RNA–Protein interactions for RNA: ENST00000502802.1

HMGB1P3-201, Transcript of high mobility group box 1 pseudogene 3, humanhuman

BASIC

Gene HMGB1P3, Length 616 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P3-201ENST00000502802 KCTD17Q8N5Z5 321 aa9.45□□□□□ -0.9
HMGB1P3-201ENST00000502802 ERBB3P21860 1342 aa9.45□□□□□ -0.9
HMGB1P3-201ENST00000502802 ACIN1Q9UKV3 1341 aaKnown RBP9.45□□□□□ -0.9
HMGB1P3-201ENST00000502802 CFAP99D6REC4 459 aa9.44□□□□□ -0.9
HMGB1P3-201ENST00000502802 DMRTA1Q5VZB9 504 aa9.44□□□□□ -0.9
HMGB1P3-201ENST00000502802 POTEEQ6S8J3 1075 aa9.44□□□□□ -0.9
HMGB1P3-201ENST00000502802 LRRN4Q8WUT4 740 aa9.44□□□□□ -0.9
HMGB1P3-201ENST00000502802 CFHP08603 1231 aa9.43□□□□□ -0.9
HMGB1P3-201ENST00000502802 ATP6V1AP38606 617 aa9.43□□□□□ -0.9
HMGB1P3-201ENST00000502802 VARS2Q5ST30 1063 aaKnown RBP9.43□□□□□ -0.9
HMGB1P3-201ENST00000502802 SAMD7Q7Z3H4 446 aa9.43□□□□□ -0.9
HMGB1P3-201ENST00000502802 GPR37L1O60883 481 aa9.42□□□□□ -0.9
HMGB1P3-201ENST00000502802 LAPTM4BQ86VI4 370 aa9.42□□□□□ -0.9
HMGB1P3-201ENST00000502802 ADAMTS19Q8TE59 1207 aa9.42□□□□□ -0.9
HMGB1P3-201ENST00000502802 VPS9D1Q9Y2B5 631 aa9.42□□□□□ -0.9
HMGB1P3-201ENST00000502802 AXIN2Q9Y2T1 843 aa9.42□□□□□ -0.9
HMGB1P3-201ENST00000502802 PBX2P40425 430 aa9.41□□□□□ -0.9
HMGB1P3-201ENST00000502802 PDE4CQ08493 712 aa9.41□□□□□ -0.9
HMGB1P3-201ENST00000502802 CCDC9Q9Y3X0 531 aaKnown RBP9.41□□□□□ -0.9
HMGB1P3-201ENST00000502802 VAC14Q08AM6 782 aa9.4□□□□□ -0.9
HMGB1P3-201ENST00000502802 AEBP1Q8IUX7 1158 aa9.4□□□□□ -0.9
HMGB1P3-201ENST00000502802 NBPF3Q9H094 633 aa9.4□□□□□ -0.9
HMGB1P3-201ENST00000502802 RNF40O75150 1001 aa9.39□□□□□ -0.91
HMGB1P3-201ENST00000502802 KMT5BQ4FZB7 885 aa9.39□□□□□ -0.91
HMGB1P3-201ENST00000502802 PRR7Q8TB68 274 aa9.39□□□□□ -0.91
HMGB1P3-201ENST00000502802 SYMPKQ92797 1274 aaKnown RBP9.39□□□□□ -0.91
HMGB1P3-201ENST00000502802 RANGAP1P46060 587 aaPredicted RBP9.38□□□□□ -0.91
HMGB1P3-201ENST00000502802 EPS8L1Q8TE68 723 aa9.38□□□□□ -0.91
HMGB1P3-201ENST00000502802 PBXIP1Q96AQ6 731 aa9.38□□□□□ -0.91
HMGB1P3-201ENST00000502802 OTUD5Q96G74 571 aa9.38□□□□□ -0.91
HMGB1P3-201ENST00000502802 ALG2Q9H553 416 aa9.37□□□□□ -0.91
HMGB1P3-201ENST00000502802 BHMG1C9JSJ3 638 aaPredicted RBP9.36□□□□□ -0.91
HMGB1P3-201ENST00000502802 RFX1P22670 979 aa9.36□□□□□ -0.91
HMGB1P3-201ENST00000502802 SOX11P35716 441 aa9.36□□□□□ -0.91
HMGB1P3-201ENST00000502802 NR6A1Q15406 480 aa9.36□□□□□ -0.91
HMGB1P3-201ENST00000502802 CFAP70Q5T0N1 1121 aa9.36□□□□□ -0.91
HMGB1P3-201ENST00000502802 RETREG3Q86VR2 466 aa9.36□□□□□ -0.91
HMGB1P3-201ENST00000502802 ZNF687Q8N1G0 1237 aa9.36□□□□□ -0.91
HMGB1P3-201ENST00000502802 ZFRQ96KR1 1074 aaKnown RBP9.36□□□□□ -0.91
HMGB1P3-201ENST00000502802 PPP1R12CQ9BZL4 782 aa9.36□□□□□ -0.91
HMGB1P3-201ENST00000502802 MORN1Q5T089 497 aa9.35□□□□□ -0.91
HMGB1P3-201ENST00000502802 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.34□□□□□ -0.91
HMGB1P3-201ENST00000502802 PER1O15534 1290 aaPredicted RBP9.34□□□□□ -0.91
HMGB1P3-201ENST00000502802 ACTN4O43707 911 aaKnown RBP9.34□□□□□ -0.91
HMGB1P3-201ENST00000502802 Q3C1V9 767 aa9.34□□□□□ -0.91
HMGB1P3-201ENST00000502802 DESI1Q6ICB0 168 aa9.34□□□□□ -0.91
HMGB1P3-201ENST00000502802 NPM2Q86SE8 214 aaKnown RBP9.34□□□□□ -0.91
HMGB1P3-201ENST00000502802 PNMA1Q8ND90 353 aa9.33□□□□□ -0.92
HMGB1P3-201ENST00000502802 SLC27A5Q9Y2P5 690 aa9.33□□□□□ -0.92
HMGB1P3-201ENST00000502802 PALM3A6NDB9 673 aaPredicted RBP9.32□□□□□ -0.92
HMGB1P3-201ENST00000502802 TK2O00142 265 aa9.32□□□□□ -0.92
HMGB1P3-201ENST00000502802 EMP3P54852 163 aa9.32□□□□□ -0.92
HMGB1P3-201ENST00000502802 SRPK2P78362 688 aaKnown RBP9.32□□□□□ -0.92
HMGB1P3-201ENST00000502802 PUS10Q3MIT2 529 aaKnown RBP9.32□□□□□ -0.92
HMGB1P3-201ENST00000502802 MRPL50Q8N5N7 158 aaKnown RBP9.32□□□□□ -0.92
HMGB1P3-201ENST00000502802 LRCH3Q96II8 777 aa9.32□□□□□ -0.92
HMGB1P3-201ENST00000502802 SEMA3FQ13275 785 aa9.31□□□□□ -0.92
HMGB1P3-201ENST00000502802 PRR14Q9BWN1 585 aa9.31□□□□□ -0.92
HMGB1P3-201ENST00000502802 ST18O60284 1047 aa9.3□□□□□ -0.92
HMGB1P3-201ENST00000502802 CSB-PGBD3P0DP91 1061 aa9.3□□□□□ -0.92
HMGB1P3-201ENST00000502802 LMOD1P29536 600 aaPredicted RBP9.3□□□□□ -0.92
HMGB1P3-201ENST00000502802 LYPD8Q6UX82 237 aa9.3□□□□□ -0.92
HMGB1P3-201ENST00000502802 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.3□□□□□ -0.92
HMGB1P3-201ENST00000502802 TFIP11Q9UBB9 837 aaKnown RBP9.3□□□□□ -0.92
HMGB1P3-201ENST00000502802 USTQ9Y2C2 406 aa9.3□□□□□ -0.92
HMGB1P3-201ENST00000502802 EIF4G2P78344 907 aaKnown RBP eCLIP9.29□□□□□ -0.92
HMGB1P3-201ENST00000502802 UCN2Q96RP3 112 aa9.29□□□□□ -0.92
HMGB1P3-201ENST00000502802 FAM205CA6NFA0 338 aa9.28□□□□□ -0.92
HMGB1P3-201ENST00000502802 PATL2C9JE40 543 aaKnown RBP9.28□□□□□ -0.92
HMGB1P3-201ENST00000502802 MARVELD3Q96A59 401 aa9.28□□□□□ -0.92
HMGB1P3-201ENST00000502802 USB1Q9BQ65 265 aaKnown RBP9.27□□□□□ -0.93
HMGB1P3-201ENST00000502802 NR1H3Q13133 447 aa9.26□□□□□ -0.93
HMGB1P3-201ENST00000502802 BLOC1S3Q6QNY0 202 aa9.26□□□□□ -0.93
HMGB1P3-201ENST00000502802 RNF19BQ6ZMZ0 732 aa9.26□□□□□ -0.93
HMGB1P3-201ENST00000502802 GZF1Q9H116 711 aaPredicted RBP9.26□□□□□ -0.93
HMGB1P3-201ENST00000502802 SALL2Q9Y467 1007 aaPredicted RBP9.26□□□□□ -0.93
HMGB1P3-201ENST00000502802 BRD1O95696 1058 aa9.25□□□□□ -0.93
HMGB1P3-201ENST00000502802 ADGRD1Q6QNK2 874 aa9.25□□□□□ -0.93
HMGB1P3-201ENST00000502802 PPP4CP60510 307 aa9.24□□□□□ -0.93
HMGB1P3-201ENST00000502802 TMCO4Q5TGY1 634 aa9.24□□□□□ -0.93
HMGB1P3-201ENST00000502802 BRICD5Q6PL45 260 aa9.24□□□□□ -0.93
HMGB1P3-201ENST00000502802 MAFBQ9Y5Q3 323 aaPredicted RBP9.24□□□□□ -0.93
HMGB1P3-201ENST00000502802 ATG7O95352 703 aa9.23□□□□□ -0.93
HMGB1P3-201ENST00000502802 FMNL1O95466 1100 aaPredicted RBP9.23□□□□□ -0.93
HMGB1P3-201ENST00000502802 KCNA1Q09470 495 aa9.23□□□□□ -0.93
HMGB1P3-201ENST00000502802 TBC1D9Q6ZT07 1266 aa9.23□□□□□ -0.93
HMGB1P3-201ENST00000502802 SCUBE3Q8IX30 993 aa9.23□□□□□ -0.93
HMGB1P3-201ENST00000502802 ANKK1Q8NFD2 765 aa9.23□□□□□ -0.93
HMGB1P3-201ENST00000502802 FKBPLQ9UIM3 349 aa9.23□□□□□ -0.93
HMGB1P3-201ENST00000502802 GOLGA8CPA6NN73 597 aa9.22□□□□□ -0.93
HMGB1P3-201ENST00000502802 ZBBXA8MT70 800 aa9.22□□□□□ -0.93
HMGB1P3-201ENST00000502802 HRO43593 1189 aa9.22□□□□□ -0.93
HMGB1P3-201ENST00000502802 ATP9BO43861 1147 aa9.22□□□□□ -0.93
HMGB1P3-201ENST00000502802 LSM11P83369 360 aaKnown RBP eCLIP9.22□□□□□ -0.93
HMGB1P3-201ENST00000502802 CDCA8Q53HL2 280 aa9.22□□□□□ -0.93
HMGB1P3-201ENST00000502802 HS3ST6Q96QI5 342 aa9.22□□□□□ -0.93
HMGB1P3-201ENST00000502802 SOWAHBA6NEL2 793 aa9.21□□□□□ -0.94
HMGB1P3-201ENST00000502802 NR1I2O75469 434 aa9.21□□□□□ -0.94
HMGB1P3-201ENST00000502802 F12P00748 615 aaPredicted RBP9.21□□□□□ -0.94
HMGB1P3-201ENST00000502802 FBXO45P0C2W1 286 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms