RNA–Protein interactions for RNA: ENST00000494546.1

CBX4-203, Transcript of chromobox 4, humanhuman

TSL 3

Gene CBX4, Length 432 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-203ENST00000494546 ORAI2Q96SN7 254 aa48.41■■■■■ 5.34
CBX4-203ENST00000494546 CDC42BPGQ6DT37 1551 aa48.4■■■■■ 5.34
CBX4-203ENST00000494546 STAC3Q96MF2 364 aa48.39■■■■■ 5.34
CBX4-203ENST00000494546 SOCS7O14512 581 aa48.38■■■■■ 5.34
CBX4-203ENST00000494546 SIRT1Q96EB6 747 aa48.37■■■■■ 5.33
CBX4-203ENST00000494546 SPATA31A6Q5VVP1 1343 aa48.36■■■■■ 5.33
CBX4-203ENST00000494546 RGS17Q9UGC6 210 aaPredicted RBP48.36■■■■■ 5.33
CBX4-203ENST00000494546 SHPRHQ149N8 1683 aa48.33■■■■■ 5.33
CBX4-203ENST00000494546 LRRC59Q96AG4 307 aaKnown RBP48.32■■■■■ 5.33
CBX4-203ENST00000494546 NUTM2FA1L443 756 aa48.3■■■■■ 5.32
CBX4-203ENST00000494546 ESCO1Q5FWF5 840 aa48.29■■■■■ 5.32
CBX4-203ENST00000494546 PRAM1Q96QH2 718 aa48.29■■■■■ 5.32
CBX4-203ENST00000494546 ADGRB1O14514 1584 aa48.29■■■■■ 5.32
CBX4-203ENST00000494546 SAFB2Q14151 953 aaKnown RBP eCLIP48.27■■■■■ 5.32
CBX4-203ENST00000494546 LRP6O75581 1613 aa48.26■■■■■ 5.32
CBX4-203ENST00000494546 MEX3CQ5U5Q3 659 aaKnown RBP48.24■■■■■ 5.31
CBX4-203ENST00000494546 POGKQ9P215 609 aa48.24■■■■■ 5.31
CBX4-203ENST00000494546 TRAK1Q9UPV9 953 aa48.23■■■■■ 5.31
CBX4-203ENST00000494546 NUTM2BA6NNL0 878 aaPredicted RBP48.22■■■■■ 5.31
CBX4-203ENST00000494546 NUTM2EB1AL46 878 aaPredicted RBP48.22■■■■■ 5.31
CBX4-203ENST00000494546 NUTM2AQ8IVF1 878 aaPredicted RBP48.22■■■■■ 5.31
CBX4-203ENST00000494546 DLC1Q96QB1 1528 aa48.22■■■■■ 5.31
CBX4-203ENST00000494546 SOS2Q07890 1332 aaPredicted RBP48.18■■■■■ 5.3
CBX4-203ENST00000494546 FMN2Q9NZ56 1722 aa48.16■■■■■ 5.3
CBX4-203ENST00000494546 PNPLA6Q8IY17 1366 aa48.15■■■■■ 5.3
CBX4-203ENST00000494546 NPHP3Q7Z494 1330 aa48.13■■■■■ 5.3
CBX4-203ENST00000494546 POTEAQ6S8J7 498 aa48.13■■■■■ 5.3
CBX4-203ENST00000494546 FOXO3O43524 673 aa48.11■■■■■ 5.29
CBX4-203ENST00000494546 XPCQ01831 940 aaPredicted RBP48.06■■■■■ 5.28
CBX4-203ENST00000494546 SIN3AQ96ST3 1273 aa48.06■■■■■ 5.28
CBX4-203ENST00000494546 TRIM26Q12899 539 aaPredicted RBP48.04■■■■■ 5.28
CBX4-203ENST00000494546 HIRIP3Q9BW71 556 aaPredicted RBP48.03■■■■■ 5.28
CBX4-203ENST00000494546 MINK1Q8N4C8 1332 aaPredicted RBP48.02■■■■■ 5.28
CBX4-203ENST00000494546 PXDNQ92626 1479 aa48.01■■■■■ 5.28
CBX4-203ENST00000494546 NEUROD1Q13562 356 aa48■■■■■ 5.27
CBX4-203ENST00000494546 L3MBTL2Q969R5 705 aa47.97■■■■■ 5.27
CBX4-203ENST00000494546 ADGRB2O60241 1585 aa47.96■■■■■ 5.27
CBX4-203ENST00000494546 KIF1AQ12756 1690 aa47.96■■■■■ 5.27
CBX4-203ENST00000494546 ZNF772Q68DY9 489 aaPredicted RBP47.95■■■■■ 5.27
CBX4-203ENST00000494546 PHF8Q9UPP1 1060 aa47.95■■■■■ 5.27
CBX4-203ENST00000494546 KIAA1210Q9ULL0 1709 aa47.94■■■■■ 5.26
CBX4-203ENST00000494546 RGPD8O14715 1765 aaPredicted RBP47.93■■■■■ 5.26
CBX4-203ENST00000494546 NBPF1Q3BBV0 1214 aa47.92■■■■■ 5.26
CBX4-203ENST00000494546 ARHGEF28Q8N1W1 1705 aaKnown RBP47.91■■■■■ 5.26
CBX4-203ENST00000494546 ADAMTS2O95450 1211 aa47.91■■■■■ 5.26
CBX4-203ENST00000494546 C8orf37Q96NL8 207 aa47.91■■■■■ 5.26
CBX4-203ENST00000494546 ANKARQ7Z5J8 1434 aa47.89■■■■■ 5.26
CBX4-203ENST00000494546 AFF2P51816 1311 aa47.87■■■■■ 5.25
CBX4-203ENST00000494546 KRT28Q7Z3Y7 464 aa47.87■■■■■ 5.25
CBX4-203ENST00000494546 WASLO00401 505 aaPredicted RBP47.86■■■■■ 5.25
CBX4-203ENST00000494546 USP32Q8NFA0 1604 aa47.85■■■■■ 5.25
CBX4-203ENST00000494546 EIF3AQ14152 1382 aaKnown RBP47.84■■■■■ 5.25
CBX4-203ENST00000494546 COL22A1Q8NFW1 1626 aaPredicted RBP47.84■■■■■ 5.25
CBX4-203ENST00000494546 PMFBP1Q8TBY8 1022 aa47.82■■■■■ 5.25
CBX4-203ENST00000494546 SPATA31A3Q5VYP0 1347 aa47.8■■■■■ 5.24
CBX4-203ENST00000494546 PRR36Q9H6K5 1346 aa47.79■■■■■ 5.24
CBX4-203ENST00000494546 TULP4Q9NRJ4 1543 aa47.78■■■■■ 5.24
CBX4-203ENST00000494546 PSME1Q06323 249 aa47.78■■■■■ 5.24
CBX4-203ENST00000494546 NGLY1Q96IV0 654 aa47.78■■■■■ 5.24
CBX4-203ENST00000494546 TNS3Q68CZ2 1445 aa47.69■■■■■ 5.22
CBX4-203ENST00000494546 RXRBP28702 533 aa47.68■■■■■ 5.22
CBX4-203ENST00000494546 CDK19Q9BWU1 502 aa47.67■■■■■ 5.22
CBX4-203ENST00000494546 SBNO1A3KN83 1393 aa47.66■■■■■ 5.22
CBX4-203ENST00000494546 LMOD2Q6P5Q4 547 aa47.66■■■■■ 5.22
CBX4-203ENST00000494546 NUDT16Q96DE0 195 aaKnown RBP47.64■■■■■ 5.22
CBX4-203ENST00000494546 CENPJQ9HC77 1338 aaPredicted RBP47.63■■■■■ 5.22
CBX4-203ENST00000494546 QTRT2Q9H974 415 aaKnown RBP47.63■■■■■ 5.22
CBX4-203ENST00000494546 TRPM1Q7Z4N2 1603 aa47.62■■■■■ 5.21
CBX4-203ENST00000494546 GPRASP1Q5JY77 1395 aa47.62■■■■■ 5.21
CBX4-203ENST00000494546 ATP7BP35670 1465 aa47.61■■■■■ 5.21
CBX4-203ENST00000494546 NGDNQ8NEJ9 315 aaKnown RBP47.61■■■■■ 5.21
CBX4-203ENST00000494546 PLEKHG5O94827 1062 aa47.6■■■■■ 5.21
CBX4-203ENST00000494546 USP21Q9UK80 565 aa47.6■■■■■ 5.21
CBX4-203ENST00000494546 ROCK2O75116 1388 aaKnown RBP47.58■■■■■ 5.21
CBX4-203ENST00000494546 FNBP4Q8N3X1 1017 aaPredicted RBP47.57■■■■■ 5.21
CBX4-203ENST00000494546 HAP1P54257 671 aaPredicted RBP47.56■■■■■ 5.2
CBX4-203ENST00000494546 ARHGEF10O15013 1369 aa47.56■■■■■ 5.2
CBX4-203ENST00000494546 TONSLQ96HA7 1378 aa47.54■■■■■ 5.2
CBX4-203ENST00000494546 NBPF8Q3BBV2 869 aa47.54■■■■■ 5.2
CBX4-203ENST00000494546 CABLES1Q8TDN4 633 aa47.54■■■■■ 5.2
CBX4-203ENST00000494546 ITSN1Q15811 1721 aa47.53■■■■■ 5.2
CBX4-203ENST00000494546 MARF1Q9Y4F3 1742 aaKnown RBP47.51■■■■■ 5.2
CBX4-203ENST00000494546 RBM6P78332 1123 aaKnown RBP47.51■■■■■ 5.2
CBX4-203ENST00000494546 SRPK2P78362 688 aaKnown RBP47.49■■■■■ 5.19
CBX4-203ENST00000494546 TRPM3Q9HCF6 1732 aaPredicted RBP47.49■■■■■ 5.19
CBX4-203ENST00000494546 QRICH2Q9H0J4 1663 aa47.48■■■■■ 5.19
CBX4-203ENST00000494546 CCDC61Q9Y6R9 512 aa47.48■■■■■ 5.19
CBX4-203ENST00000494546 TRPC5Q9UL62 973 aaPredicted RBP47.47■■■■■ 5.19
CBX4-203ENST00000494546 CDK12Q9NYV4 1490 aaPredicted RBP47.46■■■■■ 5.19
CBX4-203ENST00000494546 PAK3O75914 559 aaPredicted RBP47.45■■■■■ 5.19
CBX4-203ENST00000494546 CABP2Q9NPB3 220 aa47.43■■■■■ 5.18
CBX4-203ENST00000494546 BCL9LQ86UU0 1499 aa47.41■■■■■ 5.18
CBX4-203ENST00000494546 TOPAZ1Q8N9V7 1692 aa47.41■■■■■ 5.18
CBX4-203ENST00000494546 ACEP12821 1306 aa47.39■■■■■ 5.18
CBX4-203ENST00000494546 ATRNO75882 1429 aa47.39■■■■■ 5.18
CBX4-203ENST00000494546 ALS2Q96Q42 1657 aa47.38■■■■■ 5.18
CBX4-203ENST00000494546 PLEKHG3A1L390 1219 aa47.37■■■■■ 5.17
CBX4-203ENST00000494546 ABCA3Q99758 1704 aa47.36■■■■■ 5.17
CBX4-203ENST00000494546 RGS12O14924 1447 aa47.36■■■■■ 5.17
CBX4-203ENST00000494546 POLR3AO14802 1390 aaPredicted RBP47.36■■■■■ 5.17
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms