RNA–Protein interactions for RNA: ENST00000479051.1

VARS-224, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 612 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-224ENST00000479051 PLEKHH1Q9ULM0 1364 aa29.34■■■□□ 2.29
VARS-224ENST00000479051 ROBO1Q9Y6N7 1651 aa29.33■■■□□ 2.29
VARS-224ENST00000479051 HSPA1LP34931 641 aa29.31■■■□□ 2.28
VARS-224ENST00000479051 CDC42BPGQ6DT37 1551 aa29.3■■■□□ 2.28
VARS-224ENST00000479051 MST1RQ04912 1400 aa29.3■■■□□ 2.28
VARS-224ENST00000479051 NBPF1Q3BBV0 1214 aa29.3■■■□□ 2.28
VARS-224ENST00000479051 SAFB2Q14151 953 aaKnown RBP eCLIP29.28■■■□□ 2.28
VARS-224ENST00000479051 TRPM1Q7Z4N2 1603 aa29.27■■■□□ 2.28
VARS-224ENST00000479051 ROCK2O75116 1388 aaKnown RBP29.26■■■□□ 2.27
VARS-224ENST00000479051 ARHGEF28Q8N1W1 1705 aaKnown RBP29.24■■■□□ 2.27
VARS-224ENST00000479051 TIMELESSQ9UNS1 1208 aa29.24■■■□□ 2.27
VARS-224ENST00000479051 C1orf167Q5SNV9 1468 aa29.23■■■□□ 2.27
VARS-224ENST00000479051 NBPF8Q3BBV2 869 aa29.22■■■□□ 2.27
VARS-224ENST00000479051 BRINP3Q76B58 766 aa29.22■■■□□ 2.27
VARS-224ENST00000479051 MINK1Q8N4C8 1332 aaPredicted RBP29.18■■■□□ 2.26
VARS-224ENST00000479051 ADGRB2O60241 1585 aa29.18■■■□□ 2.26
VARS-224ENST00000479051 PHLPP1O60346 1717 aa29.16■■■□□ 2.26
VARS-224ENST00000479051 FMN2Q9NZ56 1722 aa29.16■■■□□ 2.26
VARS-224ENST00000479051 RALGAPBQ86X10 1494 aa29.16■■■□□ 2.26
VARS-224ENST00000479051 EIF3AQ14152 1382 aaKnown RBP29.15■■■□□ 2.26
VARS-224ENST00000479051 HIRIP3Q9BW71 556 aaPredicted RBP29.15■■■□□ 2.26
VARS-224ENST00000479051 AHDC1Q5TGY3 1603 aaPredicted RBP29.15■■■□□ 2.26
VARS-224ENST00000479051 GPRASP1Q5JY77 1395 aa29.14■■■□□ 2.26
VARS-224ENST00000479051 NUTM2FA1L443 756 aa29.14■■■□□ 2.26
VARS-224ENST00000479051 CENPJQ9HC77 1338 aaPredicted RBP29.14■■■□□ 2.25
VARS-224ENST00000479051 ESCO1Q5FWF5 840 aa29.13■■■□□ 2.25
VARS-224ENST00000479051 ORAI2Q96SN7 254 aa29.12■■■□□ 2.25
VARS-224ENST00000479051 CARD11Q9BXL7 1154 aa29.12■■■□□ 2.25
VARS-224ENST00000479051 WASLO00401 505 aaPredicted RBP29.1■■■□□ 2.25
VARS-224ENST00000479051 ANKARQ7Z5J8 1434 aa29.09■■■□□ 2.25
VARS-224ENST00000479051 NHSL1Q5SYE7 1610 aa29.09■■■□□ 2.25
VARS-224ENST00000479051 COL16A1Q07092 1604 aaPredicted RBP29.07■■■□□ 2.24
VARS-224ENST00000479051 NPHP3Q7Z494 1330 aa29.05■■■□□ 2.24
VARS-224ENST00000479051 QRICH2Q9H0J4 1663 aa29.05■■■□□ 2.24
VARS-224ENST00000479051 TULP4Q9NRJ4 1543 aa29.04■■■□□ 2.24
VARS-224ENST00000479051 KIF1AQ12756 1690 aa29.04■■■□□ 2.24
VARS-224ENST00000479051 JCADQ9P266 1359 aa29.03■■■□□ 2.24
VARS-224ENST00000479051 DDX17Q92841 729 aaKnown RBP29.01■■■□□ 2.23
VARS-224ENST00000479051 LRRC59Q96AG4 307 aaKnown RBP29.01■■■□□ 2.23
VARS-224ENST00000479051 CDK19Q9BWU1 502 aa29.01■■■□□ 2.23
VARS-224ENST00000479051 PHF8Q9UPP1 1060 aa29.01■■■□□ 2.23
VARS-224ENST00000479051 FOXO3O43524 673 aa28.99■■■□□ 2.23
VARS-224ENST00000479051 RGPD8O14715 1765 aaPredicted RBP28.98■■■□□ 2.23
VARS-224ENST00000479051 USP32Q8NFA0 1604 aa28.98■■■□□ 2.23
VARS-224ENST00000479051 SOS2Q07890 1332 aaPredicted RBP28.97■■■□□ 2.23
VARS-224ENST00000479051 SRPK2P78362 688 aaKnown RBP28.96■■■□□ 2.23
VARS-224ENST00000479051 EVC2Q86UK5 1308 aa28.95■■■□□ 2.23
VARS-224ENST00000479051 PRR36Q9H6K5 1346 aa28.95■■■□□ 2.23
VARS-224ENST00000479051 NUDT16Q96DE0 195 aaKnown RBP28.95■■■□□ 2.22
VARS-224ENST00000479051 ATP7BP35670 1465 aa28.94■■■□□ 2.22
VARS-224ENST00000479051 ITSN1Q15811 1721 aa28.94■■■□□ 2.22
VARS-224ENST00000479051 SBNO2Q9Y2G9 1366 aa28.93■■■□□ 2.22
VARS-224ENST00000479051 PMFBP1Q8TBY8 1022 aa28.92■■■□□ 2.22
VARS-224ENST00000479051 SHPRHQ149N8 1683 aa28.92■■■□□ 2.22
VARS-224ENST00000479051 SPATA31A6Q5VVP1 1343 aa28.92■■■□□ 2.22
VARS-224ENST00000479051 PXDNQ92626 1479 aa28.91■■■□□ 2.22
VARS-224ENST00000479051 PSME1Q06323 249 aa28.91■■■□□ 2.22
VARS-224ENST00000479051 CCDC61Q9Y6R9 512 aa28.91■■■□□ 2.22
VARS-224ENST00000479051 MED1Q15648 1581 aaPredicted RBP28.91■■■□□ 2.22
VARS-224ENST00000479051 XPCQ01831 940 aaPredicted RBP28.89■■■□□ 2.22
VARS-224ENST00000479051 KRT28Q7Z3Y7 464 aa28.89■■■□□ 2.22
VARS-224ENST00000479051 SLC24A1O60721 1099 aa28.88■■■□□ 2.21
VARS-224ENST00000479051 NGDNQ8NEJ9 315 aaKnown RBP28.88■■■□□ 2.21
VARS-224ENST00000479051 CABP2Q9NPB3 220 aa28.88■■■□□ 2.21
VARS-224ENST00000479051 USP47Q96K76 1375 aa28.87■■■□□ 2.21
VARS-224ENST00000479051 PNPLA6Q8IY17 1366 aa28.86■■■□□ 2.21
VARS-224ENST00000479051 DISP3Q9P2K9 1392 aa28.85■■■□□ 2.21
VARS-224ENST00000479051 TOPAZ1Q8N9V7 1692 aa28.84■■■□□ 2.21
VARS-224ENST00000479051 ST20-MTHFSA0A0A6YYL1 179 aa28.84■■■□□ 2.21
VARS-224ENST00000479051 PHF23Q9BUL5 403 aaPredicted RBP28.82■■■□□ 2.2
VARS-224ENST00000479051 SBNO1A3KN83 1393 aa28.82■■■□□ 2.2
VARS-224ENST00000479051 PPIP5K1Q6PFW1 1433 aa28.82■■■□□ 2.2
VARS-224ENST00000479051 ATAD2Q6PL18 1390 aa28.81■■■□□ 2.2
VARS-224ENST00000479051 PLEKHG3A1L390 1219 aa28.81■■■□□ 2.2
VARS-224ENST00000479051 SPATA31A3Q5VYP0 1347 aa28.8■■■□□ 2.2
VARS-224ENST00000479051 TNS3Q68CZ2 1445 aa28.79■■■□□ 2.2
VARS-224ENST00000479051 NUTM2BA6NNL0 878 aaPredicted RBP28.79■■■□□ 2.2
VARS-224ENST00000479051 NUTM2EB1AL46 878 aaPredicted RBP28.79■■■□□ 2.2
VARS-224ENST00000479051 MEX3CQ5U5Q3 659 aaKnown RBP28.79■■■□□ 2.2
VARS-224ENST00000479051 NUTM2AQ8IVF1 878 aaPredicted RBP28.79■■■□□ 2.2
VARS-224ENST00000479051 ACEP12821 1306 aa28.78■■■□□ 2.2
VARS-224ENST00000479051 POLR3AO14802 1390 aaPredicted RBP28.77■■■□□ 2.2
VARS-224ENST00000479051 COL22A1Q8NFW1 1626 aaPredicted RBP28.76■■■□□ 2.19
VARS-224ENST00000479051 ARHGEF10O15013 1369 aa28.75■■■□□ 2.19
VARS-224ENST00000479051 LMOD2Q6P5Q4 547 aa28.75■■■□□ 2.19
VARS-224ENST00000479051 TESK2Q96S53 571 aa28.75■■■□□ 2.19
VARS-224ENST00000479051 CABP1Q9NZU7 370 aa28.75■■■□□ 2.19
VARS-224ENST00000479051 LRP6O75581 1613 aa28.74■■■□□ 2.19
VARS-224ENST00000479051 PUS7Q96PZ0 661 aaKnown RBP28.74■■■□□ 2.19
VARS-224ENST00000479051 PAK3O75914 559 aaPredicted RBP28.73■■■□□ 2.19
VARS-224ENST00000479051 TMF1P82094 1093 aa28.73■■■□□ 2.19
VARS-224ENST00000479051 TRPM3Q9HCF6 1732 aaPredicted RBP28.72■■■□□ 2.19
VARS-224ENST00000479051 EIF4G2P78344 907 aaKnown RBP eCLIP28.69■■■□□ 2.18
VARS-224ENST00000479051 BRD4O60885 1362 aaPredicted RBP28.68■■■□□ 2.18
VARS-224ENST00000479051 HAP1P54257 671 aaPredicted RBP28.68■■■□□ 2.18
VARS-224ENST00000479051 CDCA8Q53HL2 280 aa28.68■■■□□ 2.18
VARS-224ENST00000479051 TMC1Q8TDI8 760 aa28.66■■■□□ 2.18
VARS-224ENST00000479051 ZNF692Q9BU19 519 aaPredicted RBP28.66■■■□□ 2.18
VARS-224ENST00000479051 ADAMTS2O95450 1211 aa28.65■■■□□ 2.18
VARS-224ENST00000479051 ALS2Q96Q42 1657 aa28.64■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms