RNA–Protein interactions for RNA: ENST00000493957.5

UBA3-211, Transcript of ubiquitin like modifier activating enzyme 3, humanhuman

TSL 3

Gene UBA3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBA3-211ENST00000493957 PTCH1Q13635 1447 aa16.94■□□□□ 0.3
UBA3-211ENST00000493957 PRAG1Q86YV5 1406 aa16.94■□□□□ 0.3
UBA3-211ENST00000493957 KIAA1210Q9ULL0 1709 aa16.93■□□□□ 0.3
UBA3-211ENST00000493957 ROBO1Q9Y6N7 1651 aa16.92■□□□□ 0.3
UBA3-211ENST00000493957 TOM1O60784 492 aa16.92■□□□□ 0.3
UBA3-211ENST00000493957 STK26Q9P289 416 aa16.92■□□□□ 0.3
UBA3-211ENST00000493957 YTHDC2Q9H6S0 1430 aaKnown RBP16.92■□□□□ 0.3
UBA3-211ENST00000493957 LRPPRCP42704 1394 aaKnown RBP16.91■□□□□ 0.3
UBA3-211ENST00000493957 MSH6P52701 1360 aa16.91■□□□□ 0.3
UBA3-211ENST00000493957 TECPR2O15040 1411 aa16.91■□□□□ 0.3
UBA3-211ENST00000493957 L3MBTL2Q969R5 705 aa16.91■□□□□ 0.3
UBA3-211ENST00000493957 ARHGEF28Q8N1W1 1705 aaKnown RBP16.9■□□□□ 0.3
UBA3-211ENST00000493957 NCOA3Q9Y6Q9 1424 aa16.9■□□□□ 0.3
UBA3-211ENST00000493957 MYCNP04198 464 aaPredicted RBP16.9■□□□□ 0.3
UBA3-211ENST00000493957 C14orf37Q86TY3 774 aa16.9■□□□□ 0.3
UBA3-211ENST00000493957 AKT1S1Q96B36 256 aa16.9■□□□□ 0.3
UBA3-211ENST00000493957 PLEKHH1Q9ULM0 1364 aa16.89■□□□□ 0.3
UBA3-211ENST00000493957 ADGRL3Q9HAR2 1447 aa16.89■□□□□ 0.29
UBA3-211ENST00000493957 TRPM1Q7Z4N2 1603 aa16.88■□□□□ 0.29
UBA3-211ENST00000493957 ABCC11Q96J66 1382 aa16.88■□□□□ 0.29
UBA3-211ENST00000493957 WAPLQ7Z5K2 1190 aa16.86■□□□□ 0.29
UBA3-211ENST00000493957 RGPD8O14715 1765 aaPredicted RBP16.86■□□□□ 0.29
UBA3-211ENST00000493957 C19orf44Q9H6X5 657 aa16.85■□□□□ 0.29
UBA3-211ENST00000493957 DLC1Q96QB1 1528 aa16.85■□□□□ 0.29
UBA3-211ENST00000493957 STAC3Q96MF2 364 aa16.84■□□□□ 0.29
UBA3-211ENST00000493957 DCCP43146 1447 aa16.84■□□□□ 0.29
UBA3-211ENST00000493957 FMN2Q9NZ56 1722 aa16.84■□□□□ 0.29
UBA3-211ENST00000493957 MST1RQ04912 1400 aa16.83■□□□□ 0.28
UBA3-211ENST00000493957 NBPF1Q3BBV0 1214 aa16.83■□□□□ 0.28
UBA3-211ENST00000493957 CDC42BPGQ6DT37 1551 aa16.83■□□□□ 0.28
UBA3-211ENST00000493957 PHLPP1O60346 1717 aa16.82■□□□□ 0.28
UBA3-211ENST00000493957 HSPA1LP34931 641 aa16.82■□□□□ 0.28
UBA3-211ENST00000493957 PIP4P2Q8N4L2 257 aa16.82■□□□□ 0.28
UBA3-211ENST00000493957 SLAIN2Q9P270 581 aa16.82■□□□□ 0.28
UBA3-211ENST00000493957 TRAK1Q9UPV9 953 aa16.82■□□□□ 0.28
UBA3-211ENST00000493957 FAM135BQ49AJ0 1406 aa16.81■□□□□ 0.28
UBA3-211ENST00000493957 ATF3P18847 181 aa16.81■□□□□ 0.28
UBA3-211ENST00000493957 TONSLQ96HA7 1378 aa16.8■□□□□ 0.28
UBA3-211ENST00000493957 SAFB2Q14151 953 aaKnown RBP eCLIP16.8■□□□□ 0.28
UBA3-211ENST00000493957 NBPF8Q3BBV2 869 aa16.8■□□□□ 0.28
UBA3-211ENST00000493957 CADPS2Q86UW7 1296 aa16.8■□□□□ 0.28
UBA3-211ENST00000493957 NHSL1Q5SYE7 1610 aa16.79■□□□□ 0.28
UBA3-211ENST00000493957 PRAM1Q96QH2 718 aa16.79■□□□□ 0.28
UBA3-211ENST00000493957 QRICH2Q9H0J4 1663 aa16.78■□□□□ 0.28
UBA3-211ENST00000493957 ADGRB2O60241 1585 aa16.77■□□□□ 0.28
UBA3-211ENST00000493957 COL16A1Q07092 1604 aaPredicted RBP16.77■□□□□ 0.27
UBA3-211ENST00000493957 USP32Q8NFA0 1604 aa16.77■□□□□ 0.27
UBA3-211ENST00000493957 C1orf167Q5SNV9 1468 aa16.76■□□□□ 0.27
UBA3-211ENST00000493957 SIRT1Q96EB6 747 aa16.76■□□□□ 0.27
UBA3-211ENST00000493957 AHDC1Q5TGY3 1603 aaPredicted RBP16.76■□□□□ 0.27
UBA3-211ENST00000493957 BRINP3Q76B58 766 aa16.75■□□□□ 0.27
UBA3-211ENST00000493957 REM2Q8IYK8 340 aaPredicted RBP16.75■□□□□ 0.27
UBA3-211ENST00000493957 POGKQ9P215 609 aa16.74■□□□□ 0.27
UBA3-211ENST00000493957 NUTM2FA1L443 756 aa16.73■□□□□ 0.27
UBA3-211ENST00000493957 CCER1Q8TC90 406 aaPredicted RBP16.73■□□□□ 0.27
UBA3-211ENST00000493957 RALGAPBQ86X10 1494 aa16.73■□□□□ 0.27
UBA3-211ENST00000493957 MINK1Q8N4C8 1332 aaPredicted RBP16.72■□□□□ 0.27
UBA3-211ENST00000493957 DDX17Q92841 729 aaKnown RBP16.72■□□□□ 0.27
UBA3-211ENST00000493957 HIRIP3Q9BW71 556 aaPredicted RBP16.72■□□□□ 0.27
UBA3-211ENST00000493957 ORAI2Q96SN7 254 aa16.71■□□□□ 0.27
UBA3-211ENST00000493957 ROCK2O75116 1388 aaKnown RBP16.71■□□□□ 0.27
UBA3-211ENST00000493957 CLSPNQ9HAW4 1339 aa16.7■□□□□ 0.26
UBA3-211ENST00000493957 HAX1O00165 279 aa16.69■□□□□ 0.26
UBA3-211ENST00000493957 KIF1AQ12756 1690 aa16.69■□□□□ 0.26
UBA3-211ENST00000493957 GPRASP1Q5JY77 1395 aa16.68■□□□□ 0.26
UBA3-211ENST00000493957 ZBTB12Q9Y330 459 aaPredicted RBP16.68■□□□□ 0.26
UBA3-211ENST00000493957 ITSN1Q15811 1721 aa16.67■□□□□ 0.26
UBA3-211ENST00000493957 SHPRHQ149N8 1683 aa16.67■□□□□ 0.26
UBA3-211ENST00000493957 TOPAZ1Q8N9V7 1692 aa16.67■□□□□ 0.26
UBA3-211ENST00000493957 TULP4Q9NRJ4 1543 aa16.66■□□□□ 0.26
UBA3-211ENST00000493957 MED1Q15648 1581 aaPredicted RBP16.66■□□□□ 0.26
UBA3-211ENST00000493957 PRR36Q9H6K5 1346 aa16.66■□□□□ 0.26
UBA3-211ENST00000493957 ESCO1Q5FWF5 840 aa16.65■□□□□ 0.26
UBA3-211ENST00000493957 CENPJQ9HC77 1338 aaPredicted RBP16.65■□□□□ 0.26
UBA3-211ENST00000493957 ATP7BP35670 1465 aa16.63■□□□□ 0.25
UBA3-211ENST00000493957 WASLO00401 505 aaPredicted RBP16.63■□□□□ 0.25
UBA3-211ENST00000493957 ANKARQ7Z5J8 1434 aa16.62■□□□□ 0.25
UBA3-211ENST00000493957 PXDNQ92626 1479 aa16.62■□□□□ 0.25
UBA3-211ENST00000493957 CARD11Q9BXL7 1154 aa16.62■□□□□ 0.25
UBA3-211ENST00000493957 XPCQ01831 940 aaPredicted RBP16.61■□□□□ 0.25
UBA3-211ENST00000493957 TRPM3Q9HCF6 1732 aaPredicted RBP16.6■□□□□ 0.25
UBA3-211ENST00000493957 PITPNM1O00562 1244 aa16.6■□□□□ 0.25
UBA3-211ENST00000493957 FOXO3O43524 673 aa16.59■□□□□ 0.25
UBA3-211ENST00000493957 FXR2P51116 673 aaKnown RBP eCLIP16.59■□□□□ 0.25
UBA3-211ENST00000493957 CDK19Q9BWU1 502 aa16.59■□□□□ 0.25
UBA3-211ENST00000493957 ATF5Q9Y2D1 282 aaPredicted RBP16.59■□□□□ 0.25
UBA3-211ENST00000493957 JCADQ9P266 1359 aa16.59■□□□□ 0.25
UBA3-211ENST00000493957 PMFBP1Q8TBY8 1022 aa16.58■□□□□ 0.24
UBA3-211ENST00000493957 PHF8Q9UPP1 1060 aa16.58■□□□□ 0.24
UBA3-211ENST00000493957 SOS2Q07890 1332 aaPredicted RBP16.58■□□□□ 0.24
UBA3-211ENST00000493957 EIF3AQ14152 1382 aaKnown RBP16.58■□□□□ 0.24
UBA3-211ENST00000493957 LRP6O75581 1613 aa16.58■□□□□ 0.24
UBA3-211ENST00000493957 TIMELESSQ9UNS1 1208 aa16.57■□□□□ 0.24
UBA3-211ENST00000493957 COL22A1Q8NFW1 1626 aaPredicted RBP16.56■□□□□ 0.24
UBA3-211ENST00000493957 PNPLA6Q8IY17 1366 aa16.56■□□□□ 0.24
UBA3-211ENST00000493957 CABP2Q9NPB3 220 aa16.56■□□□□ 0.24
UBA3-211ENST00000493957 NPHP3Q7Z494 1330 aa16.55■□□□□ 0.24
UBA3-211ENST00000493957 NUDT16Q96DE0 195 aaKnown RBP16.55■□□□□ 0.24
UBA3-211ENST00000493957 ABCA3Q99758 1704 aa16.55■□□□□ 0.24
UBA3-211ENST00000493957 ALS2Q96Q42 1657 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms