RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	PRAM1	Q96QH2	718 aa		29.51	■■■□□ 2.31
CD44-222	ENST00000526025	EIF3A	Q14152	1382 aa	Known RBP	29.51	■■■□□ 2.31
CD44-222	ENST00000526025	CARD11	Q9BXL7	1154 aa		29.5	■■■□□ 2.31
CD44-222	ENST00000526025	POGK	Q9P215	609 aa		29.49	■■■□□ 2.31
CD44-222	ENST00000526025	CADPS2	Q86UW7	1296 aa		29.47	■■■□□ 2.31
CD44-222	ENST00000526025	QRICH2	Q9H0J4	1663 aa		29.47	■■■□□ 2.31
CD44-222	ENST00000526025	TOM1	O60784	492 aa		29.46	■■■□□ 2.31
CD44-222	ENST00000526025	CENPJ	Q9HC77	1338 aa	Predicted RBP	29.44	■■■□□ 2.3
CD44-222	ENST00000526025	FMN2	Q9NZ56	1722 aa		29.43	■■■□□ 2.3
CD44-222	ENST00000526025	ATF3	P18847	181 aa		29.43	■■■□□ 2.3
CD44-222	ENST00000526025	UBAP1L	F5GYI3	381 aa		29.41	■■■□□ 2.3
CD44-222	ENST00000526025	SBNO2	Q9Y2G9	1366 aa		29.39	■■■□□ 2.3
CD44-222	ENST00000526025	MST1R	Q04912	1400 aa		29.39	■■■□□ 2.3
CD44-222	ENST00000526025	SAFB2	Q14151	953 aa	Known RBP eCLIP	29.37	■■■□□ 2.29
CD44-222	ENST00000526025	FBXO41	Q8TF61	875 aa		29.37	■■■□□ 2.29
CD44-222	ENST00000526025	SLAIN2	Q9P270	581 aa		29.35	■■■□□ 2.29
CD44-222	ENST00000526025	USP47	Q96K76	1375 aa		29.35	■■■□□ 2.29
CD44-222	ENST00000526025	MINK1	Q8N4C8	1332 aa	Predicted RBP	29.34	■■■□□ 2.29
CD44-222	ENST00000526025	ANKAR	Q7Z5J8	1434 aa		29.32	■■■□□ 2.28
CD44-222	ENST00000526025	ROBO1	Q9Y6N7	1651 aa		29.31	■■■□□ 2.28
CD44-222	ENST00000526025	TULP4	Q9NRJ4	1543 aa		29.31	■■■□□ 2.28
CD44-222	ENST00000526025	C1orf167	Q5SNV9	1468 aa		29.31	■■■□□ 2.28
CD44-222	ENST00000526025	WASL	O00401	505 aa	Predicted RBP	29.3	■■■□□ 2.28
CD44-222	ENST00000526025	SLC24A1	O60721	1099 aa		29.29	■■■□□ 2.28
CD44-222	ENST00000526025	USP32	Q8NFA0	1604 aa		29.28	■■■□□ 2.28
CD44-222	ENST00000526025	ITSN1	Q15811	1721 aa		29.28	■■■□□ 2.28
CD44-222	ENST00000526025	RGPD8	O14715	1765 aa	Predicted RBP	29.27	■■■□□ 2.28
CD44-222	ENST00000526025	HIRIP3	Q9BW71	556 aa	Predicted RBP	29.27	■■■□□ 2.28
CD44-222	ENST00000526025	KIF1A	Q12756	1690 aa		29.25	■■■□□ 2.27
CD44-222	ENST00000526025	ZEB1	P37275	1124 aa	Predicted RBP	29.25	■■■□□ 2.27
CD44-222	ENST00000526025	ST20-MTHFS	A0A0A6YYL1	179 aa		29.24	■■■□□ 2.27
CD44-222	ENST00000526025	EVC2	Q86UK5	1308 aa		29.23	■■■□□ 2.27
CD44-222	ENST00000526025	TOPAZ1	Q8N9V7	1692 aa		29.23	■■■□□ 2.27
CD44-222	ENST00000526025	PIP4K2B	P78356	416 aa		29.22	■■■□□ 2.27
CD44-222	ENST00000526025	TESK2	Q96S53	571 aa		29.22	■■■□□ 2.27
CD44-222	ENST00000526025	ATP7B	P35670	1465 aa		29.22	■■■□□ 2.27
CD44-222	ENST00000526025	NHSL1	Q5SYE7	1610 aa		29.21	■■■□□ 2.27
CD44-222	ENST00000526025	EIF4G2	P78344	907 aa	Known RBP eCLIP	29.21	■■■□□ 2.27
CD44-222	ENST00000526025	CDK19	Q9BWU1	502 aa		29.21	■■■□□ 2.27
CD44-222	ENST00000526025	AHDC1	Q5TGY3	1603 aa	Predicted RBP	29.2	■■■□□ 2.27
CD44-222	ENST00000526025	BRINP3	Q76B58	766 aa		29.2	■■■□□ 2.26
CD44-222	ENST00000526025	SCAF1	Q9H7N4	1312 aa	Known RBP	29.18	■■■□□ 2.26
CD44-222	ENST00000526025	PRR36	Q9H6K5	1346 aa		29.17	■■■□□ 2.26
CD44-222	ENST00000526025	PUS7	Q96PZ0	661 aa	Known RBP	29.16	■■■□□ 2.26
CD44-222	ENST00000526025	NUDT16	Q96DE0	195 aa	Known RBP	29.14	■■■□□ 2.26
CD44-222	ENST00000526025	PHLPP1	O60346	1717 aa		29.14	■■■□□ 2.25
CD44-222	ENST00000526025	NUTM2F	A1L443	756 aa		29.13	■■■□□ 2.25
CD44-222	ENST00000526025	SRPK2	P78362	688 aa	Known RBP	29.13	■■■□□ 2.25
CD44-222	ENST00000526025	ESCO1	Q5FWF5	840 aa		29.13	■■■□□ 2.25
CD44-222	ENST00000526025	ORAI2	Q96SN7	254 aa		29.13	■■■□□ 2.25
CD44-222	ENST00000526025	ATAD2	Q6PL18	1390 aa		29.13	■■■□□ 2.25
CD44-222	ENST00000526025	HSPA5	P11021	654 aa	Known RBP	29.11	■■■□□ 2.25
CD44-222	ENST00000526025	CCDC61	Q9Y6R9	512 aa		29.11	■■■□□ 2.25
CD44-222	ENST00000526025	TMF1	P82094	1093 aa		29.1	■■■□□ 2.25
CD44-222	ENST00000526025	PHF8	Q9UPP1	1060 aa		29.1	■■■□□ 2.25
CD44-222	ENST00000526025	CABP2	Q9NPB3	220 aa		29.09	■■■□□ 2.25
CD44-222	ENST00000526025	COL16A1	Q07092	1604 aa	Predicted RBP	29.09	■■■□□ 2.25
CD44-222	ENST00000526025	NPHP3	Q7Z494	1330 aa		29.07	■■■□□ 2.24
CD44-222	ENST00000526025	PLEKHG3	A1L390	1219 aa		29.06	■■■□□ 2.24
CD44-222	ENST00000526025	CDCA8	Q53HL2	280 aa		29.06	■■■□□ 2.24
CD44-222	ENST00000526025	PPIP5K1	Q6PFW1	1433 aa		29.05	■■■□□ 2.24
CD44-222	ENST00000526025	DISP3	Q9P2K9	1392 aa		29.05	■■■□□ 2.24
CD44-222	ENST00000526025	POLR3A	O14802	1390 aa	Predicted RBP	29.04	■■■□□ 2.24
CD44-222	ENST00000526025	ILDR1	Q86SU0	546 aa	Predicted RBP	29.04	■■■□□ 2.24
CD44-222	ENST00000526025	PXDN	Q92626	1479 aa		29.04	■■■□□ 2.24
CD44-222	ENST00000526025	NINL	Q9Y2I6	1382 aa		29.03	■■■□□ 2.24
CD44-222	ENST00000526025	SOS2	Q07890	1332 aa	Predicted RBP	29.02	■■■□□ 2.24
CD44-222	ENST00000526025	HSPA1L	P34931	641 aa		29.02	■■■□□ 2.24
CD44-222	ENST00000526025	AKAP12	Q02952	1782 aa		29.01	■■■□□ 2.23
CD44-222	ENST00000526025	FOXO3	O43524	673 aa		28.99	■■■□□ 2.23
CD44-222	ENST00000526025	TRPM3	Q9HCF6	1732 aa	Predicted RBP	28.98	■■■□□ 2.23
CD44-222	ENST00000526025	PMFBP1	Q8TBY8	1022 aa		28.97	■■■□□ 2.23
CD44-222	ENST00000526025	SHPRH	Q149N8	1683 aa		28.96	■■■□□ 2.23
CD44-222	ENST00000526025	NGDN	Q8NEJ9	315 aa	Known RBP	28.96	■■■□□ 2.23
CD44-222	ENST00000526025	BRD4	O60885	1362 aa	Predicted RBP	28.96	■■■□□ 2.23
CD44-222	ENST00000526025	CABP1	Q9NZU7	370 aa		28.95	■■■□□ 2.22
CD44-222	ENST00000526025	SBNO1	A3KN83	1393 aa		28.95	■■■□□ 2.22
CD44-222	ENST00000526025	MYOM1	P52179	1685 aa		28.95	■■■□□ 2.22
CD44-222	ENST00000526025	ACE	P12821	1306 aa		28.94	■■■□□ 2.22
CD44-222	ENST00000526025	DDX17	Q92841	729 aa	Known RBP	28.94	■■■□□ 2.22
CD44-222	ENST00000526025	MON2	Q7Z3U7	1717 aa		28.94	■■■□□ 2.22
CD44-222	ENST00000526025	PSME1	Q06323	249 aa		28.93	■■■□□ 2.22
CD44-222	ENST00000526025	LRRC59	Q96AG4	307 aa	Known RBP	28.93	■■■□□ 2.22
CD44-222	ENST00000526025	CPSF1	Q10570	1443 aa	Known RBP	28.93	■■■□□ 2.22
CD44-222	ENST00000526025	KRT28	Q7Z3Y7	464 aa		28.92	■■■□□ 2.22
CD44-222	ENST00000526025	JCAD	Q9P266	1359 aa		28.9	■■■□□ 2.22
CD44-222	ENST00000526025	ALS2	Q96Q42	1657 aa		28.9	■■■□□ 2.22
CD44-222	ENST00000526025	ZNF692	Q9BU19	519 aa	Predicted RBP	28.9	■■■□□ 2.22
CD44-222	ENST00000526025	COL22A1	Q8NFW1	1626 aa	Predicted RBP	28.9	■■■□□ 2.22
CD44-222	ENST00000526025	CD163L1	Q9NR16	1453 aa		28.9	■■■□□ 2.22
CD44-222	ENST00000526025	NRK	Q7Z2Y5	1582 aa		28.88	■■■□□ 2.21
CD44-222	ENST00000526025	USP6	P35125	1406 aa		28.88	■■■□□ 2.21
CD44-222	ENST00000526025	TNS3	Q68CZ2	1445 aa		28.88	■■■□□ 2.21
CD44-222	ENST00000526025	SPATA31A3	Q5VYP0	1347 aa		28.87	■■■□□ 2.21
CD44-222	ENST00000526025	TMC1	Q8TDI8	760 aa		28.86	■■■□□ 2.21
CD44-222	ENST00000526025	TERF2IP	Q9NYB0	399 aa		28.86	■■■□□ 2.21
CD44-222	ENST00000526025	SSH2	Q76I76	1423 aa		28.86	■■■□□ 2.21
CD44-222	ENST00000526025	XPC	Q01831	940 aa	Predicted RBP	28.85	■■■□□ 2.21
CD44-222	ENST00000526025	SLC12A5	Q9H2X9	1139 aa		28.85	■■■□□ 2.21
CD44-222	ENST00000526025	ANKRD36B	Q8N2N9	1353 aa		28.85	■■■□□ 2.21

Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms