RNA–Protein interactions for RNA: ENST00000474828.1

SCAF11-206, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 757 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-206ENST00000474828 WAPLQ7Z5K2 1190 aa24.3■■□□□ 1.48
SCAF11-206ENST00000474828 RALGAPBQ86X10 1494 aa24.3■■□□□ 1.48
SCAF11-206ENST00000474828 CDC42BPGQ6DT37 1551 aa24.29■■□□□ 1.48
SCAF11-206ENST00000474828 ARHGEF28Q8N1W1 1705 aaKnown RBP24.28■■□□□ 1.48
SCAF11-206ENST00000474828 SCAF1Q9H7N4 1312 aaKnown RBP24.28■■□□□ 1.48
SCAF11-206ENST00000474828 MST1RQ04912 1400 aa24.27■■□□□ 1.48
SCAF11-206ENST00000474828 ADGRB2O60241 1585 aa24.26■■□□□ 1.47
SCAF11-206ENST00000474828 PRAM1Q96QH2 718 aa24.26■■□□□ 1.47
SCAF11-206ENST00000474828 SLAIN2Q9P270 581 aa24.26■■□□□ 1.47
SCAF11-206ENST00000474828 TRAK1Q9UPV9 953 aa24.26■■□□□ 1.47
SCAF11-206ENST00000474828 ATF3P18847 181 aa24.25■■□□□ 1.47
SCAF11-206ENST00000474828 PIP4K2BP78356 416 aa24.24■■□□□ 1.47
SCAF11-206ENST00000474828 C14orf37Q86TY3 774 aa24.24■■□□□ 1.47
SCAF11-206ENST00000474828 ROCK2O75116 1388 aaKnown RBP24.23■■□□□ 1.47
SCAF11-206ENST00000474828 SOCS7O14512 581 aa24.21■■□□□ 1.47
SCAF11-206ENST00000474828 C1orf167Q5SNV9 1468 aa24.19■■□□□ 1.46
SCAF11-206ENST00000474828 POGKQ9P215 609 aa24.18■■□□□ 1.46
SCAF11-206ENST00000474828 FMN2Q9NZ56 1722 aa24.18■■□□□ 1.46
SCAF11-206ENST00000474828 ROBO1Q9Y6N7 1651 aa24.18■■□□□ 1.46
SCAF11-206ENST00000474828 HSPA1LP34931 641 aa24.17■■□□□ 1.46
SCAF11-206ENST00000474828 CENPJQ9HC77 1338 aaPredicted RBP24.13■■□□□ 1.45
SCAF11-206ENST00000474828 BRINP3Q76B58 766 aa24.13■■□□□ 1.45
SCAF11-206ENST00000474828 SBNO2Q9Y2G9 1366 aa24.13■■□□□ 1.45
SCAF11-206ENST00000474828 ANKARQ7Z5J8 1434 aa24.12■■□□□ 1.45
SCAF11-206ENST00000474828 CARD11Q9BXL7 1154 aa24.12■■□□□ 1.45
SCAF11-206ENST00000474828 AHDC1Q5TGY3 1603 aaPredicted RBP24.12■■□□□ 1.45
SCAF11-206ENST00000474828 EIF3AQ14152 1382 aaKnown RBP24.11■■□□□ 1.45
SCAF11-206ENST00000474828 WASLO00401 505 aaPredicted RBP24.1■■□□□ 1.45
SCAF11-206ENST00000474828 SAFB2Q14151 953 aaKnown RBP eCLIP24.1■■□□□ 1.45
SCAF11-206ENST00000474828 USP32Q8NFA0 1604 aa24.09■■□□□ 1.45
SCAF11-206ENST00000474828 NHSL1Q5SYE7 1610 aa24.08■■□□□ 1.45
SCAF11-206ENST00000474828 TULP4Q9NRJ4 1543 aa24.08■■□□□ 1.45
SCAF11-206ENST00000474828 QRICH2Q9H0J4 1663 aa24.08■■□□□ 1.44
SCAF11-206ENST00000474828 MINK1Q8N4C8 1332 aaPredicted RBP24.08■■□□□ 1.44
SCAF11-206ENST00000474828 ORAI2Q96SN7 254 aa24.05■■□□□ 1.44
SCAF11-206ENST00000474828 HIRIP3Q9BW71 556 aaPredicted RBP24.05■■□□□ 1.44
SCAF11-206ENST00000474828 PRR36Q9H6K5 1346 aa24.04■■□□□ 1.44
SCAF11-206ENST00000474828 COL16A1Q07092 1604 aaPredicted RBP24.03■■□□□ 1.44
SCAF11-206ENST00000474828 ATP7BP35670 1465 aa24.03■■□□□ 1.44
SCAF11-206ENST00000474828 KIF1AQ12756 1690 aa24.02■■□□□ 1.44
SCAF11-206ENST00000474828 CDK19Q9BWU1 502 aa24.01■■□□□ 1.43
SCAF11-206ENST00000474828 TESK2Q96S53 571 aa24■■□□□ 1.43
SCAF11-206ENST00000474828 MED1Q15648 1581 aaPredicted RBP23.99■■□□□ 1.43
SCAF11-206ENST00000474828 SOS2Q07890 1332 aaPredicted RBP23.99■■□□□ 1.43
SCAF11-206ENST00000474828 PHLPP1O60346 1717 aa23.98■■□□□ 1.43
SCAF11-206ENST00000474828 ESCO1Q5FWF5 840 aa23.98■■□□□ 1.43
SCAF11-206ENST00000474828 USP47Q96K76 1375 aa23.98■■□□□ 1.43
SCAF11-206ENST00000474828 RGPD8O14715 1765 aaPredicted RBP23.98■■□□□ 1.43
SCAF11-206ENST00000474828 TOPAZ1Q8N9V7 1692 aa23.97■■□□□ 1.43
SCAF11-206ENST00000474828 PXDNQ92626 1479 aa23.97■■□□□ 1.43
SCAF11-206ENST00000474828 EVC2Q86UK5 1308 aa23.96■■□□□ 1.43
SCAF11-206ENST00000474828 SLC24A1O60721 1099 aa23.96■■□□□ 1.43
SCAF11-206ENST00000474828 NUDT16Q96DE0 195 aaKnown RBP23.96■■□□□ 1.43
SCAF11-206ENST00000474828 PUS7Q96PZ0 661 aaKnown RBP23.96■■□□□ 1.43
SCAF11-206ENST00000474828 NPHP3Q7Z494 1330 aa23.95■■□□□ 1.42
SCAF11-206ENST00000474828 ST20-MTHFSA0A0A6YYL1 179 aa23.95■■□□□ 1.42
SCAF11-206ENST00000474828 NUTM2FA1L443 756 aa23.95■■□□□ 1.42
SCAF11-206ENST00000474828 PHF8Q9UPP1 1060 aa23.95■■□□□ 1.42
SCAF11-206ENST00000474828 ITSN1Q15811 1721 aa23.94■■□□□ 1.42
SCAF11-206ENST00000474828 CCDC61Q9Y6R9 512 aa23.94■■□□□ 1.42
SCAF11-206ENST00000474828 PLEKHG3A1L390 1219 aa23.93■■□□□ 1.42
SCAF11-206ENST00000474828 POLR3AO14802 1390 aaPredicted RBP23.91■■□□□ 1.42
SCAF11-206ENST00000474828 JCADQ9P266 1359 aa23.91■■□□□ 1.42
SCAF11-206ENST00000474828 FOXO3O43524 673 aa23.9■■□□□ 1.42
SCAF11-206ENST00000474828 DDX17Q92841 729 aaKnown RBP23.9■■□□□ 1.42
SCAF11-206ENST00000474828 LRRC59Q96AG4 307 aaKnown RBP23.89■■□□□ 1.41
SCAF11-206ENST00000474828 CABP2Q9NPB3 220 aa23.89■■□□□ 1.41
SCAF11-206ENST00000474828 SHPRHQ149N8 1683 aa23.89■■□□□ 1.41
SCAF11-206ENST00000474828 SRPK2P78362 688 aaKnown RBP23.88■■□□□ 1.41
SCAF11-206ENST00000474828 ATAD2Q6PL18 1390 aa23.87■■□□□ 1.41
SCAF11-206ENST00000474828 SBNO1A3KN83 1393 aa23.86■■□□□ 1.41
SCAF11-206ENST00000474828 PPIP5K1Q6PFW1 1433 aa23.84■■□□□ 1.41
SCAF11-206ENST00000474828 PMFBP1Q8TBY8 1022 aa23.84■■□□□ 1.41
SCAF11-206ENST00000474828 TRPM3Q9HCF6 1732 aaPredicted RBP23.84■■□□□ 1.41
SCAF11-206ENST00000474828 COL22A1Q8NFW1 1626 aaPredicted RBP23.84■■□□□ 1.41
SCAF11-206ENST00000474828 PNPLA6Q8IY17 1366 aa23.83■■□□□ 1.41
SCAF11-206ENST00000474828 EIF4G2P78344 907 aaKnown RBP eCLIP23.83■■□□□ 1.411e-13■■■■■ 57.3
SCAF11-206ENST00000474828 KRT28Q7Z3Y7 464 aa23.83■■□□□ 1.41
SCAF11-206ENST00000474828 SPATA31A3Q5VYP0 1347 aa23.83■■□□□ 1.4
SCAF11-206ENST00000474828 ACEP12821 1306 aa23.82■■□□□ 1.4
SCAF11-206ENST00000474828 SPATA31A6Q5VVP1 1343 aa23.82■■□□□ 1.4
SCAF11-206ENST00000474828 BRD4O60885 1362 aaPredicted RBP23.81■■□□□ 1.4
SCAF11-206ENST00000474828 PSME1Q06323 249 aa23.8■■□□□ 1.4
SCAF11-206ENST00000474828 CPSF1Q10570 1443 aaKnown RBP23.8■■□□□ 1.4
SCAF11-206ENST00000474828 CABP1Q9NZU7 370 aa23.8■■□□□ 1.4
SCAF11-206ENST00000474828 TNS3Q68CZ2 1445 aa23.79■■□□□ 1.4
SCAF11-206ENST00000474828 SSH2Q76I76 1423 aa23.79■■□□□ 1.4
SCAF11-206ENST00000474828 TMF1P82094 1093 aa23.79■■□□□ 1.4
SCAF11-206ENST00000474828 NINLQ9Y2I6 1382 aa23.78■■□□□ 1.4
SCAF11-206ENST00000474828 HSPA5P11021 654 aaKnown RBP23.78■■□□□ 1.4
SCAF11-206ENST00000474828 NGDNQ8NEJ9 315 aaKnown RBP23.78■■□□□ 1.4
SCAF11-206ENST00000474828 ALS2Q96Q42 1657 aa23.77■■□□□ 1.4
SCAF11-206ENST00000474828 CD163L1Q9NR16 1453 aa23.77■■□□□ 1.4
SCAF11-206ENST00000474828 XPCQ01831 940 aaPredicted RBP23.76■■□□□ 1.39
SCAF11-206ENST00000474828 USP6P35125 1406 aa23.75■■□□□ 1.39
SCAF11-206ENST00000474828 CDCA8Q53HL2 280 aa23.74■■□□□ 1.39
SCAF11-206ENST00000474828 ZNF692Q9BU19 519 aaPredicted RBP23.74■■□□□ 1.39
SCAF11-206ENST00000474828 ARHGEF10O15013 1369 aa23.74■■□□□ 1.39
SCAF11-206ENST00000474828 LRP6O75581 1613 aa23.73■■□□□ 1.39
SCAF11-206ENST00000474828 AKAP12Q02952 1782 aa23.73■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms