RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 CFAP65Q6ZU64 1925 aaKnown RBP27.7■■■□□ 2.02
VPS28-205ENST00000526204 RIMBP3CA6NJZ7 1639 aa27.69■■■□□ 2.02
VPS28-205ENST00000526204 RIMBP3BA6NNM3 1639 aa27.69■■■□□ 2.02
VPS28-205ENST00000526204 RIMBP3Q9UFD9 1639 aa27.69■■■□□ 2.02
VPS28-205ENST00000526204 SPINK5Q9NQ38 1064 aaPredicted RBP27.69■■■□□ 2.02
VPS28-205ENST00000526204 GLI2P10070 1586 aa27.68■■■□□ 2.02
VPS28-205ENST00000526204 NEXMIFQ5QGS0 1516 aa27.68■■■□□ 2.02
VPS28-205ENST00000526204 SIGLEC1Q9BZZ2 1709 aa27.67■■■□□ 2.02
VPS28-205ENST00000526204 SLC52A1Q9NWF4 448 aa27.66■■■□□ 2.02
VPS28-205ENST00000526204 ZFYVE9O95405 1425 aa27.66■■■□□ 2.02
VPS28-205ENST00000526204 NSD2O96028 1365 aa27.65■■■□□ 2.02
VPS28-205ENST00000526204 WWC1Q8IX03 1113 aa27.64■■■□□ 2.02
VPS28-205ENST00000526204 RUNDC1Q96C34 613 aa27.64■■■□□ 2.01
VPS28-205ENST00000526204 ANKRD36BQ8N2N9 1353 aa27.63■■■□□ 2.01
VPS28-205ENST00000526204 CFAP53Q96M91 514 aa27.62■■■□□ 2.01
VPS28-205ENST00000526204 IDI1Q13907 227 aa27.61■■■□□ 2.01
VPS28-205ENST00000526204 NINLQ9Y2I6 1382 aa27.61■■■□□ 2.01
VPS28-205ENST00000526204 NPM2Q86SE8 214 aaKnown RBP27.61■■■□□ 2.01
VPS28-205ENST00000526204 SHPRHQ149N8 1683 aa27.6■■■□□ 2.01
VPS28-205ENST00000526204 RICTORQ6R327 1708 aa27.6■■■□□ 2.01
VPS28-205ENST00000526204 ARHGEF28Q8N1W1 1705 aaKnown RBP27.59■■■□□ 2.01
VPS28-205ENST00000526204 TULP4Q9NRJ4 1543 aa27.59■■■□□ 2.01
VPS28-205ENST00000526204 TNNT2P45379 298 aaPredicted RBP27.59■■■□□ 2.01
VPS28-205ENST00000526204 BCAR3O75815 825 aa27.58■■■□□ 2.01
VPS28-205ENST00000526204 PDE3AQ14432 1141 aa27.58■■■□□ 2.01
VPS28-205ENST00000526204 DMRT2Q9Y5R5 561 aa27.58■■■□□ 2.01
VPS28-205ENST00000526204 MTHFSP49914 203 aa27.58■■■□□ 2.01
VPS28-205ENST00000526204 NCBP3Q53F19 620 aaKnown RBP27.57■■■□□ 2
VPS28-205ENST00000526204 NUTM2DQ5VT03 806 aaPredicted RBP27.57■■■□□ 2
VPS28-205ENST00000526204 PHF23Q9BUL5 403 aaPredicted RBP27.55■■■□□ 2
VPS28-205ENST00000526204 WDR63Q8IWG1 891 aa27.55■■■□□ 2
VPS28-205ENST00000526204 IQSEC2Q5JU85 1478 aa27.55■■■□□ 2
VPS28-205ENST00000526204 CCDC27Q2M243 656 aa27.54■■■□□ 2
VPS28-205ENST00000526204 TCP11L2Q8N4U5 519 aa27.54■■■□□ 2
VPS28-205ENST00000526204 YEATS2Q9ULM3 1422 aa27.53■■■□□ 2
VPS28-205ENST00000526204 SKAP1Q86WV1 359 aa27.52■■■□□ 2
VPS28-205ENST00000526204 DDRGK1Q96HY6 314 aa27.51■■□□□ 1.99
VPS28-205ENST00000526204 NBR1Q14596 966 aa27.5■■□□□ 1.99
VPS28-205ENST00000526204 CABP2Q9NPB3 220 aa27.5■■□□□ 1.99
VPS28-205ENST00000526204 FAM161AQ3B820 660 aa27.48■■□□□ 1.99
VPS28-205ENST00000526204 NEUROD2Q15784 382 aa27.47■■□□□ 1.99
VPS28-205ENST00000526204 CANXP27824 592 aaKnown RBP27.47■■□□□ 1.99
VPS28-205ENST00000526204 ABCC11Q96J66 1382 aa27.47■■□□□ 1.99
VPS28-205ENST00000526204 TMEM131LA2VDJ0 1609 aa27.46■■□□□ 1.99
VPS28-205ENST00000526204 ATAD2Q6PL18 1390 aa27.46■■□□□ 1.99
VPS28-205ENST00000526204 AAMPQ13685 434 aa27.46■■□□□ 1.99
VPS28-205ENST00000526204 PREX1Q8TCU6 1659 aa27.46■■□□□ 1.99
VPS28-205ENST00000526204 RRP7AQ9Y3A4 280 aaKnown RBP27.45■■□□□ 1.98
VPS28-205ENST00000526204 SRPK2P78362 688 aaKnown RBP27.44■■□□□ 1.98
VPS28-205ENST00000526204 STK26Q9P289 416 aa27.44■■□□□ 1.98
VPS28-205ENST00000526204 SAFB2Q14151 953 aaKnown RBP eCLIP27.43■■□□□ 1.98
VPS28-205ENST00000526204 A0A1W2PP64 1363 aa27.43■■□□□ 1.98
VPS28-205ENST00000526204 RARSP54136 660 aaKnown RBP27.43■■□□□ 1.98
VPS28-205ENST00000526204 RTL5Q5HYW3 569 aaPredicted RBP27.43■■□□□ 1.98
VPS28-205ENST00000526204 PTPRMP28827 1452 aa27.43■■□□□ 1.98
VPS28-205ENST00000526204 MYH16Q9H6N6 1097 aa27.42■■□□□ 1.98
VPS28-205ENST00000526204 TERF2IPQ9NYB0 399 aa27.42■■□□□ 1.98
VPS28-205ENST00000526204 U2AF1L5P0DN76 240 aaPredicted RBP27.41■■□□□ 1.98
VPS28-205ENST00000526204 U2AF1Q01081 240 aaKnown RBP eCLIP27.41■■□□□ 1.98
VPS28-205ENST00000526204 CLUAP1Q96AJ1 413 aa27.41■■□□□ 1.98
VPS28-205ENST00000526204 YTHDC2Q9H6S0 1430 aaKnown RBP27.4■■□□□ 1.98
VPS28-205ENST00000526204 C8orf34Q49A92 452 aa27.4■■□□□ 1.98
VPS28-205ENST00000526204 MED14O60244 1454 aa27.38■■□□□ 1.97
VPS28-205ENST00000526204 DEKP35659 375 aaKnown RBP27.38■■□□□ 1.97
VPS28-205ENST00000526204 POGKQ9P215 609 aa27.38■■□□□ 1.97
VPS28-205ENST00000526204 PPP6R1Q9UPN7 881 aa27.38■■□□□ 1.97
VPS28-205ENST00000526204 PRAM1Q96QH2 718 aa27.38■■□□□ 1.97
VPS28-205ENST00000526204 FAM69CQ0P6D2 419 aa27.37■■□□□ 1.97
VPS28-205ENST00000526204 COG6Q9Y2V7 657 aa27.37■■□□□ 1.97
VPS28-205ENST00000526204 PANK1Q8TE04 598 aa27.37■■□□□ 1.97
VPS28-205ENST00000526204 RGS3P49796 1198 aa27.36■■□□□ 1.97
VPS28-205ENST00000526204 FRAT1Q92837 279 aaPredicted RBP27.36■■□□□ 1.97
VPS28-205ENST00000526204 MYO5BQ9ULV0 1848 aa27.36■■□□□ 1.97
VPS28-205ENST00000526204 IGHDP01880 384 aa27.35■■□□□ 1.97
VPS28-205ENST00000526204 ADGRB2O60241 1585 aa27.35■■□□□ 1.97
VPS28-205ENST00000526204 CLTCQ00610 1675 aaKnown RBP27.35■■□□□ 1.97
VPS28-205ENST00000526204 MINK1Q8N4C8 1332 aaPredicted RBP27.34■■□□□ 1.97
VPS28-205ENST00000526204 CT47B1P0C2W7 299 aaPredicted RBP27.34■■□□□ 1.97
VPS28-205ENST00000526204 PPM1GO15355 546 aaPredicted RBP27.34■■□□□ 1.97
VPS28-205ENST00000526204 FBXO31Q5XUX0 539 aaPredicted RBP27.34■■□□□ 1.97
VPS28-205ENST00000526204 DIP2BQ9P265 1576 aa27.34■■□□□ 1.97
VPS28-205ENST00000526204 USP35Q9P2H5 1018 aa27.33■■□□□ 1.97
VPS28-205ENST00000526204 HDGFL2Q7Z4V5 671 aaPredicted RBP27.32■■□□□ 1.96
VPS28-205ENST00000526204 GGNBP2Q9H3C7 697 aa27.32■■□□□ 1.96
VPS28-205ENST00000526204 MAPK8IP3Q9UPT6 1336 aa27.32■■□□□ 1.96
VPS28-205ENST00000526204 ALKQ9UM73 1620 aa27.32■■□□□ 1.96
VPS28-205ENST00000526204 FYB1O15117 783 aa27.32■■□□□ 1.96
VPS28-205ENST00000526204 STAG3Q9UJ98 1225 aa27.32■■□□□ 1.96
VPS28-205ENST00000526204 PMFBP1Q8TBY8 1022 aa27.31■■□□□ 1.96
VPS28-205ENST00000526204 REREQ9P2R6 1566 aa27.3■■□□□ 1.96
VPS28-205ENST00000526204 CD163L1Q9NR16 1453 aa27.3■■□□□ 1.96
VPS28-205ENST00000526204 PLEKHF1Q96S99 279 aa27.29■■□□□ 1.96
VPS28-205ENST00000526204 COL3A1P02461 1466 aaPredicted RBP27.29■■□□□ 1.96
VPS28-205ENST00000526204 AGLP35573 1532 aa27.28■■□□□ 1.96
VPS28-205ENST00000526204 NLRP1Q9C000 1473 aa27.28■■□□□ 1.96
VPS28-205ENST00000526204 ARHGEF40Q8TER5 1519 aa27.27■■□□□ 1.96
VPS28-205ENST00000526204 U2SURPO15042 1029 aaKnown RBP27.27■■□□□ 1.96
VPS28-205ENST00000526204 CDK19Q9BWU1 502 aa27.27■■□□□ 1.96
VPS28-205ENST00000526204 PNNQ9H307 717 aaKnown RBP27.27■■□□□ 1.96
VPS28-205ENST00000526204 BCL11AQ9H165 835 aa27.26■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms