RNA–Protein interactions for RNA: ENST00000497171.1

PHC3-216, Transcript of polyhomeotic homolog 3, humanhuman

TSL 2

Gene PHC3, Length 420 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHC3-216ENST00000497171 PRDM9Q9NQV7 894 aa9.03□□□□□ -0.96
PHC3-216ENST00000497171 FECHP22830 423 aa9.02□□□□□ -0.97
PHC3-216ENST00000497171 BRICD5Q6PL45 260 aa9.02□□□□□ -0.97
PHC3-216ENST00000497171 RTN4Q9NQC3 1192 aaKnown RBP9.02□□□□□ -0.97
PHC3-216ENST00000497171 WIPF1O43516 503 aa9.01□□□□□ -0.97
PHC3-216ENST00000497171 NFX1Q12986 1120 aaKnown RBP9.01□□□□□ -0.97
PHC3-216ENST00000497171 ATP13A2Q9NQ11 1180 aa9.01□□□□□ -0.97
PHC3-216ENST00000497171 TRIM32Q13049 653 aa9□□□□□ -0.97
PHC3-216ENST00000497171 KIFC2Q96AC6 838 aa9□□□□□ -0.97
PHC3-216ENST00000497171 FAM181BA6NEQ2 426 aa8.98□□□□□ -0.97
PHC3-216ENST00000497171 SMPD1P17405 629 aa8.98□□□□□ -0.97
PHC3-216ENST00000497171 RBM26Q5T8P6 1007 aaKnown RBP8.98□□□□□ -0.97
PHC3-216ENST00000497171 TRIM47Q96LD4 638 aa8.98□□□□□ -0.97
PHC3-216ENST00000497171 RNF19BQ6ZMZ0 732 aa8.97□□□□□ -0.97
PHC3-216ENST00000497171 TERTO14746 1132 aaKnown RBP8.96□□□□□ -0.98
PHC3-216ENST00000497171 MRGPRX2Q96LB1 330 aa8.96□□□□□ -0.98
PHC3-216ENST00000497171 TESPA1A2RU30 521 aaPredicted RBP8.95□□□□□ -0.98
PHC3-216ENST00000497171 SLC16A10Q8TF71 515 aa8.95□□□□□ -0.98
PHC3-216ENST00000497171 NLRP7Q8WX94 980 aa8.95□□□□□ -0.98
PHC3-216ENST00000497171 SNRPBP14678 240 aaKnown RBP8.94□□□□□ -0.98
PHC3-216ENST00000497171 MMP16P51512 607 aa8.94□□□□□ -0.98
PHC3-216ENST00000497171 CCDC24Q8N4L8 307 aa8.93□□□□□ -0.98
PHC3-216ENST00000497171 USB1Q9BQ65 265 aaKnown RBP8.93□□□□□ -0.98
PHC3-216ENST00000497171 J3QL48 77 aa8.92□□□□□ -0.98
PHC3-216ENST00000497171 WNT7BP56706 349 aa8.91□□□□□ -0.98
PHC3-216ENST00000497171 DXOO77932 396 aaKnown RBP8.9□□□□□ -0.98
PHC3-216ENST00000497171 HPS1Q92902 700 aa8.9□□□□□ -0.98
PHC3-216ENST00000497171 KDM4AO75164 1064 aa8.89□□□□□ -0.99
PHC3-216ENST00000497171 USP46P62068 366 aa8.89□□□□□ -0.99
PHC3-216ENST00000497171 RC3H1Q5TC82 1133 aaKnown RBP8.89□□□□□ -0.99
PHC3-216ENST00000497171 GPIHBP1Q8IV16 184 aa8.89□□□□□ -0.99
PHC3-216ENST00000497171 GPR37O15354 613 aa8.88□□□□□ -0.99
PHC3-216ENST00000497171 ALDH1A1P00352 501 aa8.87□□□□□ -0.99
PHC3-216ENST00000497171 PHOX2BQ99453 314 aa8.87□□□□□ -0.99
PHC3-216ENST00000497171 CD46P15529 392 aa8.85□□□□□ -0.99
PHC3-216ENST00000497171 WASF2Q9Y6W5 498 aa8.85□□□□□ -0.99
PHC3-216ENST00000497171 NPAS3Q8IXF0 933 aa8.84□□□□□ -0.99
PHC3-216ENST00000497171 EHBP1Q8NDI1 1231 aa8.84□□□□□ -0.99
PHC3-216ENST00000497171 IRF7Q92985 503 aa8.84□□□□□ -0.99
PHC3-216ENST00000497171 NXF1Q9UBU9 619 aaKnown RBP8.84□□□□□ -0.99
PHC3-216ENST00000497171 TULP1O00294 542 aaPredicted RBP8.81□□□□□ -1
PHC3-216ENST00000497171 CAPN5O15484 640 aaPredicted RBP8.81□□□□□ -1
PHC3-216ENST00000497171 JUNDP17535 347 aa8.81□□□□□ -1
PHC3-216ENST00000497171 SKOR1P84550 965 aa8.81□□□□□ -1
PHC3-216ENST00000497171 ZSCAN1Q8NBB4 408 aa8.81□□□□□ -1
PHC3-216ENST00000497171 HOXA2O43364 376 aa8.79□□□□□ -1
PHC3-216ENST00000497171 MAP2K5Q13163 448 aa8.79□□□□□ -1
PHC3-216ENST00000497171 LCE2CQ5TA81 110 aa8.79□□□□□ -1
PHC3-216ENST00000497171 NUDT12Q9BQG2 462 aa8.79□□□□□ -1
PHC3-216ENST00000497171 GMPRP36959 345 aa8.78□□□□□ -1
PHC3-216ENST00000497171 BMP1P13497 986 aa8.77□□□□□ -1.01
PHC3-216ENST00000497171 MDM2Q00987 491 aaPredicted RBP8.77□□□□□ -1.01
PHC3-216ENST00000497171 RETREG3Q86VR2 466 aa8.77□□□□□ -1.01
PHC3-216ENST00000497171 NUTM1Q86Y26 1132 aa8.76□□□□□ -1.01
PHC3-216ENST00000497171 KRI1Q8N9T8 703 aaKnown RBP8.75□□□□□ -1.01
PHC3-216ENST00000497171 HLA-CQ95604 372 aa8.75□□□□□ -1.01
PHC3-216ENST00000497171 PLEKHG3A1L390 1219 aa8.73□□□□□ -1.01
PHC3-216ENST00000497171 H3BM21 787 aa8.73□□□□□ -1.01
PHC3-216ENST00000497171 CCNYL3P0C7X3 344 aa8.73□□□□□ -1.01
PHC3-216ENST00000497171 MS4A1P11836 297 aa8.73□□□□□ -1.01
PHC3-216ENST00000497171 CLCN1P35523 988 aa8.73□□□□□ -1.01
PHC3-216ENST00000497171 SCARF1Q14162 830 aa8.73□□□□□ -1.01
PHC3-216ENST00000497171 TRIM46Q7Z4K8 759 aa8.73□□□□□ -1.01
PHC3-216ENST00000497171 IRF6O14896 467 aa8.72□□□□□ -1.01
PHC3-216ENST00000497171 SIAH2O43255 324 aa8.72□□□□□ -1.01
PHC3-216ENST00000497171 GUCA2AQ02747 115 aa8.72□□□□□ -1.01
PHC3-216ENST00000497171 C6orf229H3BNL8 230 aa8.71□□□□□ -1.02
PHC3-216ENST00000497171 VEGFBP49765 207 aa8.71□□□□□ -1.02
PHC3-216ENST00000497171 GPCPD1Q9NPB8 672 aa8.71□□□□□ -1.02
PHC3-216ENST00000497171 MINK1Q8N4C8 1332 aaPredicted RBP8.71□□□□□ -1.02
PHC3-216ENST00000497171 SYMPKQ92797 1274 aaKnown RBP8.7□□□□□ -1.02
PHC3-216ENST00000497171 ZFP42Q96MM3 310 aa8.7□□□□□ -1.02
PHC3-216ENST00000497171 FDX1P10109 184 aa8.69□□□□□ -1.02
PHC3-216ENST00000497171 SH3BP2P78314 561 aa8.69□□□□□ -1.02
PHC3-216ENST00000497171 PTCRAQ6ISU1 281 aaPredicted RBP8.69□□□□□ -1.02
PHC3-216ENST00000497171 PTPRNQ16849 979 aa8.68□□□□□ -1.02
PHC3-216ENST00000497171 LINC01559Q495D7 138 aa8.67□□□□□ -1.02
PHC3-216ENST00000497171 UNC93B1Q9H1C4 597 aa8.67□□□□□ -1.02
PHC3-216ENST00000497171 FAM217BQ9NTX9 383 aaPredicted RBP8.67□□□□□ -1.02
PHC3-216ENST00000497171 VARSP26640 1264 aaKnown RBP8.66□□□□□ -1.02
PHC3-216ENST00000497171 NNTQ13423 1086 aa8.66□□□□□ -1.02
PHC3-216ENST00000497171 MRPL14Q6P1L8 145 aaKnown RBP8.66□□□□□ -1.02
PHC3-216ENST00000497171 CCDC102AQ96A19 550 aa8.66□□□□□ -1.02
PHC3-216ENST00000497171 TLL2Q9Y6L7 1015 aa8.66□□□□□ -1.02
PHC3-216ENST00000497171 ERBB4Q15303 1308 aa8.65□□□□□ -1.02
PHC3-216ENST00000497171 ADH1CP00326 375 aa8.65□□□□□ -1.02
PHC3-216ENST00000497171 WDR4P57081 412 aaKnown RBP8.63□□□□□ -1.03
PHC3-216ENST00000497171 PLCB2Q00722 1185 aa8.63□□□□□ -1.03
PHC3-216ENST00000497171 MPNDQ8N594 471 aa8.63□□□□□ -1.03
PHC3-216ENST00000497171 ZNF511Q8NB15 262 aa8.63□□□□□ -1.03
PHC3-216ENST00000497171 FAM174AQ8TBP5 190 aa8.63□□□□□ -1.03
PHC3-216ENST00000497171 BAP1Q92560 729 aa8.63□□□□□ -1.03
PHC3-216ENST00000497171 PURBQ96QR8 312 aaKnown RBP8.63□□□□□ -1.03
PHC3-216ENST00000497171 EVA1BQ9NVM1 165 aa8.63□□□□□ -1.03
PHC3-216ENST00000497171 SPDYE5A6NIY4 337 aa8.62□□□□□ -1.03
PHC3-216ENST00000497171 LORP23490 312 aaPredicted RBP8.62□□□□□ -1.03
PHC3-216ENST00000497171 KCNH2Q12809 1159 aa8.62□□□□□ -1.03
PHC3-216ENST00000497171 MAN1A2O60476 641 aa8.61□□□□□ -1.03
PHC3-216ENST00000497171 UPP2O95045 317 aa8.6□□□□□ -1.03
PHC3-216ENST00000497171 TIMP2P16035 220 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms