RNA–Protein interactions for RNA: ENST00000489559.1

ACAA1-218, Transcript of acetyl-CoA acyltransferase 1, human

TSL 4

Gene ACAA1, Length 579 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ACAA1-218	ENST00000489559	PLEKHH1	Q9ULM0	1364 aa		32.44	■■■□□ 2.78
ACAA1-218	ENST00000489559	JCAD	Q9P266	1359 aa		32.41	■■■□□ 2.78
ACAA1-218	ENST00000489559	DLC1	Q96QB1	1528 aa		32.41	■■■□□ 2.78
ACAA1-218	ENST00000489559	SHPRH	Q149N8	1683 aa		32.36	■■■□□ 2.77
ACAA1-218	ENST00000489559	KIAA1210	Q9ULL0	1709 aa		32.35	■■■□□ 2.77
ACAA1-218	ENST00000489559	FMN2	Q9NZ56	1722 aa		32.34	■■■□□ 2.77
ACAA1-218	ENST00000489559	PHF23	Q9BUL5	403 aa	Predicted RBP	32.33	■■■□□ 2.77
ACAA1-218	ENST00000489559	PRAM1	Q96QH2	718 aa		32.32	■■■□□ 2.76
ACAA1-218	ENST00000489559	ORAI2	Q96SN7	254 aa		32.32	■■■□□ 2.76
ACAA1-218	ENST00000489559	ILDR2	Q71H61	639 aa		32.31	■■■□□ 2.76
ACAA1-218	ENST00000489559	SIN3A	Q96ST3	1273 aa		32.3	■■■□□ 2.76
ACAA1-218	ENST00000489559	TRAK1	Q9UPV9	953 aa		32.3	■■■□□ 2.76
ACAA1-218	ENST00000489559	POGK	Q9P215	609 aa		32.29	■■■□□ 2.76
ACAA1-218	ENST00000489559	DDX17	Q92841	729 aa	Known RBP	32.28	■■■□□ 2.76
ACAA1-218	ENST00000489559	SAFB2	Q14151	953 aa	Known RBP eCLIP	32.27	■■■□□ 2.76
ACAA1-218	ENST00000489559	SPATA31A6	Q5VVP1	1343 aa		32.26	■■■□□ 2.76
ACAA1-218	ENST00000489559	ARHGEF28	Q8N1W1	1705 aa	Known RBP	32.26	■■■□□ 2.76
ACAA1-218	ENST00000489559	ADGRB2	O60241	1585 aa		32.25	■■■□□ 2.75
ACAA1-218	ENST00000489559	ESCO1	Q5FWF5	840 aa		32.25	■■■□□ 2.75
ACAA1-218	ENST00000489559	LRRC59	Q96AG4	307 aa	Known RBP	32.25	■■■□□ 2.75
ACAA1-218	ENST00000489559	NUTM2F	A1L443	756 aa		32.24	■■■□□ 2.75
ACAA1-218	ENST00000489559	NEUROD1	Q13562	356 aa		32.24	■■■□□ 2.75
ACAA1-218	ENST00000489559	L3MBTL2	Q969R5	705 aa		32.24	■■■□□ 2.75
ACAA1-218	ENST00000489559	RGPD8	O14715	1765 aa	Predicted RBP	32.22	■■■□□ 2.75
ACAA1-218	ENST00000489559	KIF1A	Q12756	1690 aa		32.21	■■■□□ 2.75
ACAA1-218	ENST00000489559	SOS2	Q07890	1332 aa	Predicted RBP	32.2	■■■□□ 2.74
ACAA1-218	ENST00000489559	LRP6	O75581	1613 aa		32.18	■■■□□ 2.74
ACAA1-218	ENST00000489559	NPHP3	Q7Z494	1330 aa		32.18	■■■□□ 2.74
ACAA1-218	ENST00000489559	PNPLA6	Q8IY17	1366 aa		32.16	■■■□□ 2.74
ACAA1-218	ENST00000489559	NBPF1	Q3BBV0	1214 aa		32.14	■■■□□ 2.74
ACAA1-218	ENST00000489559	RGS17	Q9UGC6	210 aa	Predicted RBP	32.14	■■■□□ 2.74
ACAA1-218	ENST00000489559	MINK1	Q8N4C8	1332 aa	Predicted RBP	32.14	■■■□□ 2.74
ACAA1-218	ENST00000489559	USP32	Q8NFA0	1604 aa		32.13	■■■□□ 2.73
ACAA1-218	ENST00000489559	PXDN	Q92626	1479 aa		32.13	■■■□□ 2.73
ACAA1-218	ENST00000489559	TRPM1	Q7Z4N2	1603 aa		32.12	■■■□□ 2.73
ACAA1-218	ENST00000489559	ANKAR	Q7Z5J8	1434 aa		32.12	■■■□□ 2.73
ACAA1-218	ENST00000489559	FOXO3	O43524	673 aa		32.12	■■■□□ 2.73
ACAA1-218	ENST00000489559	HIRIP3	Q9BW71	556 aa	Predicted RBP	32.12	■■■□□ 2.73
ACAA1-218	ENST00000489559	MEX3C	Q5U5Q3	659 aa	Known RBP	32.1	■■■□□ 2.73
ACAA1-218	ENST00000489559	EIF3A	Q14152	1382 aa	Known RBP	32.09	■■■□□ 2.73
ACAA1-218	ENST00000489559	NUTM2B	A6NNL0	878 aa	Predicted RBP	32.09	■■■□□ 2.73
ACAA1-218	ENST00000489559	NUTM2E	B1AL46	878 aa	Predicted RBP	32.09	■■■□□ 2.73
ACAA1-218	ENST00000489559	NUTM2A	Q8IVF1	878 aa	Predicted RBP	32.09	■■■□□ 2.73
ACAA1-218	ENST00000489559	TULP4	Q9NRJ4	1543 aa		32.07	■■■□□ 2.72
ACAA1-218	ENST00000489559	PHF8	Q9UPP1	1060 aa		32.07	■■■□□ 2.72
ACAA1-218	ENST00000489559	COL22A1	Q8NFW1	1626 aa	Predicted RBP	32.07	■■■□□ 2.72
ACAA1-218	ENST00000489559	WASL	O00401	505 aa	Predicted RBP	32.06	■■■□□ 2.72
ACAA1-218	ENST00000489559	XPC	Q01831	940 aa	Predicted RBP	32.05	■■■□□ 2.72
ACAA1-218	ENST00000489559	SOCS7	O14512	581 aa		32.01	■■■□□ 2.71
ACAA1-218	ENST00000489559	TONSL	Q96HA7	1378 aa		32.01	■■■□□ 2.71
ACAA1-218	ENST00000489559	ITSN1	Q15811	1721 aa		32	■■■□□ 2.71
ACAA1-218	ENST00000489559	PRR36	Q9H6K5	1346 aa		32	■■■□□ 2.71
ACAA1-218	ENST00000489559	POTEA	Q6S8J7	498 aa		31.99	■■■□□ 2.71
ACAA1-218	ENST00000489559	KRT28	Q7Z3Y7	464 aa		31.99	■■■□□ 2.71
ACAA1-218	ENST00000489559	QRICH2	Q9H0J4	1663 aa		31.98	■■■□□ 2.71
ACAA1-218	ENST00000489559	CENPJ	Q9HC77	1338 aa	Predicted RBP	31.97	■■■□□ 2.71
ACAA1-218	ENST00000489559	ROCK2	O75116	1388 aa	Known RBP	31.96	■■■□□ 2.71
ACAA1-218	ENST00000489559	PMFBP1	Q8TBY8	1022 aa		31.96	■■■□□ 2.71
ACAA1-218	ENST00000489559	NBPF8	Q3BBV2	869 aa		31.95	■■■□□ 2.71
ACAA1-218	ENST00000489559	ATP7B	P35670	1465 aa		31.95	■■■□□ 2.7
ACAA1-218	ENST00000489559	SPATA31A3	Q5VYP0	1347 aa		31.95	■■■□□ 2.7
ACAA1-218	ENST00000489559	PSME1	Q06323	249 aa		31.94	■■■□□ 2.7
ACAA1-218	ENST00000489559	ZNF772	Q68DY9	489 aa	Predicted RBP	31.93	■■■□□ 2.7
ACAA1-218	ENST00000489559	CDK19	Q9BWU1	502 aa		31.92	■■■□□ 2.7
ACAA1-218	ENST00000489559	TNS3	Q68CZ2	1445 aa		31.92	■■■□□ 2.7
ACAA1-218	ENST00000489559	SBNO1	A3KN83	1393 aa		31.91	■■■□□ 2.7
ACAA1-218	ENST00000489559	TOPAZ1	Q8N9V7	1692 aa		31.9	■■■□□ 2.7
ACAA1-218	ENST00000489559	MARF1	Q9Y4F3	1742 aa	Known RBP	31.9	■■■□□ 2.7
ACAA1-218	ENST00000489559	ADAMTS2	O95450	1211 aa		31.9	■■■□□ 2.7
ACAA1-218	ENST00000489559	NUDT16	Q96DE0	195 aa	Known RBP	31.9	■■■□□ 2.7
ACAA1-218	ENST00000489559	C8orf37	Q96NL8	207 aa		31.9	■■■□□ 2.7
ACAA1-218	ENST00000489559	PCGF6	Q9BYE7	350 aa		31.9	■■■□□ 2.7
ACAA1-218	ENST00000489559	TRPM3	Q9HCF6	1732 aa	Predicted RBP	31.89	■■■□□ 2.7
ACAA1-218	ENST00000489559	AFF2	P51816	1311 aa		31.89	■■■□□ 2.7
ACAA1-218	ENST00000489559	GPRASP1	Q5JY77	1395 aa		31.89	■■■□□ 2.7
ACAA1-218	ENST00000489559	RALGAPB	Q86X10	1494 aa		31.85	■■■□□ 2.69
ACAA1-218	ENST00000489559	NGDN	Q8NEJ9	315 aa	Known RBP	31.84	■■■□□ 2.69
ACAA1-218	ENST00000489559	ARHGEF10	O15013	1369 aa		31.83	■■■□□ 2.69
ACAA1-218	ENST00000489559	NGLY1	Q96IV0	654 aa		31.83	■■■□□ 2.69
ACAA1-218	ENST00000489559	CCDC61	Q9Y6R9	512 aa		31.82	■■■□□ 2.68
ACAA1-218	ENST00000489559	ALS2	Q96Q42	1657 aa		31.82	■■■□□ 2.68
ACAA1-218	ENST00000489559	SRPK2	P78362	688 aa	Known RBP	31.8	■■■□□ 2.68
ACAA1-218	ENST00000489559	ABCA3	Q99758	1704 aa		31.8	■■■□□ 2.68
ACAA1-218	ENST00000489559	LMOD2	Q6P5Q4	547 aa		31.79	■■■□□ 2.68
ACAA1-218	ENST00000489559	CARD11	Q9BXL7	1154 aa		31.78	■■■□□ 2.68
ACAA1-218	ENST00000489559	CABP2	Q9NPB3	220 aa		31.76	■■■□□ 2.67
ACAA1-218	ENST00000489559	POLR3A	O14802	1390 aa	Predicted RBP	31.76	■■■□□ 2.67
ACAA1-218	ENST00000489559	CLSPN	Q9HAW4	1339 aa		31.75	■■■□□ 2.67
ACAA1-218	ENST00000489559	PLEKHG3	A1L390	1219 aa		31.75	■■■□□ 2.67
ACAA1-218	ENST00000489559	EVC2	Q86UK5	1308 aa		31.75	■■■□□ 2.67
ACAA1-218	ENST00000489559	FNBP4	Q8N3X1	1017 aa	Predicted RBP	31.74	■■■□□ 2.67
ACAA1-218	ENST00000489559	PPIP5K1	Q6PFW1	1433 aa		31.74	■■■□□ 2.67
ACAA1-218	ENST00000489559	HAP1	P54257	671 aa	Predicted RBP	31.73	■■■□□ 2.67
ACAA1-218	ENST00000489559	ACE	P12821	1306 aa		31.73	■■■□□ 2.67
ACAA1-218	ENST00000489559	RXRB	P28702	533 aa		31.72	■■■□□ 2.67
ACAA1-218	ENST00000489559	CABLES1	Q8TDN4	633 aa		31.72	■■■□□ 2.67
ACAA1-218	ENST00000489559	USP21	Q9UK80	565 aa		31.72	■■■□□ 2.67
ACAA1-218	ENST00000489559	QTRT2	Q9H974	415 aa	Known RBP	31.71	■■■□□ 2.67
ACAA1-218	ENST00000489559	PAK3	O75914	559 aa	Predicted RBP	31.7	■■■□□ 2.67
ACAA1-218	ENST00000489559	SBNO2	Q9Y2G9	1366 aa		31.69	■■■□□ 2.66

Retrieved 100 of 20,778 RNA–protein pairs in 116.4 ms