RNA–Protein interactions for RNA: ENST00000489728.1

CPSF7-212, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 4

Gene CPSF7, Length 488 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-212ENST00000489728 RALGAPBQ86X10 1494 aa15.87■□□□□ 0.13
CPSF7-212ENST00000489728 MST1RQ04912 1400 aa15.86■□□□□ 0.13
CPSF7-212ENST00000489728 ROBO1Q9Y6N7 1651 aa15.86■□□□□ 0.13
CPSF7-212ENST00000489728 PIP4K2BP78356 416 aa15.85■□□□□ 0.13
CPSF7-212ENST00000489728 PRAM1Q96QH2 718 aa15.85■□□□□ 0.13
CPSF7-212ENST00000489728 PLEKHH1Q9ULM0 1364 aa15.85■□□□□ 0.13
CPSF7-212ENST00000489728 WAPLQ7Z5K2 1190 aa15.84■□□□□ 0.13
CPSF7-212ENST00000489728 TRAK1Q9UPV9 953 aa15.84■□□□□ 0.13
CPSF7-212ENST00000489728 ROCK2O75116 1388 aaKnown RBP15.84■□□□□ 0.13
CPSF7-212ENST00000489728 FMN2Q9NZ56 1722 aa15.83■□□□□ 0.13
CPSF7-212ENST00000489728 POGKQ9P215 609 aa15.83■□□□□ 0.12
CPSF7-212ENST00000489728 SCAF1Q9H7N4 1312 aaKnown RBP15.83■□□□□ 0.12
CPSF7-212ENST00000489728 EIF3AQ14152 1382 aaKnown RBP15.83■□□□□ 0.12
CPSF7-212ENST00000489728 NBPF1Q3BBV0 1214 aa15.82■□□□□ 0.12
CPSF7-212ENST00000489728 C1orf167Q5SNV9 1468 aa15.82■□□□□ 0.12
CPSF7-212ENST00000489728 AHDC1Q5TGY3 1603 aaPredicted RBP15.82■□□□□ 0.12
CPSF7-212ENST00000489728 NBPF8Q3BBV2 869 aa15.81■□□□□ 0.12
CPSF7-212ENST00000489728 ANKARQ7Z5J8 1434 aa15.8■□□□□ 0.12
CPSF7-212ENST00000489728 NHSL1Q5SYE7 1610 aa15.79■□□□□ 0.12
CPSF7-212ENST00000489728 BRINP3Q76B58 766 aa15.78■□□□□ 0.12
CPSF7-212ENST00000489728 KIF1AQ12756 1690 aa15.77■□□□□ 0.12
CPSF7-212ENST00000489728 QRICH2Q9H0J4 1663 aa15.77■□□□□ 0.12
CPSF7-212ENST00000489728 CENPJQ9HC77 1338 aaPredicted RBP15.77■□□□□ 0.12
CPSF7-212ENST00000489728 TULP4Q9NRJ4 1543 aa15.77■□□□□ 0.11
CPSF7-212ENST00000489728 PHLPP1O60346 1717 aa15.77■□□□□ 0.11
CPSF7-212ENST00000489728 HSPA1LP34931 641 aa15.76■□□□□ 0.11
CPSF7-212ENST00000489728 COL16A1Q07092 1604 aaPredicted RBP15.76■□□□□ 0.11
CPSF7-212ENST00000489728 SBNO2Q9Y2G9 1366 aa15.75■□□□□ 0.11
CPSF7-212ENST00000489728 SAFB2Q14151 953 aaKnown RBP eCLIP15.75■□□□□ 0.11
CPSF7-212ENST00000489728 CARD11Q9BXL7 1154 aa15.75■□□□□ 0.11
CPSF7-212ENST00000489728 MINK1Q8N4C8 1332 aaPredicted RBP15.73■□□□□ 0.11
CPSF7-212ENST00000489728 USP32Q8NFA0 1604 aa15.73■□□□□ 0.11
CPSF7-212ENST00000489728 WASLO00401 505 aaPredicted RBP15.73■□□□□ 0.11
CPSF7-212ENST00000489728 ITSN1Q15811 1721 aa15.73■□□□□ 0.11
CPSF7-212ENST00000489728 ATP7BP35670 1465 aa15.71■□□□□ 0.1
CPSF7-212ENST00000489728 NPHP3Q7Z494 1330 aa15.7■□□□□ 0.1
CPSF7-212ENST00000489728 SLC24A1O60721 1099 aa15.7■□□□□ 0.1
CPSF7-212ENST00000489728 ESCO1Q5FWF5 840 aa15.7■□□□□ 0.1
CPSF7-212ENST00000489728 ORAI2Q96SN7 254 aa15.7■□□□□ 0.1
CPSF7-212ENST00000489728 HIRIP3Q9BW71 556 aaPredicted RBP15.7■□□□□ 0.1
CPSF7-212ENST00000489728 TOPAZ1Q8N9V7 1692 aa15.7■□□□□ 0.1
CPSF7-212ENST00000489728 SHPRHQ149N8 1683 aa15.69■□□□□ 0.1
CPSF7-212ENST00000489728 RGPD8O14715 1765 aaPredicted RBP15.69■□□□□ 0.1
CPSF7-212ENST00000489728 JCADQ9P266 1359 aa15.68■□□□□ 0.1
CPSF7-212ENST00000489728 SOS2Q07890 1332 aaPredicted RBP15.68■□□□□ 0.1
CPSF7-212ENST00000489728 EVC2Q86UK5 1308 aa15.68■□□□□ 0.1
CPSF7-212ENST00000489728 PXDNQ92626 1479 aa15.67■□□□□ 0.1
CPSF7-212ENST00000489728 CDK19Q9BWU1 502 aa15.66■□□□□ 0.1
CPSF7-212ENST00000489728 PHF8Q9UPP1 1060 aa15.66■□□□□ 0.1
CPSF7-212ENST00000489728 PRR36Q9H6K5 1346 aa15.66■□□□□ 0.1
CPSF7-212ENST00000489728 USP47Q96K76 1375 aa15.65■□□□□ 0.1
CPSF7-212ENST00000489728 NUTM2FA1L443 756 aa15.65■□□□□ 0.1
CPSF7-212ENST00000489728 LRRC59Q96AG4 307 aaKnown RBP15.65■□□□□ 0.1
CPSF7-212ENST00000489728 NUDT16Q96DE0 195 aaKnown RBP15.64■□□□□ 0.09
CPSF7-212ENST00000489728 CCDC61Q9Y6R9 512 aa15.64■□□□□ 0.09
CPSF7-212ENST00000489728 SPATA31A6Q5VVP1 1343 aa15.64■□□□□ 0.09
CPSF7-212ENST00000489728 PUS7Q96PZ0 661 aaKnown RBP15.63■□□□□ 0.09
CPSF7-212ENST00000489728 POLR3AO14802 1390 aaPredicted RBP15.62■□□□□ 0.09
CPSF7-212ENST00000489728 ATAD2Q6PL18 1390 aa15.62■□□□□ 0.09
CPSF7-212ENST00000489728 COL22A1Q8NFW1 1626 aaPredicted RBP15.62■□□□□ 0.09
CPSF7-212ENST00000489728 FOXO3O43524 673 aa15.62■□□□□ 0.09
CPSF7-212ENST00000489728 SRPK2P78362 688 aaKnown RBP15.62■□□□□ 0.09
CPSF7-212ENST00000489728 MED1Q15648 1581 aaPredicted RBP15.62■□□□□ 0.09
CPSF7-212ENST00000489728 SBNO1A3KN83 1393 aa15.62■□□□□ 0.09
CPSF7-212ENST00000489728 PLEKHG3A1L390 1219 aa15.61■□□□□ 0.09
CPSF7-212ENST00000489728 PSME1Q06323 249 aa15.61■□□□□ 0.09
CPSF7-212ENST00000489728 PNPLA6Q8IY17 1366 aa15.61■□□□□ 0.09
CPSF7-212ENST00000489728 ST20-MTHFSA0A0A6YYL1 179 aa15.6■□□□□ 0.09
CPSF7-212ENST00000489728 TESK2Q96S53 571 aa15.6■□□□□ 0.09
CPSF7-212ENST00000489728 BRD4O60885 1362 aaPredicted RBP15.6■□□□□ 0.09
CPSF7-212ENST00000489728 TRPM3Q9HCF6 1732 aaPredicted RBP15.6■□□□□ 0.09
CPSF7-212ENST00000489728 PPIP5K1Q6PFW1 1433 aa15.6■□□□□ 0.09
CPSF7-212ENST00000489728 DDX17Q92841 729 aaKnown RBP15.59■□□□□ 0.09
CPSF7-212ENST00000489728 TNS3Q68CZ2 1445 aa15.59■□□□□ 0.09
CPSF7-212ENST00000489728 KRT28Q7Z3Y7 464 aa15.58■□□□□ 0.08
CPSF7-212ENST00000489728 CABP2Q9NPB3 220 aa15.58■□□□□ 0.08
CPSF7-212ENST00000489728 ARHGEF10O15013 1369 aa15.58■□□□□ 0.08
CPSF7-212ENST00000489728 NINLQ9Y2I6 1382 aa15.58■□□□□ 0.08
CPSF7-212ENST00000489728 NGDNQ8NEJ9 315 aaKnown RBP15.57■□□□□ 0.08
CPSF7-212ENST00000489728 PMFBP1Q8TBY8 1022 aa15.57■□□□□ 0.08
CPSF7-212ENST00000489728 SPATA31A3Q5VYP0 1347 aa15.57■□□□□ 0.08
CPSF7-212ENST00000489728 ALS2Q96Q42 1657 aa15.56■□□□□ 0.08
CPSF7-212ENST00000489728 ACEP12821 1306 aa15.55■□□□□ 0.08
CPSF7-212ENST00000489728 EIF4G2P78344 907 aaKnown RBP eCLIP15.55■□□□□ 0.08
CPSF7-212ENST00000489728 TMF1P82094 1093 aa15.55■□□□□ 0.08
CPSF7-212ENST00000489728 CDCA8Q53HL2 280 aa15.55■□□□□ 0.08
CPSF7-212ENST00000489728 AKAP12Q02952 1782 aa15.54■□□□□ 0.08
CPSF7-212ENST00000489728 XPCQ01831 940 aaPredicted RBP15.53■□□□□ 0.08
CPSF7-212ENST00000489728 LRP6O75581 1613 aa15.53■□□□□ 0.08
CPSF7-212ENST00000489728 USP6P35125 1406 aa15.52■□□□□ 0.08
CPSF7-212ENST00000489728 CPSF1Q10570 1443 aaKnown RBP15.52■□□□□ 0.08
CPSF7-212ENST00000489728 ZNF692Q9BU19 519 aaPredicted RBP15.52■□□□□ 0.08
CPSF7-212ENST00000489728 CABP1Q9NZU7 370 aa15.52■□□□□ 0.08
CPSF7-212ENST00000489728 DISP3Q9P2K9 1392 aa15.51■□□□□ 0.07
CPSF7-212ENST00000489728 MON2Q7Z3U7 1717 aa15.51■□□□□ 0.07
CPSF7-212ENST00000489728 NRKQ7Z2Y5 1582 aa15.5■□□□□ 0.07
CPSF7-212ENST00000489728 ABCA3Q99758 1704 aa15.5■□□□□ 0.07
CPSF7-212ENST00000489728 SSH2Q76I76 1423 aa15.49■□□□□ 0.07
CPSF7-212ENST00000489728 MARF1Q9Y4F3 1742 aaKnown RBP15.48■□□□□ 0.07
CPSF7-212ENST00000489728 CRYBG1Q9Y4K1 1723 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 91.9 ms