RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 CDC45O75419 566 aa15.5■□□□□ 0.07
USP53-209ENST00000514665 TRAK2O60296 914 aa15.49■□□□□ 0.07
USP53-209ENST00000514665 CABP1Q9NZU7 370 aa15.49■□□□□ 0.07
USP53-209ENST00000514665 VPS37CA5D8V6 355 aaPredicted RBP15.49■□□□□ 0.07
USP53-209ENST00000514665 NLRP6P59044 892 aa15.49■□□□□ 0.07
USP53-209ENST00000514665 TWISTNBQ3B726 338 aaPredicted RBP15.49■□□□□ 0.07
USP53-209ENST00000514665 RUFY2Q8WXA3 655 aa15.49■□□□□ 0.07
USP53-209ENST00000514665 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.49■□□□□ 0.07
USP53-209ENST00000514665 NUCB2P80303 420 aa15.49■□□□□ 0.07
USP53-209ENST00000514665 KIF3AQ9Y496 699 aa15.49■□□□□ 0.07
USP53-209ENST00000514665 HMGXB3Q12766 1538 aa15.49■□□□□ 0.07
USP53-209ENST00000514665 ROCK1Q13464 1354 aa15.48■□□□□ 0.07
USP53-209ENST00000514665 PSME1Q06323 249 aa15.48■□□□□ 0.07
USP53-209ENST00000514665 CREBRFQ8IUR6 639 aa15.48■□□□□ 0.07
USP53-209ENST00000514665 SLFN5Q08AF3 891 aa15.47■□□□□ 0.07
USP53-209ENST00000514665 TPM4P67936 248 aa15.47■□□□□ 0.07
USP53-209ENST00000514665 SUPT6HQ7KZ85 1726 aaKnown RBP15.46■□□□□ 0.07
USP53-209ENST00000514665 BICRAQ9NZM4 1560 aa15.46■□□□□ 0.07
USP53-209ENST00000514665 ATF7IPQ6VMQ6 1270 aa15.46■□□□□ 0.07
USP53-209ENST00000514665 TXNDC2Q86VQ3 553 aa15.46■□□□□ 0.07
USP53-209ENST00000514665 AIMP1Q12904 312 aaKnown RBP15.46■□□□□ 0.07
USP53-209ENST00000514665 WWC1Q8IX03 1113 aa15.46■□□□□ 0.07
USP53-209ENST00000514665 RNF214Q8ND24 703 aa15.46■□□□□ 0.07
USP53-209ENST00000514665 BECN2A8MW95 431 aa15.46■□□□□ 0.06
USP53-209ENST00000514665 TTC5Q8N0Z6 440 aa15.45■□□□□ 0.06
USP53-209ENST00000514665 G3BP1Q13283 466 aaKnown RBP eCLIP15.45■□□□□ 0.06
USP53-209ENST00000514665 ABCC5O15440 1437 aa15.45■□□□□ 0.06
USP53-209ENST00000514665 SNAPC4Q5SXM2 1469 aa15.45■□□□□ 0.06
USP53-209ENST00000514665 UBTFL1P0CB47 393 aaPredicted RBP15.45■□□□□ 0.06
USP53-209ENST00000514665 NEK4P51957 841 aa15.45■□□□□ 0.06
USP53-209ENST00000514665 SULT6B1Q6IMI4 303 aa15.45■□□□□ 0.06
USP53-209ENST00000514665 GOLGA6L19H0YKK7 550 aa15.44■□□□□ 0.06
USP53-209ENST00000514665 RAPGEF3O95398 923 aa15.44■□□□□ 0.06
USP53-209ENST00000514665 SMC3Q9UQE7 1217 aa15.44■□□□□ 0.06
USP53-209ENST00000514665 MVPQ14764 893 aaKnown RBP15.44■□□□□ 0.06
USP53-209ENST00000514665 HECW1Q76N89 1606 aa15.44■□□□□ 0.06
USP53-209ENST00000514665 SURF6O75683 361 aaKnown RBP15.44■□□□□ 0.06
USP53-209ENST00000514665 WDR63Q8IWG1 891 aa15.44■□□□□ 0.06
USP53-209ENST00000514665 GTF2E1P29083 439 aaPredicted RBP15.44■□□□□ 0.06
USP53-209ENST00000514665 CDK19Q9BWU1 502 aa15.44■□□□□ 0.06
USP53-209ENST00000514665 RASSF8Q8NHQ8 419 aa15.43■□□□□ 0.06
USP53-209ENST00000514665 MRE11P49959 708 aa15.43■□□□□ 0.06
USP53-209ENST00000514665 ABCA10Q8WWZ4 1543 aa15.43■□□□□ 0.06
USP53-209ENST00000514665 FAM43AQ8N2R8 423 aa15.42■□□□□ 0.06
USP53-209ENST00000514665 BICD2Q8TD16 824 aa15.42■□□□□ 0.06
USP53-209ENST00000514665 CC2D2AQ9P2K1 1620 aa15.42■□□□□ 0.06
USP53-209ENST00000514665 ARHGEF11O15085 1522 aa15.42■□□□□ 0.06
USP53-209ENST00000514665 DDX58O95786 925 aaKnown RBP15.42■□□□□ 0.06
USP53-209ENST00000514665 CAVIN1Q6NZI2 390 aaKnown RBP15.42■□□□□ 0.06
USP53-209ENST00000514665 CCDC34Q96HJ3 373 aa15.42■□□□□ 0.06
USP53-209ENST00000514665 DNMBPQ6XZF7 1577 aa15.42■□□□□ 0.06
USP53-209ENST00000514665 NCOA1Q15788 1441 aa15.41■□□□□ 0.06
USP53-209ENST00000514665 SLC4A2P04920 1241 aa15.41■□□□□ 0.06
USP53-209ENST00000514665 THUMPD2Q9BTF0 503 aaKnown RBP15.41■□□□□ 0.06
USP53-209ENST00000514665 FAM13BQ9NYF5 915 aa15.41■□□□□ 0.06
USP53-209ENST00000514665 MRC2Q9UBG0 1479 aa15.41■□□□□ 0.06
USP53-209ENST00000514665 FOSBP53539 338 aa15.41■□□□□ 0.06
USP53-209ENST00000514665 NASPP49321 788 aaPredicted RBP15.41■□□□□ 0.06
USP53-209ENST00000514665 VSIG10Q8N0Z9 540 aa15.41■□□□□ 0.06
USP53-209ENST00000514665 ZNF428Q96B54 188 aa15.41■□□□□ 0.06
USP53-209ENST00000514665 PLB1Q6P1J6 1458 aa15.4■□□□□ 0.06
USP53-209ENST00000514665 IFT140Q96RY7 1462 aa15.4■□□□□ 0.06
USP53-209ENST00000514665 KIAA0586Q9BVV6 1533 aa15.4■□□□□ 0.06
USP53-209ENST00000514665 GCC1Q96CN9 775 aa15.39■□□□□ 0.05
USP53-209ENST00000514665 GNAI3P08754 354 aa15.39■□□□□ 0.05
USP53-209ENST00000514665 RNF20Q5VTR2 975 aa15.39■□□□□ 0.05
USP53-209ENST00000514665 PRPF40AO75400 957 aaKnown RBP15.38■□□□□ 0.05
USP53-209ENST00000514665 APPP05067 770 aa15.38■□□□□ 0.05
USP53-209ENST00000514665 RRS1Q15050 365 aaKnown RBP15.38■□□□□ 0.05
USP53-209ENST00000514665 HSP90AB4PQ58FF6 505 aa15.38■□□□□ 0.05
USP53-209ENST00000514665 ZNF592Q92610 1267 aa15.38■□□□□ 0.05
USP53-209ENST00000514665 TMPOP42166 694 aaKnown RBP15.38■□□□□ 0.05
USP53-209ENST00000514665 NLRP2Q9NX02 1062 aa15.38■□□□□ 0.05
USP53-209ENST00000514665 RIC3Q7Z5B4 369 aa15.38■□□□□ 0.05
USP53-209ENST00000514665 TMEM57Q8N5G2 664 aa15.38■□□□□ 0.05
USP53-209ENST00000514665 PTPN23Q9H3S7 1636 aa15.38■□□□□ 0.05
USP53-209ENST00000514665 ERC2O15083 957 aa15.38■□□□□ 0.05
USP53-209ENST00000514665 CLASRPQ8N2M8 674 aaKnown RBP15.38■□□□□ 0.05
USP53-209ENST00000514665 FBXW7Q969H0 707 aa15.38■□□□□ 0.05
USP53-209ENST00000514665 NEUROD6Q96NK8 337 aa15.38■□□□□ 0.05
USP53-209ENST00000514665 NSD3Q9BZ95 1437 aa15.37■□□□□ 0.05
USP53-209ENST00000514665 CPLX1O14810 134 aa15.37■□□□□ 0.05
USP53-209ENST00000514665 CLSTN1O94985 981 aa15.37■□□□□ 0.05
USP53-209ENST00000514665 ABTB2Q8N961 1025 aa15.37■□□□□ 0.05
USP53-209ENST00000514665 RAPGEF4Q8WZA2 1011 aa15.37■□□□□ 0.05
USP53-209ENST00000514665 MAP3K1Q13233 1512 aa15.37■□□□□ 0.05
USP53-209ENST00000514665 CCDC27Q2M243 656 aa15.37■□□□□ 0.05
USP53-209ENST00000514665 CHD1LQ86WJ1 897 aa15.37■□□□□ 0.05
USP53-209ENST00000514665 PTPRKQ15262 1439 aa15.36■□□□□ 0.05
USP53-209ENST00000514665 EVA1CP58658 441 aa15.36■□□□□ 0.05
USP53-209ENST00000514665 RABEP1Q15276 862 aa15.36■□□□□ 0.05
USP53-209ENST00000514665 CCDC30Q5VVM6 783 aa15.36■□□□□ 0.05
USP53-209ENST00000514665 CPLX2Q6PUV4 134 aaKnown RBP15.36■□□□□ 0.05
USP53-209ENST00000514665 SLC52A1Q9NWF4 448 aa15.36■□□□□ 0.05
USP53-209ENST00000514665 RPRD2Q5VT52 1461 aaKnown RBP15.36■□□□□ 0.05
USP53-209ENST00000514665 PES1O00541 588 aaKnown RBP15.35■□□□□ 0.05
USP53-209ENST00000514665 RARSP54136 660 aaKnown RBP15.35■□□□□ 0.05
USP53-209ENST00000514665 SSH1Q8WYL5 1049 aa15.35■□□□□ 0.05
USP53-209ENST00000514665 PLEKHH2Q8IVE3 1493 aa15.35■□□□□ 0.05
USP53-209ENST00000514665 CAMSAP2Q08AD1 1489 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms