RNA–Protein interactions for RNA: ENST00000488908.1

CCDC93-209, Transcript of coiled-coil domain containing 93, humanhuman

TSL 5

Gene CCDC93, Length 268 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC93-209ENST00000488908 Q3C1V9 767 aa8.48□□□□□ -1.05
CCDC93-209ENST00000488908 C11orf95C9JLR9 678 aaPredicted RBP8.47□□□□□ -1.05
CCDC93-209ENST00000488908 GMPR2Q9P2T1 348 aaKnown RBP8.47□□□□□ -1.05
CCDC93-209ENST00000488908 WNT7AO00755 349 aa8.46□□□□□ -1.06
CCDC93-209ENST00000488908 LCE2AQ5TA79 106 aaPredicted RBP8.46□□□□□ -1.06
CCDC93-209ENST00000488908 TRIM32Q13049 653 aa8.45□□□□□ -1.06
CCDC93-209ENST00000488908 SNIP1Q8TAD8 396 aaKnown RBP8.45□□□□□ -1.06
CCDC93-209ENST00000488908 MMP16P51512 607 aa8.44□□□□□ -1.06
CCDC93-209ENST00000488908 PLCB2Q00722 1185 aa8.44□□□□□ -1.06
CCDC93-209ENST00000488908 CD46P15529 392 aa8.43□□□□□ -1.06
CCDC93-209ENST00000488908 WFS1O76024 890 aa8.42□□□□□ -1.06
CCDC93-209ENST00000488908 USB1Q9BQ65 265 aaKnown RBP8.42□□□□□ -1.06
CCDC93-209ENST00000488908 KDM4AO75164 1064 aa8.41□□□□□ -1.06
CCDC93-209ENST00000488908 SMPD1P17405 629 aa8.41□□□□□ -1.06
CCDC93-209ENST00000488908 MRGPRX2Q96LB1 330 aa8.41□□□□□ -1.06
CCDC93-209ENST00000488908 REPIN1Q9BWE0 567 aaKnown RBP8.41□□□□□ -1.06
CCDC93-209ENST00000488908 DXOO77932 396 aaKnown RBP8.4□□□□□ -1.06
CCDC93-209ENST00000488908 MAP2K5Q13163 448 aa8.4□□□□□ -1.06
CCDC93-209ENST00000488908 USP46P62068 366 aa8.39□□□□□ -1.07
CCDC93-209ENST00000488908 ATP13A2Q9NQ11 1180 aa8.39□□□□□ -1.07
CCDC93-209ENST00000488908 CCDC24Q8N4L8 307 aa8.38□□□□□ -1.07
CCDC93-209ENST00000488908 SENP2Q9HC62 589 aa8.38□□□□□ -1.07
CCDC93-209ENST00000488908 J3QL48 77 aa8.37□□□□□ -1.07
CCDC93-209ENST00000488908 NFX1Q12986 1120 aaKnown RBP8.37□□□□□ -1.07
CCDC93-209ENST00000488908 TULP1O00294 542 aaPredicted RBP8.36□□□□□ -1.07
CCDC93-209ENST00000488908 IRF6O14896 467 aa8.36□□□□□ -1.07
CCDC93-209ENST00000488908 WNT7BP56706 349 aa8.36□□□□□ -1.07
CCDC93-209ENST00000488908 MDM2Q00987 491 aaPredicted RBP8.36□□□□□ -1.07
CCDC93-209ENST00000488908 HOXA2O43364 376 aa8.35□□□□□ -1.07
CCDC93-209ENST00000488908 RC3H1Q5TC82 1133 aaKnown RBP8.35□□□□□ -1.07
CCDC93-209ENST00000488908 HLA-CQ95604 372 aa8.35□□□□□ -1.07
CCDC93-209ENST00000488908 TRIM47Q96LD4 638 aa8.35□□□□□ -1.07
CCDC93-209ENST00000488908 WIPF1O43516 503 aa8.34□□□□□ -1.07
CCDC93-209ENST00000488908 HPS1Q92902 700 aa8.34□□□□□ -1.07
CCDC93-209ENST00000488908 MINK1Q8N4C8 1332 aaPredicted RBP8.33□□□□□ -1.08
CCDC93-209ENST00000488908 SNRPBP14678 240 aaKnown RBP8.33□□□□□ -1.08
CCDC93-209ENST00000488908 INSM1Q01101 510 aaPredicted RBP8.33□□□□□ -1.08
CCDC93-209ENST00000488908 KIFC2Q96AC6 838 aa8.33□□□□□ -1.08
CCDC93-209ENST00000488908 STK17AQ9UEE5 414 aa8.33□□□□□ -1.08
CCDC93-209ENST00000488908 JUNDP17535 347 aa8.32□□□□□ -1.08
CCDC93-209ENST00000488908 SKOR1P84550 965 aa8.32□□□□□ -1.08
CCDC93-209ENST00000488908 TERTO14746 1132 aaKnown RBP8.31□□□□□ -1.08
CCDC93-209ENST00000488908 HAP1P54257 671 aaPredicted RBP8.31□□□□□ -1.08
CCDC93-209ENST00000488908 GPCPD1Q9NPB8 672 aa8.31□□□□□ -1.08
CCDC93-209ENST00000488908 ALDH1A1P00352 501 aa8.3□□□□□ -1.08
CCDC93-209ENST00000488908 CLCN1P35523 988 aa8.3□□□□□ -1.08
CCDC93-209ENST00000488908 GUCA2AQ02747 115 aa8.3□□□□□ -1.08
CCDC93-209ENST00000488908 CCDC102AQ96A19 550 aa8.29□□□□□ -1.08
CCDC93-209ENST00000488908 RETREG3Q86VR2 466 aa8.28□□□□□ -1.08
CCDC93-209ENST00000488908 NUTM1Q86Y26 1132 aa8.28□□□□□ -1.08
CCDC93-209ENST00000488908 SYMPKQ92797 1274 aaKnown RBP8.28□□□□□ -1.08
CCDC93-209ENST00000488908 NUDT12Q9BQG2 462 aa8.28□□□□□ -1.08
CCDC93-209ENST00000488908 FAM217BQ9NTX9 383 aaPredicted RBP8.28□□□□□ -1.08
CCDC93-209ENST00000488908 KRI1Q8N9T8 703 aaKnown RBP8.27□□□□□ -1.09
CCDC93-209ENST00000488908 EHBP1Q8NDI1 1231 aa8.27□□□□□ -1.09
CCDC93-209ENST00000488908 KDM2AQ9Y2K7 1162 aa8.27□□□□□ -1.09
CCDC93-209ENST00000488908 SLC16A10Q8TF71 515 aa8.25□□□□□ -1.09
CCDC93-209ENST00000488908 WASF2Q9Y6W5 498 aa8.25□□□□□ -1.09
CCDC93-209ENST00000488908 SIAH2O43255 324 aa8.24□□□□□ -1.09
CCDC93-209ENST00000488908 FDX1P10109 184 aa8.24□□□□□ -1.09
CCDC93-209ENST00000488908 LCE2CQ5TA81 110 aa8.24□□□□□ -1.09
CCDC93-209ENST00000488908 PTCRAQ6ISU1 281 aaPredicted RBP8.24□□□□□ -1.09
CCDC93-209ENST00000488908 C6orf229H3BNL8 230 aa8.23□□□□□ -1.09
CCDC93-209ENST00000488908 CCNYL3P0C7X3 344 aa8.23□□□□□ -1.09
CCDC93-209ENST00000488908 MS4A1P11836 297 aa8.23□□□□□ -1.09
CCDC93-209ENST00000488908 CAPN5O15484 640 aaPredicted RBP8.22□□□□□ -1.09
CCDC93-209ENST00000488908 NXF1Q9UBU9 619 aaKnown RBP8.22□□□□□ -1.09
CCDC93-209ENST00000488908 SH3BP2P78314 561 aa8.21□□□□□ -1.1
CCDC93-209ENST00000488908 PCDHGC3Q9UN70 934 aa8.21□□□□□ -1.1
CCDC93-209ENST00000488908 BMP1P13497 986 aa8.2□□□□□ -1.1
CCDC93-209ENST00000488908 PTPRNQ16849 979 aa8.2□□□□□ -1.1
CCDC93-209ENST00000488908 FAM181BA6NEQ2 426 aa8.19□□□□□ -1.1
CCDC93-209ENST00000488908 TRIM46Q7Z4K8 759 aa8.19□□□□□ -1.1
CCDC93-209ENST00000488908 NPAS3Q8IXF0 933 aa8.19□□□□□ -1.1
CCDC93-209ENST00000488908 UNC93B1Q9H1C4 597 aa8.19□□□□□ -1.1
CCDC93-209ENST00000488908 IRF7Q92985 503 aa8.18□□□□□ -1.1
CCDC93-209ENST00000488908 EVA1BQ9NVM1 165 aa8.18□□□□□ -1.1
CCDC93-209ENST00000488908 PLEKHG3A1L390 1219 aa8.17□□□□□ -1.1
CCDC93-209ENST00000488908 SSTR3P32745 418 aaPredicted RBP8.17□□□□□ -1.1
CCDC93-209ENST00000488908 SPIRE2Q8WWL2 714 aa8.17□□□□□ -1.1
CCDC93-209ENST00000488908 KCNH2Q12809 1159 aa8.16□□□□□ -1.1
CCDC93-209ENST00000488908 SPDYE5A6NIY4 337 aa8.15□□□□□ -1.1
CCDC93-209ENST00000488908 NDUFV2P19404 249 aa8.15□□□□□ -1.1
CCDC93-209ENST00000488908 VARSP26640 1264 aaKnown RBP8.15□□□□□ -1.1
CCDC93-209ENST00000488908 LINC01559Q495D7 138 aa8.15□□□□□ -1.1
CCDC93-209ENST00000488908 DESI1Q6ICB0 168 aa8.15□□□□□ -1.1
CCDC93-209ENST00000488908 VSIG10Q8N0Z9 540 aa8.15□□□□□ -1.1
CCDC93-209ENST00000488908 ZNF511Q8NB15 262 aa8.15□□□□□ -1.1
CCDC93-209ENST00000488908 PRR7Q8TB68 274 aa8.15□□□□□ -1.1
CCDC93-209ENST00000488908 BAP1Q92560 729 aa8.15□□□□□ -1.1
CCDC93-209ENST00000488908 TLL2Q9Y6L7 1015 aa8.15□□□□□ -1.1
CCDC93-209ENST00000488908 MOXD2PA6NHM9 499 aa8.14□□□□□ -1.11
CCDC93-209ENST00000488908 GMPRP36959 345 aa8.14□□□□□ -1.11
CCDC93-209ENST00000488908 MTMR2Q13614 643 aa8.14□□□□□ -1.11
CCDC93-209ENST00000488908 TTLL12Q14166 644 aaPredicted RBP8.14□□□□□ -1.11
CCDC93-209ENST00000488908 MPNDQ8N594 471 aa8.14□□□□□ -1.11
CCDC93-209ENST00000488908 ZFP42Q96MM3 310 aa8.14□□□□□ -1.11
CCDC93-209ENST00000488908 H3BM21 787 aa8.13□□□□□ -1.11
CCDC93-209ENST00000488908 NNTQ13423 1086 aa8.13□□□□□ -1.11
CCDC93-209ENST00000488908 VEGFBP49765 207 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 743 ms