RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 ANO8Q9HCE9 1232 aaPredicted RBP24.98■■□□□ 1.59
VPS28-213ENST00000530983 HECW2Q9P2P5 1572 aa24.98■■□□□ 1.59
VPS28-213ENST00000530983 MORC1Q86VD1 984 aa24.98■■□□□ 1.59
VPS28-213ENST00000530983 OSCARQ8IYS5 282 aa24.98■■□□□ 1.59
VPS28-213ENST00000530983 RGS3P49796 1198 aa24.97■■□□□ 1.59
VPS28-213ENST00000530983 IL27Q8NEV9 243 aa24.96■■□□□ 1.59
VPS28-213ENST00000530983 IQSEC2Q5JU85 1478 aa24.96■■□□□ 1.59
VPS28-213ENST00000530983 MLH3Q9UHC1 1453 aa24.96■■□□□ 1.59
VPS28-213ENST00000530983 PDE3AQ14432 1141 aa24.96■■□□□ 1.59
VPS28-213ENST00000530983 CD109Q6YHK3 1445 aa24.96■■□□□ 1.59
VPS28-213ENST00000530983 TNNT2P45379 298 aaPredicted RBP24.95■■□□□ 1.58
VPS28-213ENST00000530983 TMEM132EQ6IEE7 984 aa24.95■■□□□ 1.58
VPS28-213ENST00000530983 NINLQ9Y2I6 1382 aa24.94■■□□□ 1.58
VPS28-213ENST00000530983 GGT6Q6P531 493 aa24.94■■□□□ 1.58
VPS28-213ENST00000530983 CGNL1Q0VF96 1302 aa24.94■■□□□ 1.58
VPS28-213ENST00000530983 VIRMAQ69YN4 1812 aaKnown RBP24.94■■□□□ 1.58
VPS28-213ENST00000530983 ABCC3O15438 1527 aa24.94■■□□□ 1.58
VPS28-213ENST00000530983 IGHDP01880 384 aa24.94■■□□□ 1.58
VPS28-213ENST00000530983 RUNDC1Q96C34 613 aa24.92■■□□□ 1.58
VPS28-213ENST00000530983 GLI2P10070 1586 aa24.92■■□□□ 1.58
VPS28-213ENST00000530983 SIGLEC1Q9BZZ2 1709 aa24.92■■□□□ 1.58
VPS28-213ENST00000530983 RPGRIP1LQ68CZ1 1315 aa24.92■■□□□ 1.58
VPS28-213ENST00000530983 SLC4A3P48751 1232 aa24.91■■□□□ 1.58
VPS28-213ENST00000530983 PHF23Q9BUL5 403 aaPredicted RBP24.91■■□□□ 1.58
VPS28-213ENST00000530983 CAMSAP1Q5T5Y3 1602 aa24.9■■□□□ 1.58
VPS28-213ENST00000530983 ARHGEF28Q8N1W1 1705 aaKnown RBP24.9■■□□□ 1.58
VPS28-213ENST00000530983 NEUROD2Q15784 382 aa24.9■■□□□ 1.58
VPS28-213ENST00000530983 RRP7AQ9Y3A4 280 aaKnown RBP24.9■■□□□ 1.58
VPS28-213ENST00000530983 TCP11L2Q8N4U5 519 aa24.89■■□□□ 1.58
VPS28-213ENST00000530983 PANK1Q8TE04 598 aa24.89■■□□□ 1.58
VPS28-213ENST00000530983 CLUAP1Q96AJ1 413 aa24.89■■□□□ 1.57
VPS28-213ENST00000530983 PIK3C2BO00750 1634 aa24.88■■□□□ 1.57
VPS28-213ENST00000530983 COG6Q9Y2V7 657 aa24.88■■□□□ 1.57
VPS28-213ENST00000530983 TULP4Q9NRJ4 1543 aa24.88■■□□□ 1.57
VPS28-213ENST00000530983 MTHFSP49914 203 aa24.87■■□□□ 1.57
VPS28-213ENST00000530983 CANXP27824 592 aaKnown RBP24.87■■□□□ 1.57
VPS28-213ENST00000530983 NEXMIFQ5QGS0 1516 aa24.85■■□□□ 1.57
VPS28-213ENST00000530983 RARSP54136 660 aaKnown RBP24.85■■□□□ 1.57
VPS28-213ENST00000530983 WDR63Q8IWG1 891 aa24.84■■□□□ 1.57
VPS28-213ENST00000530983 FRAT1Q92837 279 aaPredicted RBP24.83■■□□□ 1.57
VPS28-213ENST00000530983 PUS7Q96PZ0 661 aaKnown RBP24.83■■□□□ 1.57
VPS28-213ENST00000530983 ANKRD36BQ8N2N9 1353 aa24.83■■□□□ 1.57
VPS28-213ENST00000530983 NEO1Q92859 1461 aa24.83■■□□□ 1.57
VPS28-213ENST00000530983 RTN4Q9NQC3 1192 aaKnown RBP24.83■■□□□ 1.56
VPS28-213ENST00000530983 DAXXQ9UER7 740 aaPredicted RBP24.83■■□□□ 1.56
VPS28-213ENST00000530983 EVC2Q86UK5 1308 aa24.82■■□□□ 1.56
VPS28-213ENST00000530983 CCDC27Q2M243 656 aa24.81■■□□□ 1.56
VPS28-213ENST00000530983 NUTM2DQ5VT03 806 aaPredicted RBP24.81■■□□□ 1.56
VPS28-213ENST00000530983 CFAP53Q96M91 514 aa24.81■■□□□ 1.56
VPS28-213ENST00000530983 NSD2O96028 1365 aa24.8■■□□□ 1.56
VPS28-213ENST00000530983 NFKBIBQ15653 356 aa24.8■■□□□ 1.56
VPS28-213ENST00000530983 MAPK8IP3Q9UPT6 1336 aa24.79■■□□□ 1.56
VPS28-213ENST00000530983 VGFO15240 615 aaPredicted RBP24.78■■□□□ 1.56
VPS28-213ENST00000530983 ADGRB2O60241 1585 aa24.78■■□□□ 1.56
VPS28-213ENST00000530983 RLBP1P12271 317 aa24.78■■□□□ 1.56
VPS28-213ENST00000530983 USP19O94966 1318 aa24.77■■□□□ 1.56
VPS28-213ENST00000530983 TNNQ9UQP3 1299 aa24.77■■□□□ 1.56
VPS28-213ENST00000530983 DIP2CQ9Y2E4 1556 aa24.76■■□□□ 1.55
VPS28-213ENST00000530983 CABP2Q9NPB3 220 aa24.75■■□□□ 1.55
VPS28-213ENST00000530983 AAMPQ13685 434 aa24.75■■□□□ 1.55
VPS28-213ENST00000530983 NCBP3Q53F19 620 aaKnown RBP24.75■■□□□ 1.55
VPS28-213ENST00000530983 BCL2L13Q9BXK5 485 aa24.75■■□□□ 1.55
VPS28-213ENST00000530983 RAPGEF3O95398 923 aa24.74■■□□□ 1.55
VPS28-213ENST00000530983 U2AF1L5P0DN76 240 aaPredicted RBP24.73■■□□□ 1.55
VPS28-213ENST00000530983 U2AF1Q01081 240 aaKnown RBP eCLIP24.73■■□□□ 1.55
VPS28-213ENST00000530983 PCDHB15Q9Y5E8 787 aa24.73■■□□□ 1.55
VPS28-213ENST00000530983 PMFBP1Q8TBY8 1022 aa24.72■■□□□ 1.55
VPS28-213ENST00000530983 ARHGAP31Q2M1Z3 1444 aa24.72■■□□□ 1.55
VPS28-213ENST00000530983 SEC24BO95487 1268 aa24.72■■□□□ 1.55
VPS28-213ENST00000530983 MYO5BQ9ULV0 1848 aa24.72■■□□□ 1.55
VPS28-213ENST00000530983 MYH16Q9H6N6 1097 aa24.71■■□□□ 1.55
VPS28-213ENST00000530983 A0A1W2PP64 1363 aa24.71■■□□□ 1.55
VPS28-213ENST00000530983 ABCC11Q96J66 1382 aa24.71■■□□□ 1.55
VPS28-213ENST00000530983 SAFB2Q14151 953 aaKnown RBP eCLIP24.7■■□□□ 1.54
VPS28-213ENST00000530983 ZFYVE9O95405 1425 aa24.7■■□□□ 1.54
VPS28-213ENST00000530983 IDI1Q13907 227 aa24.69■■□□□ 1.54
VPS28-213ENST00000530983 NLRP1Q9C000 1473 aa24.69■■□□□ 1.54
VPS28-213ENST00000530983 GSE1Q14687 1217 aa24.67■■□□□ 1.54
VPS28-213ENST00000530983 RICTORQ6R327 1708 aa24.66■■□□□ 1.54
VPS28-213ENST00000530983 COL3A1P02461 1466 aaPredicted RBP24.66■■□□□ 1.54
VPS28-213ENST00000530983 ANKRD26Q9UPS8 1709 aa24.66■■□□□ 1.54
VPS28-213ENST00000530983 PTPRMP28827 1452 aa24.65■■□□□ 1.54
VPS28-213ENST00000530983 ZMYM3Q14202 1370 aa24.65■■□□□ 1.54
VPS28-213ENST00000530983 PLEKHF1Q96S99 279 aa24.64■■□□□ 1.54
VPS28-213ENST00000530983 STK26Q9P289 416 aa24.64■■□□□ 1.53
VPS28-213ENST00000530983 PDZRN3Q9UPQ7 1066 aa24.63■■□□□ 1.53
VPS28-213ENST00000530983 TMEM131LA2VDJ0 1609 aa24.63■■□□□ 1.53
VPS28-213ENST00000530983 SRPK2P78362 688 aaKnown RBP24.63■■□□□ 1.53
VPS28-213ENST00000530983 MVPQ14764 893 aaKnown RBP24.63■■□□□ 1.53
VPS28-213ENST00000530983 GGNBP2Q9H3C7 697 aa24.63■■□□□ 1.53
VPS28-213ENST00000530983 CLTCQ00610 1675 aaKnown RBP24.62■■□□□ 1.53
VPS28-213ENST00000530983 PREX1Q8TCU6 1659 aa24.62■■□□□ 1.53
VPS28-213ENST00000530983 TSR2Q969E8 191 aaKnown RBP24.62■■□□□ 1.53
VPS28-213ENST00000530983 SLC52A1Q9NWF4 448 aa24.62■■□□□ 1.53
VPS28-213ENST00000530983 FRAT2O75474 233 aaPredicted RBP24.62■■□□□ 1.53
VPS28-213ENST00000530983 CD163L1Q9NR16 1453 aa24.62■■□□□ 1.53
VPS28-213ENST00000530983 RWDD1Q9H446 243 aaPredicted RBP24.61■■□□□ 1.53
VPS28-213ENST00000530983 SENP3Q9H4L4 574 aaPredicted RBP24.61■■□□□ 1.53
VPS28-213ENST00000530983 CT47B1P0C2W7 299 aaPredicted RBP24.61■■□□□ 1.53
VPS28-213ENST00000530983 ZKSCAN2Q63HK3 967 aa24.61■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 105.6 ms