RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 PRR20BP86481 221 aa8.11□□□□□ -1.11
CPSF3-205ENST00000489629 PRR20AP86496 221 aa8.11□□□□□ -1.11
CPSF3-205ENST00000489629 ZNF697Q5TEC3 545 aa8.11□□□□□ -1.11
CPSF3-205ENST00000489629 GIGYF2Q6Y7W6 1299 aaKnown RBP8.11□□□□□ -1.11
CPSF3-205ENST00000489629 AK7Q96M32 723 aa8.11□□□□□ -1.11
CPSF3-205ENST00000489629 USB1Q9BQ65 265 aaKnown RBP8.11□□□□□ -1.11
CPSF3-205ENST00000489629 GDF9O60383 454 aa8.1□□□□□ -1.11
CPSF3-205ENST00000489629 RPIAP49247 311 aa8.1□□□□□ -1.11
CPSF3-205ENST00000489629 TTLL12Q14166 644 aaPredicted RBP8.1□□□□□ -1.11
CPSF3-205ENST00000489629 NUTM1Q86Y26 1132 aa8.1□□□□□ -1.11
CPSF3-205ENST00000489629 PARP9Q8IXQ6 854 aa8.1□□□□□ -1.11
CPSF3-205ENST00000489629 SPIRE2Q8WWL2 714 aa8.1□□□□□ -1.11
CPSF3-205ENST00000489629 DXOO77932 396 aaKnown RBP8.08□□□□□ -1.12
CPSF3-205ENST00000489629 TRAF7Q6Q0C0 670 aa8.08□□□□□ -1.12
CPSF3-205ENST00000489629 SYMPKQ92797 1274 aaKnown RBP8.08□□□□□ -1.12
CPSF3-205ENST00000489629 PCDHGC3Q9UN70 934 aa8.08□□□□□ -1.12
CPSF3-205ENST00000489629 FDX1P10109 184 aa8.06□□□□□ -1.12
CPSF3-205ENST00000489629 MS4A1P11836 297 aa8.06□□□□□ -1.12
CPSF3-205ENST00000489629 BEGAINQ9BUH8 593 aa8.06□□□□□ -1.12
CPSF3-205ENST00000489629 SLC24A3Q9HC58 644 aa8.06□□□□□ -1.12
CPSF3-205ENST00000489629 PKD2L1Q9P0L9 805 aa8.06□□□□□ -1.12
CPSF3-205ENST00000489629 MOXD2PA6NHM9 499 aa8.05□□□□□ -1.12
CPSF3-205ENST00000489629 SLC24A1O60721 1099 aa8.05□□□□□ -1.12
CPSF3-205ENST00000489629 NDUFV2P19404 249 aa8.05□□□□□ -1.12
CPSF3-205ENST00000489629 TNFRSF10AO00220 468 aa8.04□□□□□ -1.12
CPSF3-205ENST00000489629 CD2BP2O95400 341 aaKnown RBP8.04□□□□□ -1.12
CPSF3-205ENST00000489629 JUNDP17535 347 aa8.04□□□□□ -1.12
CPSF3-205ENST00000489629 PDE4DQ08499 809 aa8.04□□□□□ -1.12
CPSF3-205ENST00000489629 RETREG3Q86VR2 466 aa8.04□□□□□ -1.12
CPSF3-205ENST00000489629 DGAT1O75907 488 aa8.02□□□□□ -1.13
CPSF3-205ENST00000489629 TBC1D2Q9BYX2 928 aa8.02□□□□□ -1.13
CPSF3-205ENST00000489629 ZBTB24O43167 697 aaPredicted RBP8.01□□□□□ -1.13
CPSF3-205ENST00000489629 GJA5P36382 358 aa8.01□□□□□ -1.13
CPSF3-205ENST00000489629 BCANQ96GW7 911 aa8.01□□□□□ -1.13
CPSF3-205ENST00000489629 C6orf229H3BNL8 230 aa8□□□□□ -1.13
CPSF3-205ENST00000489629 FOXC1Q12948 553 aa8□□□□□ -1.13
CPSF3-205ENST00000489629 TRIM32Q13049 653 aa8□□□□□ -1.13
CPSF3-205ENST00000489629 RSBN1LQ6PCB5 846 aaPredicted RBP8□□□□□ -1.13
CPSF3-205ENST00000489629 SPTLC1O15269 473 aa7.99□□□□□ -1.13
CPSF3-205ENST00000489629 DIXDC1Q155Q3 683 aa7.99□□□□□ -1.13
CPSF3-205ENST00000489629 TOR4AQ9NXH8 423 aa7.99□□□□□ -1.13
CPSF3-205ENST00000489629 MYT1Q01538 1121 aa7.98□□□□□ -1.13
CPSF3-205ENST00000489629 PKDCCQ504Y2 493 aa7.98□□□□□ -1.13
CPSF3-205ENST00000489629 CCDC24Q8N4L8 307 aa7.98□□□□□ -1.13
CPSF3-205ENST00000489629 PCDHB15Q9Y5E8 787 aa7.98□□□□□ -1.13
CPSF3-205ENST00000489629 FAM187AA6NFU0 413 aa7.97□□□□□ -1.13
CPSF3-205ENST00000489629 WNT7AO00755 349 aa7.97□□□□□ -1.13
CPSF3-205ENST00000489629 MTMR2Q13614 643 aa7.97□□□□□ -1.13
CPSF3-205ENST00000489629 PTCRAQ6ISU1 281 aaPredicted RBP7.97□□□□□ -1.13
CPSF3-205ENST00000489629 NUDT12Q9BQG2 462 aa7.97□□□□□ -1.13
CPSF3-205ENST00000489629 SPDYE5A6NIY4 337 aa7.96□□□□□ -1.14
CPSF3-205ENST00000489629 PRR7Q8TB68 274 aa7.96□□□□□ -1.14
CPSF3-205ENST00000489629 SKOR1P84550 965 aa7.95□□□□□ -1.14
CPSF3-205ENST00000489629 DESI1Q6ICB0 168 aa7.95□□□□□ -1.14
CPSF3-205ENST00000489629 RIC3Q7Z5B4 369 aa7.95□□□□□ -1.14
CPSF3-205ENST00000489629 PTPRNQ16849 979 aa7.94□□□□□ -1.14
CPSF3-205ENST00000489629 MYSM1Q5VVJ2 828 aa7.94□□□□□ -1.14
CPSF3-205ENST00000489629 CYP4X1Q8N118 509 aa7.94□□□□□ -1.14
CPSF3-205ENST00000489629 AVPP01185 164 aa7.93□□□□□ -1.14
CPSF3-205ENST00000489629 CCNYL3P0C7X3 344 aa7.93□□□□□ -1.14
CPSF3-205ENST00000489629 HRCP23327 699 aa7.93□□□□□ -1.14
CPSF3-205ENST00000489629 WNT7BP56706 349 aa7.93□□□□□ -1.14
CPSF3-205ENST00000489629 TUSC1Q2TAM9 212 aa7.93□□□□□ -1.14
CPSF3-205ENST00000489629 PRPF38BQ5VTL8 546 aaKnown RBP7.93□□□□□ -1.14
CPSF3-205ENST00000489629 MRGPRX2Q96LB1 330 aa7.93□□□□□ -1.14
CPSF3-205ENST00000489629 EVA1BQ9NVM1 165 aa7.93□□□□□ -1.14
CPSF3-205ENST00000489629 LIMD1Q9UGP4 676 aa7.93□□□□□ -1.14
CPSF3-205ENST00000489629 CFAP99D6REC4 459 aa7.92□□□□□ -1.14
CPSF3-205ENST00000489629 SNIP1Q8TAD8 396 aaKnown RBP7.92□□□□□ -1.14
CPSF3-205ENST00000489629 RC3H1Q5TC82 1133 aaKnown RBP7.91□□□□□ -1.14
CPSF3-205ENST00000489629 CABLES1Q8TDN4 633 aa7.91□□□□□ -1.14
CPSF3-205ENST00000489629 ZBTB3Q9H5J0 574 aa7.91□□□□□ -1.14
CPSF3-205ENST00000489629 AAASQ9NRG9 546 aa7.91□□□□□ -1.14
CPSF3-205ENST00000489629 SMPD1P17405 629 aa7.9□□□□□ -1.14
CPSF3-205ENST00000489629 KCNH2Q12809 1159 aa7.9□□□□□ -1.14
CPSF3-205ENST00000489629 LYPD8Q6UX82 237 aa7.9□□□□□ -1.14
CPSF3-205ENST00000489629 CRIPAKQ8N1N5 446 aa7.9□□□□□ -1.14
CPSF3-205ENST00000489629 TTC24A2A3L6 582 aaPredicted RBP7.89□□□□□ -1.15
CPSF3-205ENST00000489629 ST8SIA5O15466 376 aa7.89□□□□□ -1.15
CPSF3-205ENST00000489629 LILRB3O75022 631 aa7.89□□□□□ -1.15
CPSF3-205ENST00000489629 ZNF787Q6DD87 383 aa7.89□□□□□ -1.15
CPSF3-205ENST00000489629 UNC93B1Q9H1C4 597 aa7.89□□□□□ -1.15
CPSF3-205ENST00000489629 J3QL48 77 aa7.88□□□□□ -1.15
CPSF3-205ENST00000489629 SH3BP2P78314 561 aa7.88□□□□□ -1.15
CPSF3-205ENST00000489629 QPCTQ16769 361 aa7.88□□□□□ -1.15
CPSF3-205ENST00000489629 CSPP1Q1MSJ5 1256 aa7.88□□□□□ -1.15
CPSF3-205ENST00000489629 GPBP1L1Q9HC44 474 aaPredicted RBP7.88□□□□□ -1.15
CPSF3-205ENST00000489629 SIAH2O43255 324 aa7.87□□□□□ -1.15
CPSF3-205ENST00000489629 SMCPP49901 116 aaPredicted RBP7.87□□□□□ -1.15
CPSF3-205ENST00000489629 POTECB2RU33 542 aa7.86□□□□□ -1.15
CPSF3-205ENST00000489629 F12P00748 615 aaPredicted RBP7.86□□□□□ -1.15
CPSF3-205ENST00000489629 CLK2P49760 499 aaKnown RBP7.86□□□□□ -1.15
CPSF3-205ENST00000489629 BAP1Q92560 729 aa7.86□□□□□ -1.15
CPSF3-205ENST00000489629 RSPH6AQ9H0K4 717 aa7.86□□□□□ -1.15
CPSF3-205ENST00000489629 KDM4CQ9H3R0 1056 aa7.86□□□□□ -1.15
CPSF3-205ENST00000489629 DACH1Q9UI36 760 aa7.86□□□□□ -1.15
CPSF3-205ENST00000489629 CTC1Q2NKJ3 1217 aa7.85□□□□□ -1.15
CPSF3-205ENST00000489629 RTL5Q5HYW3 569 aaPredicted RBP7.85□□□□□ -1.15
CPSF3-205ENST00000489629 PER1O15534 1290 aaPredicted RBP7.84□□□□□ -1.15
CPSF3-205ENST00000489629 FAM117AQ9C073 453 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms