RNA–Protein interactions for RNA: ENST00000491330.1

PDLIM2-217, Transcript of PDZ and LIM domain 2, humanhuman

TSL 3

Gene PDLIM2, Length 563 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-217ENST00000491330 NPHP3Q7Z494 1330 aa24.1■■□□□ 1.45
PDLIM2-217ENST00000491330 CFAP70Q5T0N1 1121 aa24.1■■□□□ 1.45
PDLIM2-217ENST00000491330 ORAI2Q96SN7 254 aa24.1■■□□□ 1.45
PDLIM2-217ENST00000491330 TECPR2O15040 1411 aa24.1■■□□□ 1.45
PDLIM2-217ENST00000491330 YTHDC2Q9H6S0 1430 aaKnown RBP24.1■■□□□ 1.45
PDLIM2-217ENST00000491330 MYOM2P54296 1465 aa24.09■■□□□ 1.45
PDLIM2-217ENST00000491330 POTEAQ6S8J7 498 aa24.07■■□□□ 1.44
PDLIM2-217ENST00000491330 SETD1AO15047 1707 aaKnown RBP24.06■■□□□ 1.44
PDLIM2-217ENST00000491330 NALCNQ8IZF0 1738 aa24.06■■□□□ 1.44
PDLIM2-217ENST00000491330 DDX17Q92841 729 aaKnown RBP24.05■■□□□ 1.44
PDLIM2-217ENST00000491330 NUTM2FA1L443 756 aa24.03■■□□□ 1.44
PDLIM2-217ENST00000491330 SOS2Q07890 1332 aaPredicted RBP24.03■■□□□ 1.44
PDLIM2-217ENST00000491330 PRAM1Q96QH2 718 aa24.02■■□□□ 1.44
PDLIM2-217ENST00000491330 SHPRHQ149N8 1683 aa24.02■■□□□ 1.44
PDLIM2-217ENST00000491330 NRXN1Q9ULB1 1477 aa24.01■■□□□ 1.43
PDLIM2-217ENST00000491330 CDC42BPGQ6DT37 1551 aa24.01■■□□□ 1.43
PDLIM2-217ENST00000491330 FOXO3O43524 673 aa24.01■■□□□ 1.43
PDLIM2-217ENST00000491330 LAMC1P11047 1609 aa24.01■■□□□ 1.43
PDLIM2-217ENST00000491330 IFT172Q9UG01 1749 aa24.01■■□□□ 1.43
PDLIM2-217ENST00000491330 RXRBP28702 533 aa24■■□□□ 1.43
PDLIM2-217ENST00000491330 PSME1Q06323 249 aa24■■□□□ 1.43
PDLIM2-217ENST00000491330 NGLY1Q96IV0 654 aa24■■□□□ 1.43
PDLIM2-217ENST00000491330 C8orf37Q96NL8 207 aa24■■□□□ 1.43
PDLIM2-217ENST00000491330 PNPLA6Q8IY17 1366 aa24■■□□□ 1.43
PDLIM2-217ENST00000491330 SAFB2Q14151 953 aaKnown RBP eCLIP23.98■■□□□ 1.43
PDLIM2-217ENST00000491330 TRAK1Q9UPV9 953 aa23.98■■□□□ 1.43
PDLIM2-217ENST00000491330 NHSL1Q5SYE7 1610 aa23.98■■□□□ 1.43
PDLIM2-217ENST00000491330 LRP6O75581 1613 aa23.97■■□□□ 1.43
PDLIM2-217ENST00000491330 ADAMTS2O95450 1211 aa23.97■■□□□ 1.43
PDLIM2-217ENST00000491330 AFF2P51816 1311 aa23.97■■□□□ 1.43
PDLIM2-217ENST00000491330 PLEKHH1Q9ULM0 1364 aa23.96■■□□□ 1.43
PDLIM2-217ENST00000491330 EIF3AQ14152 1382 aaKnown RBP23.95■■□□□ 1.42
PDLIM2-217ENST00000491330 KNDC1Q76NI1 1749 aa23.93■■□□□ 1.42
PDLIM2-217ENST00000491330 HAP1P54257 671 aaPredicted RBP23.93■■□□□ 1.42
PDLIM2-217ENST00000491330 PHF8Q9UPP1 1060 aa23.93■■□□□ 1.42
PDLIM2-217ENST00000491330 XPCQ01831 940 aaPredicted RBP23.91■■□□□ 1.42
PDLIM2-217ENST00000491330 KRT28Q7Z3Y7 464 aa23.91■■□□□ 1.42
PDLIM2-217ENST00000491330 QTRT2Q9H974 415 aaKnown RBP23.91■■□□□ 1.42
PDLIM2-217ENST00000491330 DLC1Q96QB1 1528 aa23.89■■□□□ 1.42
PDLIM2-217ENST00000491330 RBM6P78332 1123 aaKnown RBP23.88■■□□□ 1.41
PDLIM2-217ENST00000491330 USP21Q9UK80 565 aa23.87■■□□□ 1.41
PDLIM2-217ENST00000491330 MINK1Q8N4C8 1332 aaPredicted RBP23.86■■□□□ 1.41
PDLIM2-217ENST00000491330 LMOD2Q6P5Q4 547 aa23.86■■□□□ 1.41
PDLIM2-217ENST00000491330 HIRIP3Q9BW71 556 aaPredicted RBP23.85■■□□□ 1.41
PDLIM2-217ENST00000491330 TRPC5Q9UL62 973 aaPredicted RBP23.85■■□□□ 1.41
PDLIM2-217ENST00000491330 SPATA31A3Q5VYP0 1347 aa23.84■■□□□ 1.41
PDLIM2-217ENST00000491330 ANKARQ7Z5J8 1434 aa23.84■■□□□ 1.41
PDLIM2-217ENST00000491330 GPRASP1Q5JY77 1395 aa23.84■■□□□ 1.41
PDLIM2-217ENST00000491330 WASLO00401 505 aaPredicted RBP23.83■■□□□ 1.41
PDLIM2-217ENST00000491330 KIF1AQ12756 1690 aa23.82■■□□□ 1.4
PDLIM2-217ENST00000491330 PXDNQ92626 1479 aa23.81■■□□□ 1.4
PDLIM2-217ENST00000491330 FNBP4Q8N3X1 1017 aaPredicted RBP23.81■■□□□ 1.4
PDLIM2-217ENST00000491330 NGDNQ8NEJ9 315 aaKnown RBP23.81■■□□□ 1.4
PDLIM2-217ENST00000491330 PMFBP1Q8TBY8 1022 aa23.81■■□□□ 1.4
PDLIM2-217ENST00000491330 ARHGEF10O15013 1369 aa23.8■■□□□ 1.4
PDLIM2-217ENST00000491330 ADGRB1O14514 1584 aa23.8■■□□□ 1.4
PDLIM2-217ENST00000491330 FMN2Q9NZ56 1722 aa23.8■■□□□ 1.4
PDLIM2-217ENST00000491330 CDK12Q9NYV4 1490 aaPredicted RBP23.79■■□□□ 1.4
PDLIM2-217ENST00000491330 TRIM26Q12899 539 aaPredicted RBP23.78■■□□□ 1.4
PDLIM2-217ENST00000491330 SBNO1A3KN83 1393 aa23.78■■□□□ 1.4
PDLIM2-217ENST00000491330 NEUROD1Q13562 356 aa23.76■■□□□ 1.39
PDLIM2-217ENST00000491330 TNS3Q68CZ2 1445 aa23.75■■□□□ 1.39
PDLIM2-217ENST00000491330 PAK3O75914 559 aaPredicted RBP23.73■■□□□ 1.39
PDLIM2-217ENST00000491330 PLEKHG5O94827 1062 aa23.73■■□□□ 1.39
PDLIM2-217ENST00000491330 COL22A1Q8NFW1 1626 aaPredicted RBP23.73■■□□□ 1.39
PDLIM2-217ENST00000491330 L3MBTL2Q969R5 705 aa23.72■■□□□ 1.39
PDLIM2-217ENST00000491330 NUDT16Q96DE0 195 aaKnown RBP23.72■■□□□ 1.39
PDLIM2-217ENST00000491330 ADGRB2O60241 1585 aa23.72■■□□□ 1.39
PDLIM2-217ENST00000491330 CDK19Q9BWU1 502 aa23.71■■□□□ 1.39
PDLIM2-217ENST00000491330 TULP4Q9NRJ4 1543 aa23.7■■□□□ 1.38
PDLIM2-217ENST00000491330 UNC5CLQ8IV45 518 aa23.7■■□□□ 1.38
PDLIM2-217ENST00000491330 CENPJQ9HC77 1338 aaPredicted RBP23.69■■□□□ 1.38
PDLIM2-217ENST00000491330 SRPK2P78362 688 aaKnown RBP23.69■■□□□ 1.38
PDLIM2-217ENST00000491330 CCDC61Q9Y6R9 512 aa23.69■■□□□ 1.38
PDLIM2-217ENST00000491330 NBPF1Q3BBV0 1214 aa23.68■■□□□ 1.38
PDLIM2-217ENST00000491330 UPF1Q92900 1129 aaKnown RBP eCLIP23.67■■□□□ 1.38
PDLIM2-217ENST00000491330 GJD4Q96KN9 370 aaPredicted RBP23.67■■□□□ 1.38
PDLIM2-217ENST00000491330 SIN3AQ96ST3 1273 aa23.67■■□□□ 1.38
PDLIM2-217ENST00000491330 CABLES1Q8TDN4 633 aa23.66■■□□□ 1.38
PDLIM2-217ENST00000491330 CCDC9Q9Y3X0 531 aaKnown RBP23.66■■□□□ 1.38
PDLIM2-217ENST00000491330 PRR36Q9H6K5 1346 aa23.65■■□□□ 1.38
PDLIM2-217ENST00000491330 ATRNO75882 1429 aa23.64■■□□□ 1.37
PDLIM2-217ENST00000491330 KIAA1210Q9ULL0 1709 aa23.64■■□□□ 1.37
PDLIM2-217ENST00000491330 ATAD2Q6PL18 1390 aa23.64■■□□□ 1.37
PDLIM2-217ENST00000491330 RGS12O14924 1447 aa23.61■■□□□ 1.37
PDLIM2-217ENST00000491330 ROCK2O75116 1388 aaKnown RBP23.61■■□□□ 1.37
PDLIM2-217ENST00000491330 BCL9LQ86UU0 1499 aa23.6■■□□□ 1.37
PDLIM2-217ENST00000491330 PLEKHG3A1L390 1219 aa23.59■■□□□ 1.37
PDLIM2-217ENST00000491330 EVC2Q86UK5 1308 aa23.59■■□□□ 1.37
PDLIM2-217ENST00000491330 TONSLQ96HA7 1378 aa23.58■■□□□ 1.37
PDLIM2-217ENST00000491330 VPS72Q15906 364 aa23.58■■□□□ 1.37
PDLIM2-217ENST00000491330 NBPF8Q3BBV2 869 aa23.58■■□□□ 1.37
PDLIM2-217ENST00000491330 ACEP12821 1306 aa23.58■■□□□ 1.36
PDLIM2-217ENST00000491330 PRDM11Q9NQV5 511 aa23.57■■□□□ 1.36
PDLIM2-217ENST00000491330 ARHGEF28Q8N1W1 1705 aaKnown RBP23.56■■□□□ 1.36
PDLIM2-217ENST00000491330 RGPD8O14715 1765 aaPredicted RBP23.56■■□□□ 1.36
PDLIM2-217ENST00000491330 SLIT2O94813 1529 aa23.56■■□□□ 1.36
PDLIM2-217ENST00000491330 CCDC125Q86Z20 511 aa23.56■■□□□ 1.36
PDLIM2-217ENST00000491330 USP32Q8NFA0 1604 aa23.55■■□□□ 1.36
PDLIM2-217ENST00000491330 A0A0G2JS52 829 aa23.55■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 227.8 ms