RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 DLC1Q96QB1 1528 aa30■■■□□ 2.39
VPS28-206ENST00000526734 WAPLQ7Z5K2 1190 aa29.98■■■□□ 2.39
VPS28-206ENST00000526734 KDM2AQ9Y2K7 1162 aa29.98■■■□□ 2.39
VPS28-206ENST00000526734 ADGRB1O14514 1584 aa29.98■■■□□ 2.39
VPS28-206ENST00000526734 SHPRHQ149N8 1683 aa29.97■■■□□ 2.39
VPS28-206ENST00000526734 PLEKHH1Q9ULM0 1364 aa29.95■■■□□ 2.39
VPS28-206ENST00000526734 LRRC59Q96AG4 307 aaKnown RBP29.94■■■□□ 2.38
VPS28-206ENST00000526734 ORAI2Q96SN7 254 aa29.9■■■□□ 2.38
VPS28-206ENST00000526734 PRAM1Q96QH2 718 aa29.89■■■□□ 2.38
VPS28-206ENST00000526734 TRIM26Q12899 539 aaPredicted RBP29.87■■■□□ 2.37
VPS28-206ENST00000526734 POGKQ9P215 609 aa29.87■■■□□ 2.37
VPS28-206ENST00000526734 FMN2Q9NZ56 1722 aa29.87■■■□□ 2.37
VPS28-206ENST00000526734 SOCS7O14512 581 aa29.86■■■□□ 2.37
VPS28-206ENST00000526734 SOS2Q07890 1332 aaPredicted RBP29.86■■■□□ 2.37
VPS28-206ENST00000526734 NPHP3Q7Z494 1330 aa29.86■■■□□ 2.37
VPS28-206ENST00000526734 ESCO1Q5FWF5 840 aa29.85■■■□□ 2.37
VPS28-206ENST00000526734 ADGRB2O60241 1585 aa29.84■■■□□ 2.37
VPS28-206ENST00000526734 KIAA1210Q9ULL0 1709 aa29.84■■■□□ 2.37
VPS28-206ENST00000526734 TRAK1Q9UPV9 953 aa29.83■■■□□ 2.37
VPS28-206ENST00000526734 LRP6O75581 1613 aa29.82■■■□□ 2.36
VPS28-206ENST00000526734 PNPLA6Q8IY17 1366 aa29.82■■■□□ 2.36
VPS28-206ENST00000526734 DDX17Q92841 729 aaKnown RBP29.82■■■□□ 2.36
VPS28-206ENST00000526734 RGS17Q9UGC6 210 aaPredicted RBP29.81■■■□□ 2.36
VPS28-206ENST00000526734 KIF1AQ12756 1690 aa29.8■■■□□ 2.36
VPS28-206ENST00000526734 MEX3CQ5U5Q3 659 aaKnown RBP29.8■■■□□ 2.36
VPS28-206ENST00000526734 EIF3AQ14152 1382 aaKnown RBP29.79■■■□□ 2.36
VPS28-206ENST00000526734 ANKARQ7Z5J8 1434 aa29.79■■■□□ 2.36
VPS28-206ENST00000526734 SAFB2Q14151 953 aaKnown RBP eCLIP29.78■■■□□ 2.36
VPS28-206ENST00000526734 NUTM2FA1L443 756 aa29.76■■■□□ 2.35
VPS28-206ENST00000526734 PXDNQ92626 1479 aa29.75■■■□□ 2.35
VPS28-206ENST00000526734 FOXO3O43524 673 aa29.73■■■□□ 2.35
VPS28-206ENST00000526734 ARHGEF28Q8N1W1 1705 aaKnown RBP29.72■■■□□ 2.35
VPS28-206ENST00000526734 NUTM2BA6NNL0 878 aaPredicted RBP29.72■■■□□ 2.35
VPS28-206ENST00000526734 NUTM2EB1AL46 878 aaPredicted RBP29.72■■■□□ 2.35
VPS28-206ENST00000526734 NUTM2AQ8IVF1 878 aaPredicted RBP29.72■■■□□ 2.35
VPS28-206ENST00000526734 L3MBTL2Q969R5 705 aa29.72■■■□□ 2.35
VPS28-206ENST00000526734 ZNF772Q68DY9 489 aaPredicted RBP29.7■■■□□ 2.35
VPS28-206ENST00000526734 SIN3AQ96ST3 1273 aa29.7■■■□□ 2.35
VPS28-206ENST00000526734 PHF8Q9UPP1 1060 aa29.7■■■□□ 2.35
VPS28-206ENST00000526734 COL22A1Q8NFW1 1626 aaPredicted RBP29.69■■■□□ 2.34
VPS28-206ENST00000526734 MINK1Q8N4C8 1332 aaPredicted RBP29.69■■■□□ 2.34
VPS28-206ENST00000526734 TULP4Q9NRJ4 1543 aa29.68■■■□□ 2.34
VPS28-206ENST00000526734 POTEAQ6S8J7 498 aa29.67■■■□□ 2.34
VPS28-206ENST00000526734 WASLO00401 505 aaPredicted RBP29.66■■■□□ 2.34
VPS28-206ENST00000526734 NEUROD1Q13562 356 aa29.66■■■□□ 2.34
VPS28-206ENST00000526734 HIRIP3Q9BW71 556 aaPredicted RBP29.65■■■□□ 2.34
VPS28-206ENST00000526734 PSME1Q06323 249 aa29.64■■■□□ 2.34
VPS28-206ENST00000526734 USP32Q8NFA0 1604 aa29.63■■■□□ 2.33
VPS28-206ENST00000526734 NBPF1Q3BBV0 1214 aa29.63■■■□□ 2.33
VPS28-206ENST00000526734 KRT28Q7Z3Y7 464 aa29.62■■■□□ 2.33
VPS28-206ENST00000526734 XPCQ01831 940 aaPredicted RBP29.61■■■□□ 2.33
VPS28-206ENST00000526734 SPATA31A3Q5VYP0 1347 aa29.61■■■□□ 2.33
VPS28-206ENST00000526734 SBNO1A3KN83 1393 aa29.6■■■□□ 2.33
VPS28-206ENST00000526734 RGPD8O14715 1765 aaPredicted RBP29.59■■■□□ 2.33
VPS28-206ENST00000526734 AFF2P51816 1311 aa29.58■■■□□ 2.33
VPS28-206ENST00000526734 TNS3Q68CZ2 1445 aa29.58■■■□□ 2.33
VPS28-206ENST00000526734 PRR36Q9H6K5 1346 aa29.57■■■□□ 2.32
VPS28-206ENST00000526734 C8orf37Q96NL8 207 aa29.57■■■□□ 2.32
VPS28-206ENST00000526734 TRPM1Q7Z4N2 1603 aa29.56■■■□□ 2.32
VPS28-206ENST00000526734 CENPJQ9HC77 1338 aaPredicted RBP29.56■■■□□ 2.32
VPS28-206ENST00000526734 ATP7BP35670 1465 aa29.55■■■□□ 2.32
VPS28-206ENST00000526734 ARHGEF10O15013 1369 aa29.54■■■□□ 2.32
VPS28-206ENST00000526734 GPRASP1Q5JY77 1395 aa29.54■■■□□ 2.32
VPS28-206ENST00000526734 ADAMTS2O95450 1211 aa29.54■■■□□ 2.32
VPS28-206ENST00000526734 TONSLQ96HA7 1378 aa29.53■■■□□ 2.32
VPS28-206ENST00000526734 PMFBP1Q8TBY8 1022 aa29.53■■■□□ 2.32
VPS28-206ENST00000526734 ITSN1Q15811 1721 aa29.53■■■□□ 2.32
VPS28-206ENST00000526734 ROCK2O75116 1388 aaKnown RBP29.52■■■□□ 2.32
VPS28-206ENST00000526734 NGLY1Q96IV0 654 aa29.52■■■□□ 2.32
VPS28-206ENST00000526734 NUDT16Q96DE0 195 aaKnown RBP29.5■■■□□ 2.31
VPS28-206ENST00000526734 CDK19Q9BWU1 502 aa29.5■■■□□ 2.31
VPS28-206ENST00000526734 CDK12Q9NYV4 1490 aaPredicted RBP29.48■■■□□ 2.31
VPS28-206ENST00000526734 RXRBP28702 533 aa29.47■■■□□ 2.31
VPS28-206ENST00000526734 FNBP4Q8N3X1 1017 aaPredicted RBP29.47■■■□□ 2.31
VPS28-206ENST00000526734 NGDNQ8NEJ9 315 aaKnown RBP29.47■■■□□ 2.31
VPS28-206ENST00000526734 CCDC61Q9Y6R9 512 aa29.45■■■□□ 2.31
VPS28-206ENST00000526734 QRICH2Q9H0J4 1663 aa29.44■■■□□ 2.3
VPS28-206ENST00000526734 TRPM3Q9HCF6 1732 aaPredicted RBP29.44■■■□□ 2.3
VPS28-206ENST00000526734 TOPAZ1Q8N9V7 1692 aa29.44■■■□□ 2.3
VPS28-206ENST00000526734 MARF1Q9Y4F3 1742 aaKnown RBP29.43■■■□□ 2.3
VPS28-206ENST00000526734 NBPF8Q3BBV2 869 aa29.42■■■□□ 2.3
VPS28-206ENST00000526734 QTRT2Q9H974 415 aaKnown RBP29.42■■■□□ 2.3
VPS28-206ENST00000526734 USP21Q9UK80 565 aa29.42■■■□□ 2.3
VPS28-206ENST00000526734 POLR3AO14802 1390 aaPredicted RBP29.41■■■□□ 2.3
VPS28-206ENST00000526734 HAP1P54257 671 aaPredicted RBP29.41■■■□□ 2.3
VPS28-206ENST00000526734 RBM6P78332 1123 aaKnown RBP29.41■■■□□ 2.3
VPS28-206ENST00000526734 LMOD2Q6P5Q4 547 aa29.41■■■□□ 2.3
VPS28-206ENST00000526734 RALGAPBQ86X10 1494 aa29.41■■■□□ 2.3
VPS28-206ENST00000526734 PLEKHG3A1L390 1219 aa29.4■■■□□ 2.3
VPS28-206ENST00000526734 SRPK2P78362 688 aaKnown RBP29.4■■■□□ 2.3
VPS28-206ENST00000526734 TRPC5Q9UL62 973 aaPredicted RBP29.4■■■□□ 2.3
VPS28-206ENST00000526734 ALS2Q96Q42 1657 aa29.38■■■□□ 2.29
VPS28-206ENST00000526734 EVC2Q86UK5 1308 aa29.38■■■□□ 2.29
VPS28-206ENST00000526734 ATRNO75882 1429 aa29.36■■■□□ 2.29
VPS28-206ENST00000526734 ABCA3Q99758 1704 aa29.34■■■□□ 2.29
VPS28-206ENST00000526734 CARD11Q9BXL7 1154 aa29.34■■■□□ 2.29
VPS28-206ENST00000526734 ACEP12821 1306 aa29.34■■■□□ 2.29
VPS28-206ENST00000526734 CLSPNQ9HAW4 1339 aa29.34■■■□□ 2.29
VPS28-206ENST00000526734 SBNO2Q9Y2G9 1366 aa29.34■■■□□ 2.29
VPS28-206ENST00000526734 BCL9LQ86UU0 1499 aa29.34■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms