RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 SCAF11Q99590 1463 aaKnown RBP11.7□□□□□ -0.54
LIMCH1-209ENST00000509277 YTHDC2Q9H6S0 1430 aaKnown RBP11.69□□□□□ -0.54
LIMCH1-209ENST00000509277 EVC2Q86UK5 1308 aa11.69□□□□□ -0.54
LIMCH1-209ENST00000509277 ZBTB7CA1YPR0 619 aa11.69□□□□□ -0.54
LIMCH1-209ENST00000509277 KNSTRNQ9Y448 316 aa11.68□□□□□ -0.54
LIMCH1-209ENST00000509277 CDCA8Q53HL2 280 aa11.68□□□□□ -0.54
LIMCH1-209ENST00000509277 ADAMTSL3P82987 1691 aa11.68□□□□□ -0.54
LIMCH1-209ENST00000509277 CEP170BQ9Y4F5 1589 aaPredicted RBP11.67□□□□□ -0.54
LIMCH1-209ENST00000509277 PAK3O75914 559 aaPredicted RBP11.67□□□□□ -0.54
LIMCH1-209ENST00000509277 XPCQ01831 940 aaPredicted RBP11.67□□□□□ -0.54
LIMCH1-209ENST00000509277 TRPM1Q7Z4N2 1603 aa11.67□□□□□ -0.54
LIMCH1-209ENST00000509277 CABP1Q9NZU7 370 aa11.67□□□□□ -0.54
LIMCH1-209ENST00000509277 PPM1GO15355 546 aaPredicted RBP11.66□□□□□ -0.54
LIMCH1-209ENST00000509277 SLC24A1O60721 1099 aa11.66□□□□□ -0.54
LIMCH1-209ENST00000509277 MYOM2P54296 1465 aa11.66□□□□□ -0.54
LIMCH1-209ENST00000509277 FAM9BQ8IZU0 186 aa11.66□□□□□ -0.54
LIMCH1-209ENST00000509277 PPLO60437 1756 aa11.66□□□□□ -0.54
LIMCH1-209ENST00000509277 NUTM2GQ5VZR2 741 aa11.66□□□□□ -0.54
LIMCH1-209ENST00000509277 MYO3AQ8NEV4 1616 aa11.65□□□□□ -0.54
LIMCH1-209ENST00000509277 ZFYVE9O95405 1425 aa11.65□□□□□ -0.54
LIMCH1-209ENST00000509277 NGDNQ8NEJ9 315 aaKnown RBP11.65□□□□□ -0.55
LIMCH1-209ENST00000509277 TBX22Q9Y458 520 aa11.65□□□□□ -0.55
LIMCH1-209ENST00000509277 ALKQ9UM73 1620 aa11.64□□□□□ -0.55
LIMCH1-209ENST00000509277 UBR1Q8IWV7 1749 aa11.64□□□□□ -0.55
LIMCH1-209ENST00000509277 ROBO2Q9HCK4 1378 aa11.64□□□□□ -0.55
LIMCH1-209ENST00000509277 PLEKHG1Q9ULL1 1385 aa11.64□□□□□ -0.55
LIMCH1-209ENST00000509277 ZNF335Q9H4Z2 1342 aaPredicted RBP11.64□□□□□ -0.55
LIMCH1-209ENST00000509277 NPHP4O75161 1426 aaPredicted RBP11.63□□□□□ -0.55
LIMCH1-209ENST00000509277 HNRNPUQ00839 825 aaKnown RBP eCLIP11.63□□□□□ -0.55
LIMCH1-209ENST00000509277 GPRASP1Q5JY77 1395 aa11.63□□□□□ -0.55
LIMCH1-209ENST00000509277 ESCO1Q5FWF5 840 aa11.63□□□□□ -0.55
LIMCH1-209ENST00000509277 MRS2Q9HD23 443 aa11.63□□□□□ -0.55
LIMCH1-209ENST00000509277 B4GALNT3Q6L9W6 998 aa11.62□□□□□ -0.55
LIMCH1-209ENST00000509277 NUDT16Q96DE0 195 aaKnown RBP11.62□□□□□ -0.55
LIMCH1-209ENST00000509277 GGNBP2Q9H3C7 697 aa11.62□□□□□ -0.55
LIMCH1-209ENST00000509277 LRPPRCP42704 1394 aaKnown RBP11.61□□□□□ -0.55
LIMCH1-209ENST00000509277 ADAMTS13Q76LX8 1427 aa11.61□□□□□ -0.55
LIMCH1-209ENST00000509277 WASLO00401 505 aaPredicted RBP11.61□□□□□ -0.55
LIMCH1-209ENST00000509277 LAS1LQ9Y4W2 734 aaKnown RBP11.61□□□□□ -0.55
LIMCH1-209ENST00000509277 FBLN1P23142 703 aa11.6□□□□□ -0.55
LIMCH1-209ENST00000509277 HDGFL2Q7Z4V5 671 aaPredicted RBP11.6□□□□□ -0.55
LIMCH1-209ENST00000509277 ATF3P18847 181 aa11.6□□□□□ -0.55
LIMCH1-209ENST00000509277 DDX17Q92841 729 aaKnown RBP11.59□□□□□ -0.55
LIMCH1-209ENST00000509277 IQGAP1P46940 1657 aa11.59□□□□□ -0.55
LIMCH1-209ENST00000509277 CCDC184Q52MB2 194 aa11.59□□□□□ -0.55
LIMCH1-209ENST00000509277 PTPRUQ92729 1446 aa11.59□□□□□ -0.55
LIMCH1-209ENST00000509277 FOXO3O43524 673 aa11.58□□□□□ -0.56
LIMCH1-209ENST00000509277 ARXQ96QS3 562 aa11.58□□□□□ -0.56
LIMCH1-209ENST00000509277 PIP4K2BP78356 416 aa11.58□□□□□ -0.56
LIMCH1-209ENST00000509277 MORC1Q86VD1 984 aa11.58□□□□□ -0.56
LIMCH1-209ENST00000509277 TERF2IPQ9NYB0 399 aa11.58□□□□□ -0.56
LIMCH1-209ENST00000509277 IFT172Q9UG01 1749 aa11.57□□□□□ -0.56
LIMCH1-209ENST00000509277 ASXL1Q8IXJ9 1541 aa11.57□□□□□ -0.56
LIMCH1-209ENST00000509277 ORAI2Q96SN7 254 aa11.56□□□□□ -0.56
LIMCH1-209ENST00000509277 PRKRIP1Q9H875 184 aaPredicted RBP11.56□□□□□ -0.56
LIMCH1-209ENST00000509277 ZRANB1Q9UGI0 708 aa11.56□□□□□ -0.56
LIMCH1-209ENST00000509277 ABCC11Q96J66 1382 aa11.56□□□□□ -0.56
LIMCH1-209ENST00000509277 NRXN1Q9ULB1 1477 aa11.56□□□□□ -0.56
LIMCH1-209ENST00000509277 ADGRB1O14514 1584 aa11.56□□□□□ -0.56
LIMCH1-209ENST00000509277 CCDC61Q9Y6R9 512 aa11.56□□□□□ -0.56
LIMCH1-209ENST00000509277 PSME1Q06323 249 aa11.55□□□□□ -0.56
LIMCH1-209ENST00000509277 CARD14Q9BXL6 1004 aa11.55□□□□□ -0.56
LIMCH1-209ENST00000509277 KTN1Q86UP2 1357 aaKnown RBP11.54□□□□□ -0.56
LIMCH1-209ENST00000509277 TMEM94Q12767 1356 aa11.54□□□□□ -0.56
LIMCH1-209ENST00000509277 NME9Q86XW9 330 aa11.54□□□□□ -0.56
LIMCH1-209ENST00000509277 NSD3Q9BZ95 1437 aa11.54□□□□□ -0.56
LIMCH1-209ENST00000509277 NOP58Q9Y2X3 529 aaKnown RBP11.54□□□□□ -0.56
LIMCH1-209ENST00000509277 PRR36Q9H6K5 1346 aa11.53□□□□□ -0.56
LIMCH1-209ENST00000509277 ARHGAP23Q9P227 1491 aa11.53□□□□□ -0.56
LIMCH1-209ENST00000509277 SLIT1O75093 1534 aa11.53□□□□□ -0.56
LIMCH1-209ENST00000509277 ACEP12821 1306 aa11.53□□□□□ -0.56
LIMCH1-209ENST00000509277 HAP1P54257 671 aaPredicted RBP11.53□□□□□ -0.56
LIMCH1-209ENST00000509277 LMTK3Q96Q04 1460 aa11.53□□□□□ -0.56
LIMCH1-209ENST00000509277 QRICH2Q9H0J4 1663 aa11.52□□□□□ -0.56
LIMCH1-209ENST00000509277 PPIP5K1Q6PFW1 1433 aa11.52□□□□□ -0.57
LIMCH1-209ENST00000509277 PHF8Q9UPP1 1060 aa11.51□□□□□ -0.57
LIMCH1-209ENST00000509277 DMRT2Q9Y5R5 561 aa11.51□□□□□ -0.57
LIMCH1-209ENST00000509277 ATAD2Q6PL18 1390 aa11.51□□□□□ -0.57
LIMCH1-209ENST00000509277 CGNL1Q0VF96 1302 aa11.51□□□□□ -0.57
LIMCH1-209ENST00000509277 ANP32AP39687 249 aaKnown RBP11.51□□□□□ -0.57
LIMCH1-209ENST00000509277 LTV1Q96GA3 475 aaPredicted RBP11.51□□□□□ -0.57
LIMCH1-209ENST00000509277 ZBTB47Q9UFB7 747 aaPredicted RBP11.51□□□□□ -0.57
LIMCH1-209ENST00000509277 NLRP6P59044 892 aa11.5□□□□□ -0.57
LIMCH1-209ENST00000509277 ABTB2Q8N961 1025 aa11.5□□□□□ -0.57
LIMCH1-209ENST00000509277 U2SURPO15042 1029 aaKnown RBP11.5□□□□□ -0.57
LIMCH1-209ENST00000509277 NRXN3Q9Y4C0 1643 aa11.5□□□□□ -0.57
LIMCH1-209ENST00000509277 A0A1W2PP64 1363 aa11.5□□□□□ -0.57
LIMCH1-209ENST00000509277 C19orf44Q9H6X5 657 aa11.5□□□□□ -0.57
LIMCH1-209ENST00000509277 SETBP1Q9Y6X0 1596 aa11.49□□□□□ -0.57
LIMCH1-209ENST00000509277 NEURL4Q96JN8 1562 aa11.49□□□□□ -0.57
LIMCH1-209ENST00000509277 RRS1Q15050 365 aaKnown RBP11.49□□□□□ -0.57
LIMCH1-209ENST00000509277 NEUROD2Q15784 382 aa11.49□□□□□ -0.57
LIMCH1-209ENST00000509277 ARHGEF28Q8N1W1 1705 aaKnown RBP11.48□□□□□ -0.57
LIMCH1-209ENST00000509277 TULP4Q9NRJ4 1543 aa11.48□□□□□ -0.57
LIMCH1-209ENST00000509277 LAMC1P11047 1609 aa11.48□□□□□ -0.57
LIMCH1-209ENST00000509277 PER1O15534 1290 aaPredicted RBP11.48□□□□□ -0.57
LIMCH1-209ENST00000509277 WDR43Q15061 677 aaKnown RBP eCLIP11.48□□□□□ -0.57
LIMCH1-209ENST00000509277 COG3Q96JB2 828 aa11.48□□□□□ -0.57
LIMCH1-209ENST00000509277 MSH6P52701 1360 aa11.48□□□□□ -0.57
LIMCH1-209ENST00000509277 KIAA1210Q9ULL0 1709 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms