RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 ATAD2BQ9ULI0 1458 aa8.01□□□□□ -1.13
USP54-217ENST00000498213 DDX11L8A8MPP1 907 aa8.01□□□□□ -1.13
USP54-217ENST00000498213 GDF9O60383 454 aa8.01□□□□□ -1.13
USP54-217ENST00000498213 PUS10Q3MIT2 529 aaKnown RBP8.01□□□□□ -1.13
USP54-217ENST00000498213 CCDC102AQ96A19 550 aa8.01□□□□□ -1.13
USP54-217ENST00000498213 DCAF1Q9Y4B6 1507 aa8.01□□□□□ -1.13
USP54-217ENST00000498213 MRC2Q9UBG0 1479 aa8□□□□□ -1.13
USP54-217ENST00000498213 PLA2G2CQ5R387 149 aa8□□□□□ -1.13
USP54-217ENST00000498213 SPSB2Q99619 263 aa8□□□□□ -1.13
USP54-217ENST00000498213 ZC3H15Q8WU90 426 aaKnown RBP7.99□□□□□ -1.13
USP54-217ENST00000498213 LAMC3Q9Y6N6 1575 aa7.98□□□□□ -1.13
USP54-217ENST00000498213 PHOX2BQ99453 314 aa7.98□□□□□ -1.13
USP54-217ENST00000498213 ARAP1Q96P48 1450 aa7.98□□□□□ -1.13
USP54-217ENST00000498213 POTECB2RU33 542 aa7.97□□□□□ -1.13
USP54-217ENST00000498213 MDM2Q00987 491 aaPredicted RBP7.97□□□□□ -1.13
USP54-217ENST00000498213 ZCCHC6Q5VYS8 1495 aaKnown RBP7.97□□□□□ -1.13
USP54-217ENST00000498213 ZMYND10O75800 440 aa7.96□□□□□ -1.14
USP54-217ENST00000498213 FOXC1Q12948 553 aa7.96□□□□□ -1.14
USP54-217ENST00000498213 WDR62O43379 1518 aa7.95□□□□□ -1.14
USP54-217ENST00000498213 CLCN1P35523 988 aa7.95□□□□□ -1.14
USP54-217ENST00000498213 BARGINQ6ZT62 677 aa7.95□□□□□ -1.14
USP54-217ENST00000498213 ST8SIA5O15466 376 aa7.94□□□□□ -1.14
USP54-217ENST00000498213 MORN1Q5T089 497 aa7.94□□□□□ -1.14
USP54-217ENST00000498213 GPCPD1Q9NPB8 672 aa7.94□□□□□ -1.14
USP54-217ENST00000498213 PKD2L1Q9P0L9 805 aa7.94□□□□□ -1.14
USP54-217ENST00000498213 FUT2Q10981 343 aa7.93□□□□□ -1.14
USP54-217ENST00000498213 TTLL12Q14166 644 aaPredicted RBP7.93□□□□□ -1.14
USP54-217ENST00000498213 AAASQ9NRG9 546 aa7.93□□□□□ -1.14
USP54-217ENST00000498213 RPIAP49247 311 aa7.92□□□□□ -1.14
USP54-217ENST00000498213 GRIPAP1Q4V328 841 aa7.92□□□□□ -1.14
USP54-217ENST00000498213 FCF1Q9Y324 198 aaKnown RBP7.92□□□□□ -1.14
USP54-217ENST00000498213 HMGXB3Q12766 1538 aa7.92□□□□□ -1.14
USP54-217ENST00000498213 CD2BP2O95400 341 aaKnown RBP7.91□□□□□ -1.14
USP54-217ENST00000498213 FMNL1O95466 1100 aaPredicted RBP7.91□□□□□ -1.14
USP54-217ENST00000498213 ATP6V1AP38606 617 aa7.91□□□□□ -1.14
USP54-217ENST00000498213 GCGRP47871 477 aa7.91□□□□□ -1.14
USP54-217ENST00000498213 THAP11Q96EK4 314 aa7.91□□□□□ -1.14
USP54-217ENST00000498213 BAZ1BQ9UIG0 1483 aaKnown RBP7.9□□□□□ -1.14
USP54-217ENST00000498213 SLC27A5Q9Y2P5 690 aa7.9□□□□□ -1.14
USP54-217ENST00000498213 CD46P15529 392 aa7.89□□□□□ -1.15
USP54-217ENST00000498213 CYP4X1Q8N118 509 aa7.89□□□□□ -1.15
USP54-217ENST00000498213 FAM160A2Q8N612 972 aaPredicted RBP7.89□□□□□ -1.15
USP54-217ENST00000498213 AK7Q96M32 723 aa7.88□□□□□ -1.15
USP54-217ENST00000498213 TOR4AQ9NXH8 423 aa7.88□□□□□ -1.15
USP54-217ENST00000498213 CADPSQ9ULU8 1353 aa7.87□□□□□ -1.15
USP54-217ENST00000498213 KDM4AO75164 1064 aa7.87□□□□□ -1.15
USP54-217ENST00000498213 NUTM1Q86Y26 1132 aa7.87□□□□□ -1.15
USP54-217ENST00000498213 CRIPAKQ8N1N5 446 aa7.87□□□□□ -1.15
USP54-217ENST00000498213 PRDM9Q9NQV7 894 aa7.87□□□□□ -1.15
USP54-217ENST00000498213 FAM217BQ9NTX9 383 aaPredicted RBP7.87□□□□□ -1.15
USP54-217ENST00000498213 ZBTB24O43167 697 aaPredicted RBP7.86□□□□□ -1.15
USP54-217ENST00000498213 AMHR2Q16671 573 aa7.86□□□□□ -1.15
USP54-217ENST00000498213 BRICD5Q6PL45 260 aa7.86□□□□□ -1.15
USP54-217ENST00000498213 SALL2Q9Y467 1007 aaPredicted RBP7.86□□□□□ -1.15
USP54-217ENST00000498213 AXIN1O15169 862 aa7.85□□□□□ -1.15
USP54-217ENST00000498213 AVPP01185 164 aa7.85□□□□□ -1.15
USP54-217ENST00000498213 USP46P62068 366 aa7.85□□□□□ -1.15
USP54-217ENST00000498213 TREML4Q6UXN2 200 aa7.85□□□□□ -1.15
USP54-217ENST00000498213 DACH1Q9UI36 760 aa7.85□□□□□ -1.15
USP54-217ENST00000498213 LMTK3Q96Q04 1460 aa7.85□□□□□ -1.15
USP54-217ENST00000498213 SSTR3P32745 418 aaPredicted RBP7.84□□□□□ -1.15
USP54-217ENST00000498213 MSS51Q4VC12 460 aa7.84□□□□□ -1.15
USP54-217ENST00000498213 GIGYF2Q6Y7W6 1299 aaKnown RBP7.84□□□□□ -1.15
USP54-217ENST00000498213 RNF19BQ6ZMZ0 732 aa7.84□□□□□ -1.15
USP54-217ENST00000498213 FBXO41Q8TF61 875 aa7.84□□□□□ -1.15
USP54-217ENST00000498213 SLC24A3Q9HC58 644 aa7.84□□□□□ -1.15
USP54-217ENST00000498213 CEP164Q9UPV0 1460 aa7.83□□□□□ -1.16
USP54-217ENST00000498213 TTC24A2A3L6 582 aaPredicted RBP7.83□□□□□ -1.16
USP54-217ENST00000498213 SOCS7O14512 581 aa7.83□□□□□ -1.16
USP54-217ENST00000498213 TRIM66O15016 1216 aa7.83□□□□□ -1.16
USP54-217ENST00000498213 CTC1Q2NKJ3 1217 aa7.83□□□□□ -1.16
USP54-217ENST00000498213 Q3C1V9 767 aa7.83□□□□□ -1.16
USP54-217ENST00000498213 ILDR2Q71H61 639 aa7.82□□□□□ -1.16
USP54-217ENST00000498213 GMPR2Q9P2T1 348 aaKnown RBP7.82□□□□□ -1.16
USP54-217ENST00000498213 ZNF608Q9ULD9 1512 aaPredicted RBP7.82□□□□□ -1.16
USP54-217ENST00000498213 C11orf95C9JLR9 678 aaPredicted RBP7.81□□□□□ -1.16
USP54-217ENST00000498213 PARP9Q8IXQ6 854 aa7.81□□□□□ -1.16
USP54-217ENST00000498213 REPIN1Q9BWE0 567 aaKnown RBP7.81□□□□□ -1.16
USP54-217ENST00000498213 HOXA2O43364 376 aa7.8□□□□□ -1.16
USP54-217ENST00000498213 SMCPP49901 116 aaPredicted RBP7.8□□□□□ -1.16
USP54-217ENST00000498213 LCE2AQ5TA79 106 aaPredicted RBP7.8□□□□□ -1.16
USP54-217ENST00000498213 WNT7AO00755 349 aa7.79□□□□□ -1.16
USP54-217ENST00000498213 PDE4DQ08499 809 aa7.79□□□□□ -1.16
USP54-217ENST00000498213 FANCD2Q9BXW9 1451 aa7.79□□□□□ -1.16
USP54-217ENST00000498213 RSF1Q96T23 1441 aaPredicted RBP7.78□□□□□ -1.16
USP54-217ENST00000498213 TRIM32Q13049 653 aa7.78□□□□□ -1.16
USP54-217ENST00000498213 SNIP1Q8TAD8 396 aaKnown RBP7.78□□□□□ -1.16
USP54-217ENST00000498213 BEGAINQ9BUH8 593 aa7.78□□□□□ -1.16
USP54-217ENST00000498213 SMARCA4P51532 1647 aa7.78□□□□□ -1.16
USP54-217ENST00000498213 WFS1O76024 890 aa7.77□□□□□ -1.17
USP54-217ENST00000498213 SMPD1P17405 629 aa7.77□□□□□ -1.17
USP54-217ENST00000498213 MMP16P51512 607 aa7.77□□□□□ -1.17
USP54-217ENST00000498213 HLA-CQ95604 372 aa7.77□□□□□ -1.17
USP54-217ENST00000498213 GUCA2AQ02747 115 aa7.76□□□□□ -1.17
USP54-217ENST00000498213 DIXDC1Q155Q3 683 aa7.76□□□□□ -1.17
USP54-217ENST00000498213 USB1Q9BQ65 265 aaKnown RBP7.76□□□□□ -1.17
USP54-217ENST00000498213 URB2Q14146 1524 aaKnown RBP7.76□□□□□ -1.17
USP54-217ENST00000498213 FDX1P10109 184 aa7.75□□□□□ -1.17
USP54-217ENST00000498213 SPIRE2Q8WWL2 714 aa7.75□□□□□ -1.17
USP54-217ENST00000498213 MRGPRX2Q96LB1 330 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms