RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 PRAM1Q96QH2 718 aa18.74■□□□□ 0.59
VPS28-216ENST00000533806 CDC42BPGQ6DT37 1551 aa18.73■□□□□ 0.59
VPS28-216ENST00000533806 TRAK1Q9UPV9 953 aa18.73■□□□□ 0.59
VPS28-216ENST00000533806 KIAA1210Q9ULL0 1709 aa18.72■□□□□ 0.59
VPS28-216ENST00000533806 NBPF8Q3BBV2 869 aa18.69■□□□□ 0.58
VPS28-216ENST00000533806 ORAI2Q96SN7 254 aa18.69■□□□□ 0.58
VPS28-216ENST00000533806 AHDC1Q5TGY3 1603 aaPredicted RBP18.69■□□□□ 0.58
VPS28-216ENST00000533806 POGKQ9P215 609 aa18.68■□□□□ 0.58
VPS28-216ENST00000533806 SAFB2Q14151 953 aaKnown RBP eCLIP18.67■□□□□ 0.58
VPS28-216ENST00000533806 CLSPNQ9HAW4 1339 aa18.67■□□□□ 0.58
VPS28-216ENST00000533806 COL16A1Q07092 1604 aaPredicted RBP18.66■□□□□ 0.58
VPS28-216ENST00000533806 TONSLQ96HA7 1378 aa18.65■□□□□ 0.58
VPS28-216ENST00000533806 ADGRB2O60241 1585 aa18.64■□□□□ 0.58
VPS28-216ENST00000533806 DDX17Q92841 729 aaKnown RBP18.63■□□□□ 0.57
VPS28-216ENST00000533806 GPRASP1Q5JY77 1395 aa18.63■□□□□ 0.57
VPS28-216ENST00000533806 TRPM1Q7Z4N2 1603 aa18.63■□□□□ 0.57
VPS28-216ENST00000533806 PHLPP1O60346 1717 aa18.63■□□□□ 0.57
VPS28-216ENST00000533806 MINK1Q8N4C8 1332 aaPredicted RBP18.62■□□□□ 0.57
VPS28-216ENST00000533806 NHSL1Q5SYE7 1610 aa18.62■□□□□ 0.57
VPS28-216ENST00000533806 ARHGEF28Q8N1W1 1705 aaKnown RBP18.62■□□□□ 0.57
VPS28-216ENST00000533806 FMN2Q9NZ56 1722 aa18.62■□□□□ 0.57
VPS28-216ENST00000533806 JCADQ9P266 1359 aa18.61■□□□□ 0.57
VPS28-216ENST00000533806 SOS2Q07890 1332 aaPredicted RBP18.61■□□□□ 0.57
VPS28-216ENST00000533806 NUTM2FA1L443 756 aa18.61■□□□□ 0.57
VPS28-216ENST00000533806 ESCO1Q5FWF5 840 aa18.61■□□□□ 0.57
VPS28-216ENST00000533806 HIRIP3Q9BW71 556 aaPredicted RBP18.61■□□□□ 0.57
VPS28-216ENST00000533806 WASLO00401 505 aaPredicted RBP18.6■□□□□ 0.57
VPS28-216ENST00000533806 ANKARQ7Z5J8 1434 aa18.59■□□□□ 0.57
VPS28-216ENST00000533806 TIMELESSQ9UNS1 1208 aa18.59■□□□□ 0.57
VPS28-216ENST00000533806 ROCK2O75116 1388 aaKnown RBP18.58■□□□□ 0.57
VPS28-216ENST00000533806 LRRC59Q96AG4 307 aaKnown RBP18.58■□□□□ 0.56
VPS28-216ENST00000533806 PRR36Q9H6K5 1346 aa18.57■□□□□ 0.56
VPS28-216ENST00000533806 MED1Q15648 1581 aaPredicted RBP18.57■□□□□ 0.56
VPS28-216ENST00000533806 FOXO3O43524 673 aa18.57■□□□□ 0.56
VPS28-216ENST00000533806 CENPJQ9HC77 1338 aaPredicted RBP18.56■□□□□ 0.56
VPS28-216ENST00000533806 RALGAPBQ86X10 1494 aa18.56■□□□□ 0.56
VPS28-216ENST00000533806 PXDNQ92626 1479 aa18.56■□□□□ 0.56
VPS28-216ENST00000533806 USP32Q8NFA0 1604 aa18.56■□□□□ 0.56
VPS28-216ENST00000533806 NPHP3Q7Z494 1330 aa18.55■□□□□ 0.56
VPS28-216ENST00000533806 DISP3Q9P2K9 1392 aa18.55■□□□□ 0.56
VPS28-216ENST00000533806 TULP4Q9NRJ4 1543 aa18.54■□□□□ 0.56
VPS28-216ENST00000533806 PHF8Q9UPP1 1060 aa18.54■□□□□ 0.56
VPS28-216ENST00000533806 EIF3AQ14152 1382 aaKnown RBP18.54■□□□□ 0.56
VPS28-216ENST00000533806 SPATA31A6Q5VVP1 1343 aa18.53■□□□□ 0.56
VPS28-216ENST00000533806 CDK19Q9BWU1 502 aa18.53■□□□□ 0.56
VPS28-216ENST00000533806 PNPLA6Q8IY17 1366 aa18.53■□□□□ 0.56
VPS28-216ENST00000533806 SHPRHQ149N8 1683 aa18.51■□□□□ 0.55
VPS28-216ENST00000533806 CCER1Q8TC90 406 aaPredicted RBP18.51■□□□□ 0.55
VPS28-216ENST00000533806 CARD11Q9BXL7 1154 aa18.51■□□□□ 0.55
VPS28-216ENST00000533806 ATP7BP35670 1465 aa18.51■□□□□ 0.55
VPS28-216ENST00000533806 NUDT16Q96DE0 195 aaKnown RBP18.5■□□□□ 0.55
VPS28-216ENST00000533806 KIF1AQ12756 1690 aa18.5■□□□□ 0.55
VPS28-216ENST00000533806 LRP6O75581 1613 aa18.49■□□□□ 0.55
VPS28-216ENST00000533806 XPCQ01831 940 aaPredicted RBP18.49■□□□□ 0.55
VPS28-216ENST00000533806 RGS17Q9UGC6 210 aaPredicted RBP18.49■□□□□ 0.55
VPS28-216ENST00000533806 RGPD8O14715 1765 aaPredicted RBP18.48■□□□□ 0.55
VPS28-216ENST00000533806 KRT28Q7Z3Y7 464 aa18.48■□□□□ 0.55
VPS28-216ENST00000533806 PMFBP1Q8TBY8 1022 aa18.48■□□□□ 0.55
VPS28-216ENST00000533806 SBNO2Q9Y2G9 1366 aa18.47■□□□□ 0.55
VPS28-216ENST00000533806 SPATA31A3Q5VYP0 1347 aa18.47■□□□□ 0.55
VPS28-216ENST00000533806 PLEKHG3A1L390 1219 aa18.46■□□□□ 0.55
VPS28-216ENST00000533806 CCDC61Q9Y6R9 512 aa18.46■□□□□ 0.55
VPS28-216ENST00000533806 QRICH2Q9H0J4 1663 aa18.45■□□□□ 0.54
VPS28-216ENST00000533806 SBNO1A3KN83 1393 aa18.44■□□□□ 0.54
VPS28-216ENST00000533806 PSME1Q06323 249 aa18.44■□□□□ 0.54
VPS28-216ENST00000533806 CABP2Q9NPB3 220 aa18.44■□□□□ 0.54
VPS28-216ENST00000533806 POLR3AO14802 1390 aaPredicted RBP18.43■□□□□ 0.54
VPS28-216ENST00000533806 COL22A1Q8NFW1 1626 aaPredicted RBP18.43■□□□□ 0.54
VPS28-216ENST00000533806 ILDR2Q71H61 639 aa18.43■□□□□ 0.54
VPS28-216ENST00000533806 EVC2Q86UK5 1308 aa18.43■□□□□ 0.54
VPS28-216ENST00000533806 SRPK2P78362 688 aaKnown RBP18.42■□□□□ 0.54
VPS28-216ENST00000533806 TOPAZ1Q8N9V7 1692 aa18.41■□□□□ 0.54
VPS28-216ENST00000533806 NUTM2BA6NNL0 878 aaPredicted RBP18.41■□□□□ 0.54
VPS28-216ENST00000533806 NUTM2EB1AL46 878 aaPredicted RBP18.41■□□□□ 0.54
VPS28-216ENST00000533806 NUTM2AQ8IVF1 878 aaPredicted RBP18.41■□□□□ 0.54
VPS28-216ENST00000533806 TESK2Q96S53 571 aa18.41■□□□□ 0.54
VPS28-216ENST00000533806 TNS3Q68CZ2 1445 aa18.4■□□□□ 0.54
VPS28-216ENST00000533806 NGDNQ8NEJ9 315 aaKnown RBP18.4■□□□□ 0.54
VPS28-216ENST00000533806 PHF23Q9BUL5 403 aaPredicted RBP18.4■□□□□ 0.54
VPS28-216ENST00000533806 ACEP12821 1306 aa18.39■□□□□ 0.53
VPS28-216ENST00000533806 ST20-MTHFSA0A0A6YYL1 179 aa18.38■□□□□ 0.53
VPS28-216ENST00000533806 PPIP5K1Q6PFW1 1433 aa18.38■□□□□ 0.53
VPS28-216ENST00000533806 TRPM3Q9HCF6 1732 aaPredicted RBP18.37■□□□□ 0.53
VPS28-216ENST00000533806 CABP1Q9NZU7 370 aa18.37■□□□□ 0.53
VPS28-216ENST00000533806 ITSN1Q15811 1721 aa18.37■□□□□ 0.53
VPS28-216ENST00000533806 ARHGEF10O15013 1369 aa18.36■□□□□ 0.53
VPS28-216ENST00000533806 POTEAQ6S8J7 498 aa18.36■□□□□ 0.53
VPS28-216ENST00000533806 PUS7Q96PZ0 661 aaKnown RBP18.36■□□□□ 0.53
VPS28-216ENST00000533806 MEX3CQ5U5Q3 659 aaKnown RBP18.35■□□□□ 0.53
VPS28-216ENST00000533806 USP47Q96K76 1375 aa18.34■□□□□ 0.53
VPS28-216ENST00000533806 ATAD2Q6PL18 1390 aa18.33■□□□□ 0.53
VPS28-216ENST00000533806 ADAMTS2O95450 1211 aa18.33■□□□□ 0.52
VPS28-216ENST00000533806 ALS2Q96Q42 1657 aa18.33■□□□□ 0.52
VPS28-216ENST00000533806 SLC24A1O60721 1099 aa18.32■□□□□ 0.52
VPS28-216ENST00000533806 CABLES1Q8TDN4 633 aa18.32■□□□□ 0.52
VPS28-216ENST00000533806 SSH2Q76I76 1423 aa18.32■□□□□ 0.52
VPS28-216ENST00000533806 BRD4O60885 1362 aaPredicted RBP18.31■□□□□ 0.52
VPS28-216ENST00000533806 FNBP4Q8N3X1 1017 aaPredicted RBP18.31■□□□□ 0.52
VPS28-216ENST00000533806 C8orf37Q96NL8 207 aa18.31■□□□□ 0.52
VPS28-216ENST00000533806 CPSF1Q10570 1443 aaKnown RBP18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms