RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 XIRP1Q702N8 1843 aaKnown RBP19.46■□□□□ 0.71
C9orf3-221ENST00000489562 PLEKHH1Q9ULM0 1364 aa19.46■□□□□ 0.71
C9orf3-221ENST00000489562 LTBP4Q8N2S1 1624 aa19.45■□□□□ 0.7
C9orf3-221ENST00000489562 TESK2Q96S53 571 aa19.45■□□□□ 0.7
C9orf3-221ENST00000489562 ADGRL3Q9HAR2 1447 aa19.44■□□□□ 0.7
C9orf3-221ENST00000489562 LRRC7Q96NW7 1537 aa19.44■□□□□ 0.7
C9orf3-221ENST00000489562 SAFB2Q14151 953 aaKnown RBP eCLIP19.43■□□□□ 0.7
C9orf3-221ENST00000489562 CDC42BPGQ6DT37 1551 aa19.43■□□□□ 0.7
C9orf3-221ENST00000489562 TMF1P82094 1093 aa19.42■□□□□ 0.7
C9orf3-221ENST00000489562 TMEM94Q12767 1356 aa19.42■□□□□ 0.7
C9orf3-221ENST00000489562 EVC2Q86UK5 1308 aa19.41■□□□□ 0.7
C9orf3-221ENST00000489562 MINK1Q8N4C8 1332 aaPredicted RBP19.41■□□□□ 0.7
C9orf3-221ENST00000489562 TULP4Q9NRJ4 1543 aa19.41■□□□□ 0.7
C9orf3-221ENST00000489562 CDCA8Q53HL2 280 aa19.4■□□□□ 0.7
C9orf3-221ENST00000489562 HIRIP3Q9BW71 556 aaPredicted RBP19.4■□□□□ 0.7
C9orf3-221ENST00000489562 C14orf37Q86TY3 774 aa19.39■□□□□ 0.69
C9orf3-221ENST00000489562 DCCP43146 1447 aa19.39■□□□□ 0.69
C9orf3-221ENST00000489562 FMN2Q9NZ56 1722 aa19.39■□□□□ 0.69
C9orf3-221ENST00000489562 MSH6P52701 1360 aa19.37■□□□□ 0.69
C9orf3-221ENST00000489562 PUS7Q96PZ0 661 aaKnown RBP19.37■□□□□ 0.69
C9orf3-221ENST00000489562 DISP3Q9P2K9 1392 aa19.36■□□□□ 0.69
C9orf3-221ENST00000489562 WASLO00401 505 aaPredicted RBP19.36■□□□□ 0.69
C9orf3-221ENST00000489562 FBXO41Q8TF61 875 aa19.36■□□□□ 0.69
C9orf3-221ENST00000489562 C19orf44Q9H6X5 657 aa19.36■□□□□ 0.69
C9orf3-221ENST00000489562 ITSN1Q15811 1721 aa19.36■□□□□ 0.69
C9orf3-221ENST00000489562 ZNF316A6NFI3 1004 aaPredicted RBP19.35■□□□□ 0.69
C9orf3-221ENST00000489562 IQSEC2Q5JU85 1478 aa19.34■□□□□ 0.69
C9orf3-221ENST00000489562 RBM33Q96EV2 1170 aaKnown RBP19.33■□□□□ 0.68
C9orf3-221ENST00000489562 CDK19Q9BWU1 502 aa19.33■□□□□ 0.68
C9orf3-221ENST00000489562 ANKARQ7Z5J8 1434 aa19.33■□□□□ 0.68
C9orf3-221ENST00000489562 ATAD2Q6PL18 1390 aa19.32■□□□□ 0.68
C9orf3-221ENST00000489562 SRPK2P78362 688 aaKnown RBP19.32■□□□□ 0.68
C9orf3-221ENST00000489562 RGPD8O14715 1765 aaPredicted RBP19.32■□□□□ 0.68
C9orf3-221ENST00000489562 TOPAZ1Q8N9V7 1692 aa19.31■□□□□ 0.68
C9orf3-221ENST00000489562 CADPS2Q86UW7 1296 aa19.31■□□□□ 0.68
C9orf3-221ENST00000489562 CCDC7Q96M83 1385 aa19.31■□□□□ 0.68
C9orf3-221ENST00000489562 KIF7Q2M1P5 1343 aa19.3■□□□□ 0.68
C9orf3-221ENST00000489562 USP32Q8NFA0 1604 aa19.3■□□□□ 0.68
C9orf3-221ENST00000489562 ATF3P18847 181 aa19.3■□□□□ 0.68
C9orf3-221ENST00000489562 NINLQ9Y2I6 1382 aa19.3■□□□□ 0.68
C9orf3-221ENST00000489562 ATP7BP35670 1465 aa19.29■□□□□ 0.68
C9orf3-221ENST00000489562 MYOM1P52179 1685 aa19.29■□□□□ 0.68
C9orf3-221ENST00000489562 C11orf95C9JLR9 678 aaPredicted RBP19.28■□□□□ 0.68
C9orf3-221ENST00000489562 WASHC2AQ641Q2 1341 aa19.27■□□□□ 0.68
C9orf3-221ENST00000489562 CABP2Q9NPB3 220 aa19.27■□□□□ 0.68
C9orf3-221ENST00000489562 MST1RQ04912 1400 aa19.25■□□□□ 0.67
C9orf3-221ENST00000489562 KIF1AQ12756 1690 aa19.25■□□□□ 0.67
C9orf3-221ENST00000489562 NUDT16Q96DE0 195 aaKnown RBP19.25■□□□□ 0.67
C9orf3-221ENST00000489562 CCDC61Q9Y6R9 512 aa19.25■□□□□ 0.67
C9orf3-221ENST00000489562 PRR36Q9H6K5 1346 aa19.24■□□□□ 0.67
C9orf3-221ENST00000489562 C1orf167Q5SNV9 1468 aa19.23■□□□□ 0.67
C9orf3-221ENST00000489562 POLR3GLQ9BT43 218 aa19.23■□□□□ 0.67
C9orf3-221ENST00000489562 PPIP5K1Q6PFW1 1433 aa19.23■□□□□ 0.67
C9orf3-221ENST00000489562 AKAP12Q02952 1782 aa19.22■□□□□ 0.67
C9orf3-221ENST00000489562 CERKQ8TCT0 537 aa19.21■□□□□ 0.67
C9orf3-221ENST00000489562 NUTM2FA1L443 756 aa19.2■□□□□ 0.66
C9orf3-221ENST00000489562 PLEKHG3A1L390 1219 aa19.19■□□□□ 0.66
C9orf3-221ENST00000489562 TMC1Q8TDI8 760 aa19.19■□□□□ 0.66
C9orf3-221ENST00000489562 MON2Q7Z3U7 1717 aa19.18■□□□□ 0.66
C9orf3-221ENST00000489562 SLAIN2Q9P270 581 aa19.18■□□□□ 0.66
C9orf3-221ENST00000489562 TOM1O60784 492 aa19.17■□□□□ 0.66
C9orf3-221ENST00000489562 TERF2IPQ9NYB0 399 aa19.17■□□□□ 0.66
C9orf3-221ENST00000489562 CABP1Q9NZU7 370 aa19.17■□□□□ 0.66
C9orf3-221ENST00000489562 ANKRD36BQ8N2N9 1353 aa19.17■□□□□ 0.66
C9orf3-221ENST00000489562 ESCO1Q5FWF5 840 aa19.16■□□□□ 0.66
C9orf3-221ENST00000489562 SLC12A5Q9H2X9 1139 aa19.16■□□□□ 0.66
C9orf3-221ENST00000489562 PHF8Q9UPP1 1060 aa19.16■□□□□ 0.66
C9orf3-221ENST00000489562 POLR3AO14802 1390 aaPredicted RBP19.16■□□□□ 0.66
C9orf3-221ENST00000489562 HDGFL2Q7Z4V5 671 aaPredicted RBP19.15■□□□□ 0.66
C9orf3-221ENST00000489562 ZNF692Q9BU19 519 aaPredicted RBP19.14■□□□□ 0.65
C9orf3-221ENST00000489562 CPSF1Q10570 1443 aaKnown RBP19.14■□□□□ 0.65
C9orf3-221ENST00000489562 CD163L1Q9NR16 1453 aa19.14■□□□□ 0.65
C9orf3-221ENST00000489562 ROBO1Q9Y6N7 1651 aa19.14■□□□□ 0.65
C9orf3-221ENST00000489562 NHSL1Q5SYE7 1610 aa19.12■□□□□ 0.65
C9orf3-221ENST00000489562 A0A1W2PP64 1363 aa19.12■□□□□ 0.65
C9orf3-221ENST00000489562 BRD4O60885 1362 aaPredicted RBP19.12■□□□□ 0.65
C9orf3-221ENST00000489562 ACEP12821 1306 aa19.12■□□□□ 0.65
C9orf3-221ENST00000489562 NGDNQ8NEJ9 315 aaKnown RBP19.12■□□□□ 0.65
C9orf3-221ENST00000489562 ORAI2Q96SN7 254 aa19.12■□□□□ 0.65
C9orf3-221ENST00000489562 NRKQ7Z2Y5 1582 aa19.11■□□□□ 0.65
C9orf3-221ENST00000489562 DDX10Q13206 875 aaKnown RBP19.11■□□□□ 0.65
C9orf3-221ENST00000489562 PMFBP1Q8TBY8 1022 aa19.11■□□□□ 0.65
C9orf3-221ENST00000489562 KTN1Q86UP2 1357 aaKnown RBP19.1■□□□□ 0.65
C9orf3-221ENST00000489562 UBAP1LF5GYI3 381 aa19.1■□□□□ 0.65
C9orf3-221ENST00000489562 BRINP3Q76B58 766 aa19.1■□□□□ 0.65
C9orf3-221ENST00000489562 PANK3Q9H999 370 aa19.1■□□□□ 0.65
C9orf3-221ENST00000489562 USP6P35125 1406 aa19.09■□□□□ 0.65
C9orf3-221ENST00000489562 EDC4Q6P2E9 1401 aaKnown RBP19.09■□□□□ 0.65
C9orf3-221ENST00000489562 NPHP3Q7Z494 1330 aa19.09■□□□□ 0.65
C9orf3-221ENST00000489562 KIF20BQ96Q89 1820 aa19.08■□□□□ 0.64
C9orf3-221ENST00000489562 AHDC1Q5TGY3 1603 aaPredicted RBP19.07■□□□□ 0.64
C9orf3-221ENST00000489562 TRPM3Q9HCF6 1732 aaPredicted RBP19.07■□□□□ 0.64
C9orf3-221ENST00000489562 NSD3Q9BZ95 1437 aa19.06■□□□□ 0.64
C9orf3-221ENST00000489562 FOXO3O43524 673 aa19.05■□□□□ 0.64
C9orf3-221ENST00000489562 PSME1Q06323 249 aa19.05■□□□□ 0.64
C9orf3-221ENST00000489562 KNSTRNQ9Y448 316 aa19.05■□□□□ 0.64
C9orf3-221ENST00000489562 SSH2Q76I76 1423 aa19.04■□□□□ 0.64
C9orf3-221ENST00000489562 CARD14Q9BXL6 1004 aa19.04■□□□□ 0.64
C9orf3-221ENST00000489562 ANKRD26Q9UPS8 1709 aa19.04■□□□□ 0.64
C9orf3-221ENST00000489562 PXDNQ92626 1479 aa19.03■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms