338 aaPredicted RBP32.4■■■□□ 2.78
SFSWAP-204ENST00000535399 PHLPP1O60346 1717 aa32.38■■■□□ 2.77
SFSWAP-204ENST00000535399 CARD11Q9BXL7 1154 aa32.38■■■□□ 2.77
SFSWAP-204ENST00000535399 COL16A1Q07092 1604 aaPredicted RBP32.37■■■□□ 2.77
SFSWAP-204ENST00000535399 ANKARQ7Z5J8 1434 aa32.35■■■□□ 2.77
SFSWAP-204ENST00000535399 NHSL1Q5SYE7 1610 aa32.34■■■□□ 2.77
SFSWAP-204ENST00000535399 EIF3AQ14152 1382 aaKnown RBP32.32■■■□□ 2.77
SFSWAP-204ENST00000535399 PRR36Q9H6K5 1346 aa32.32■■■□□ 2.76
SFSWAP-204ENST00000535399 TULP4Q9NRJ4 1543 aa32.31■■■□□ 2.76
SFSWAP-204ENST00000535399 CDK19Q9BWU1 502 aa32.3■■■□□ 2.76
SFSWAP-204ENST00000535399 JCADQ9P266 1359 aa32.3■■■□□ 2.76
SFSWAP-204ENST00000535399 SOS2Q07890 1332 aaPredicted RBP32.29■■■□□ 2.76
SFSWAP-204ENST00000535399 FOXO3O43524 673 aa32.29■■■□□ 2.76
SFSWAP-204ENST00000535399 PHF8Q9UPP1 1060 aa32.29■■■□□ 2.76
SFSWAP-204ENST00000535399 USP32Q8NFA0 1604 aa32.29■■■□□ 2.76
SFSWAP-204ENST00000535399 NPHP3Q7Z494 1330 aa32.28■■■□□ 2.76
SFSWAP-204ENST00000535399 QRICH2Q9H0J4 1663 aa32.24■■■□□ 2.75
SFSWAP-204ENST00000535399 LRRC59Q96AG4 307 aaKnown RBP32.24■■■□□ 2.75
SFSWAP-204ENST00000535399 NUDT16Q96DE0 195 aaKnown RBP32.24■■■□□ 2.75
SFSWAP-204ENST00000535399 ATP7BP35670 1465 aa32.23■■■□□ 2.75
SFSWAP-204ENST00000535399 PXDNQ92626 1479 aa32.23■■■□□ 2.75
SFSWAP-204ENST00000535399 KIF1AQ12756 1690 aa32.22■■■□□ 2.75
SFSWAP-204ENST00000535399 RGPD8O14715 1765 aaPredicted RBP32.22■■■□□ 2.75
SFSWAP-204ENST00000535399 XPCQ01831 940 aaPredicted RBP32.21■■■□□ 2.75
SFSWAP-204ENST00000535399 PMFBP1Q8TBY8 1022 aa32.2■■■□□ 2.75
SFSWAP-204ENST00000535399 SBNO2Q9Y2G9 1366 aa32.19■■■□□ 2.74
SFSWAP-204ENST00000535399 CABP2Q9NPB3 220 aa32.18■■■□□ 2.74
SFSWAP-204ENST00000535399 MED1Q15648 1581 aaPredicted RBP32.18■■■□□ 2.74
SFSWAP-204ENST00000535399 SRPK2P78362 688 aaKnown RBP32.17■■■□□ 2.74
SFSWAP-204ENST00000535399 EVC2Q86UK5 1308 aa32.17■■■□□ 2.74
SFSWAP-204ENST00000535399 KRT28Q7Z3Y7 464 aa32.16■■■□□ 2.74
SFSWAP-204ENST00000535399 CCDC61Q9Y6R9 512 aa32.16■■■□□ 2.74
SFSWAP-204ENST00000535399 PNPLA6Q8IY17 1366 aa32.16■■■□□ 2.74
SFSWAP-204ENST00000535399 SPATA31A6Q5VVP1 1343 aa32.15■■■□□ 2.74
SFSWAP-204ENST00000535399 SHPRHQ149N8 1683 aa32.14■■■□□ 2.74
SFSWAP-204ENST00000535399 ST20-MTHFSA0A0A6YYL1 179 aa32.12■■■□□ 2.73
SFSWAP-204ENST00000535399 USP47Q96K76 1375 aa32.11■■■□□ 2.73
SFSWAP-204ENST00000535399 PSME1Q06323 249 aa32.11■■■□□ 2.73
SFSWAP-204ENST00000535399 PLEKHG3A1L390 1219 aa32.1■■■□□ 2.73
SFSWAP-204ENST00000535399 TESK2Q96S53 571 aa32.1■■■□□ 2.73
SFSWAP-204ENST00000535399 DISP3Q9P2K9 1392 aa32.09■■■□□ 2.73
SFSWAP-204ENST00000535399 NGDNQ8NEJ9 315 aaKnown RBP32.09■■■□□ 2.73
SFSWAP-204ENST00000535399 SPATA31A3Q5VYP0 1347 aa32.08■■■□□ 2.73
SFSWAP-204ENST00000535399 TOPAZ1Q8N9V7 1692 aa32.08■■■□□ 2.73
SFSWAP-204ENST00000535399 SBNO1A3KN83 1393 aa32.07■■■□□ 2.73
SFSWAP-204ENST00000535399 LRP6O75581 1613 aa32.07■■■□□ 2.72
SFSWAP-204ENST00000535399 POLR3AO14802 1390 aaPredicted RBP32.06■■■□□ 2.72
SFSWAP-204ENST00000535399 PPIP5K1Q6PFW1 1433 aa32.05■■■□□ 2.72
SFSWAP-204ENST00000535399 ITSN1Q15811 1721 aa32.05■■■□□ 2.72
SFSWAP-204ENST00000535399 ACEP12821 1306 aa32.04■■■□□ 2.72
SFSWAP-204ENST00000535399 TNS3Q68CZ2 1445 aa32.03■■■□□ 2.72
SFSWAP-204ENST00000535399 NUTM2BA6NNL0 878 aaPredicted RBP32.03■■■□□ 2.72
SFSWAP-204ENST00000535399 NUTM2EB1AL46 878 aaPredicted RBP32.03■■■□□ 2.72
SFSWAP-204ENST00000535399 NUTM2AQ8IVF1 878 aaPredicted RBP32.03■■■□□ 2.72
SFSWAP-204ENST00000535399 CABP1Q9NZU7 370 aa32.02■■■□□ 2.72
SFSWAP-204ENST00000535399 ATAD2Q6PL18 1390 aa32.01■■■□□ 2.71
SFSWAP-204ENST00000535399 COL22A1Q8NFW1 1626 aaPredicted RBP31.99■■■□□ 2.71
SFSWAP-204ENST00000535399 SLC24A1O60721 1099 aa31.97■■■□□ 2.71
SFSWAP-204ENST00000535399 PHF23Q9BUL5 403 aaPredicted RBP31.97■■■□□ 2.71
SFSWAP-204ENST00000535399 PUS7Q96PZ0 661 aaKnown RBP31.96■■■□□ 2.71
SFSWAP-204ENST00000535399 TRPM3Q9HCF6 1732 aaPredicted RBP31.96■■■□□ 2.71
SFSWAP-204ENST00000535399 ARHGEF10O15013 1369 aa31.95■■■□□ 2.71
SFSWAP-204ENST00000535399 MEX3CQ5U5Q3 659 aaKnown RBP31.94■■■□□ 2.7
SFSWAP-204ENST00000535399 RGS17Q9UGC6 210 aaPredicted RBP31.94■■■□□ 2.7
SFSWAP-204ENST00000535399 LMOD2Q6P5Q4 547 aa31.93■■■□□ 2.7
SFSWAP-204ENST00000535399 PAK3O75914 559 aaPredicted RBP31.91■■■□□ 2.7
SFSWAP-204ENST00000535399 ADAMTS2O95450 1211 aa31.89■■■□□ 2.7
SFSWAP-204ENST00000535399 TMF1P82094 1093 aa31.89■■■□□ 2.7
SFSWAP-204ENST00000535399 ALS2Q96Q42 1657 aa31.87■■■□□ 2.69
SFSWAP-204ENST00000535399 USP6P35125 1406 aa31.87■■■□□ 2.69
SFSWAP-204ENST00000535399 EIF4G2P78344 907 aaKnown RBP eCLIP31.87■■■□□ 2.69
SFSWAP-204ENST00000535399 CABLES1Q8TDN4 633 aa31.87■■■□□ 2.69
SFSWAP-204ENST00000535399 CPSF1Q10570 1443 aaKnown RBP31.85■■■□□ 2.69
SFSWAP-204ENST00000535399 BRD4O60885 1362 aaPredicted RBP31.85■■■□□ 2.69
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms