RNA–Protein interactions for RNA: ENST00000473924.1

DDX56-209, Transcript of DEAD-box helicase 56, humanhuman

TSL 5

Gene DDX56, Length 385 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-209ENST00000473924 ROCK2O75116 1388 aaKnown RBP17.71■□□□□ 0.43
DDX56-209ENST00000473924 DLC1Q96QB1 1528 aa17.71■□□□□ 0.43
DDX56-209ENST00000473924 NALCNQ8IZF0 1738 aa17.7■□□□□ 0.42
DDX56-209ENST00000473924 PLEKHH1Q9ULM0 1364 aa17.7■□□□□ 0.42
DDX56-209ENST00000473924 SAFB2Q14151 953 aaKnown RBP eCLIP17.7■□□□□ 0.42
DDX56-209ENST00000473924 DCCP43146 1447 aa17.69■□□□□ 0.42
DDX56-209ENST00000473924 SLAIN2Q9P270 581 aa17.68■□□□□ 0.42
DDX56-209ENST00000473924 ARHGEF28Q8N1W1 1705 aaKnown RBP17.66■□□□□ 0.42
DDX56-209ENST00000473924 CARD11Q9BXL7 1154 aa17.65■□□□□ 0.42
DDX56-209ENST00000473924 RALGAPBQ86X10 1494 aa17.64■□□□□ 0.41
DDX56-209ENST00000473924 MINK1Q8N4C8 1332 aaPredicted RBP17.63■□□□□ 0.41
DDX56-209ENST00000473924 CDC42BPGQ6DT37 1551 aa17.62■□□□□ 0.41
DDX56-209ENST00000473924 HIRIP3Q9BW71 556 aaPredicted RBP17.62■□□□□ 0.41
DDX56-209ENST00000473924 GPRASP1Q5JY77 1395 aa17.62■□□□□ 0.41
DDX56-209ENST00000473924 CENPJQ9HC77 1338 aaPredicted RBP17.61■□□□□ 0.41
DDX56-209ENST00000473924 EIF3AQ14152 1382 aaKnown RBP17.61■□□□□ 0.41
DDX56-209ENST00000473924 MST1RQ04912 1400 aa17.61■□□□□ 0.41
DDX56-209ENST00000473924 ROBO1Q9Y6N7 1651 aa17.61■□□□□ 0.41
DDX56-209ENST00000473924 NUTM2FA1L443 756 aa17.6■□□□□ 0.41
DDX56-209ENST00000473924 C1orf167Q5SNV9 1468 aa17.57■□□□□ 0.4
DDX56-209ENST00000473924 ADGRB2O60241 1585 aa17.57■□□□□ 0.4
DDX56-209ENST00000473924 FMN2Q9NZ56 1722 aa17.56■□□□□ 0.4
DDX56-209ENST00000473924 QRICH2Q9H0J4 1663 aa17.56■□□□□ 0.4
DDX56-209ENST00000473924 WASLO00401 505 aaPredicted RBP17.56■□□□□ 0.4
DDX56-209ENST00000473924 HSPA1LP34931 641 aa17.56■□□□□ 0.4
DDX56-209ENST00000473924 BRINP3Q76B58 766 aa17.56■□□□□ 0.4
DDX56-209ENST00000473924 ESCO1Q5FWF5 840 aa17.55■□□□□ 0.4
DDX56-209ENST00000473924 ORAI2Q96SN7 254 aa17.54■□□□□ 0.4
DDX56-209ENST00000473924 CDK19Q9BWU1 502 aa17.52■□□□□ 0.4
DDX56-209ENST00000473924 SRPK2P78362 688 aaKnown RBP17.51■□□□□ 0.39
DDX56-209ENST00000473924 PHLPP1O60346 1717 aa17.5■□□□□ 0.39
DDX56-209ENST00000473924 ANKARQ7Z5J8 1434 aa17.5■□□□□ 0.39
DDX56-209ENST00000473924 TULP4Q9NRJ4 1543 aa17.5■□□□□ 0.39
DDX56-209ENST00000473924 USP47Q96K76 1375 aa17.5■□□□□ 0.39
DDX56-209ENST00000473924 EVC2Q86UK5 1308 aa17.49■□□□□ 0.39
DDX56-209ENST00000473924 RGPD8O14715 1765 aaPredicted RBP17.48■□□□□ 0.39
DDX56-209ENST00000473924 AHDC1Q5TGY3 1603 aaPredicted RBP17.48■□□□□ 0.39
DDX56-209ENST00000473924 ST20-MTHFSA0A0A6YYL1 179 aa17.48■□□□□ 0.39
DDX56-209ENST00000473924 DDX17Q92841 729 aaKnown RBP17.48■□□□□ 0.39
DDX56-209ENST00000473924 PHF8Q9UPP1 1060 aa17.48■□□□□ 0.39
DDX56-209ENST00000473924 USP32Q8NFA0 1604 aa17.47■□□□□ 0.39
DDX56-209ENST00000473924 NUDT16Q96DE0 195 aaKnown RBP17.47■□□□□ 0.39
DDX56-209ENST00000473924 CABP2Q9NPB3 220 aa17.47■□□□□ 0.39
DDX56-209ENST00000473924 NPHP3Q7Z494 1330 aa17.47■□□□□ 0.39
DDX56-209ENST00000473924 PRR36Q9H6K5 1346 aa17.47■□□□□ 0.39
DDX56-209ENST00000473924 KIF1AQ12756 1690 aa17.46■□□□□ 0.39
DDX56-209ENST00000473924 SBNO2Q9Y2G9 1366 aa17.46■□□□□ 0.39
DDX56-209ENST00000473924 FOXO3O43524 673 aa17.46■□□□□ 0.39
DDX56-209ENST00000473924 PMFBP1Q8TBY8 1022 aa17.46■□□□□ 0.39
DDX56-209ENST00000473924 NHSL1Q5SYE7 1610 aa17.46■□□□□ 0.39
DDX56-209ENST00000473924 ATP7BP35670 1465 aa17.44■□□□□ 0.38
DDX56-209ENST00000473924 ITSN1Q15811 1721 aa17.44■□□□□ 0.38
DDX56-209ENST00000473924 SLC24A1O60721 1099 aa17.44■□□□□ 0.38
DDX56-209ENST00000473924 CCDC61Q9Y6R9 512 aa17.44■□□□□ 0.38
DDX56-209ENST00000473924 COL16A1Q07092 1604 aaPredicted RBP17.43■□□□□ 0.38
DDX56-209ENST00000473924 EIF4G2P78344 907 aaKnown RBP eCLIP17.42■□□□□ 0.38
DDX56-209ENST00000473924 XPCQ01831 940 aaPredicted RBP17.42■□□□□ 0.38
DDX56-209ENST00000473924 PSME1Q06323 249 aa17.42■□□□□ 0.38
DDX56-209ENST00000473924 NGDNQ8NEJ9 315 aaKnown RBP17.42■□□□□ 0.38
DDX56-209ENST00000473924 LRRC59Q96AG4 307 aaKnown RBP17.42■□□□□ 0.38
DDX56-209ENST00000473924 TESK2Q96S53 571 aa17.41■□□□□ 0.38
DDX56-209ENST00000473924 SOS2Q07890 1332 aaPredicted RBP17.41■□□□□ 0.38
DDX56-209ENST00000473924 TMF1P82094 1093 aa17.4■□□□□ 0.38
DDX56-209ENST00000473924 KRT28Q7Z3Y7 464 aa17.4■□□□□ 0.38
DDX56-209ENST00000473924 JCADQ9P266 1359 aa17.4■□□□□ 0.38
DDX56-209ENST00000473924 PPIP5K1Q6PFW1 1433 aa17.39■□□□□ 0.38
DDX56-209ENST00000473924 TOPAZ1Q8N9V7 1692 aa17.39■□□□□ 0.37
DDX56-209ENST00000473924 ATAD2Q6PL18 1390 aa17.39■□□□□ 0.37
DDX56-209ENST00000473924 HSPA5P11021 654 aaKnown RBP17.38■□□□□ 0.37
DDX56-209ENST00000473924 CABP1Q9NZU7 370 aa17.38■□□□□ 0.37
DDX56-209ENST00000473924 PXDNQ92626 1479 aa17.37■□□□□ 0.37
DDX56-209ENST00000473924 PLEKHG3A1L390 1219 aa17.37■□□□□ 0.37
DDX56-209ENST00000473924 ACEP12821 1306 aa17.37■□□□□ 0.37
DDX56-209ENST00000473924 CDCA8Q53HL2 280 aa17.35■□□□□ 0.37
DDX56-209ENST00000473924 TMC1Q8TDI8 760 aa17.35■□□□□ 0.37
DDX56-209ENST00000473924 PUS7Q96PZ0 661 aaKnown RBP17.35■□□□□ 0.37
DDX56-209ENST00000473924 POLR3AO14802 1390 aaPredicted RBP17.34■□□□□ 0.37
DDX56-209ENST00000473924 PAK3O75914 559 aaPredicted RBP17.34■□□□□ 0.37
DDX56-209ENST00000473924 SHPRHQ149N8 1683 aa17.34■□□□□ 0.37
DDX56-209ENST00000473924 LMOD2Q6P5Q4 547 aa17.34■□□□□ 0.37
DDX56-209ENST00000473924 DISP3Q9P2K9 1392 aa17.34■□□□□ 0.37
DDX56-209ENST00000473924 PNPLA6Q8IY17 1366 aa17.33■□□□□ 0.36
DDX56-209ENST00000473924 SPATA31A3Q5VYP0 1347 aa17.33■□□□□ 0.36
DDX56-209ENST00000473924 SBNO1A3KN83 1393 aa17.32■□□□□ 0.36
DDX56-209ENST00000473924 SPATA31A6Q5VVP1 1343 aa17.32■□□□□ 0.36
DDX56-209ENST00000473924 TNS3Q68CZ2 1445 aa17.31■□□□□ 0.36
DDX56-209ENST00000473924 NUTM2BA6NNL0 878 aaPredicted RBP17.31■□□□□ 0.36
DDX56-209ENST00000473924 NUTM2EB1AL46 878 aaPredicted RBP17.31■□□□□ 0.36
DDX56-209ENST00000473924 NUTM2AQ8IVF1 878 aaPredicted RBP17.31■□□□□ 0.36
DDX56-209ENST00000473924 ZNF692Q9BU19 519 aaPredicted RBP17.3■□□□□ 0.36
DDX56-209ENST00000473924 ZEB1P37275 1124 aaPredicted RBP17.29■□□□□ 0.36
DDX56-209ENST00000473924 POLR3GLQ9BT43 218 aa17.29■□□□□ 0.36
DDX56-209ENST00000473924 SLC12A5Q9H2X9 1139 aa17.29■□□□□ 0.36
DDX56-209ENST00000473924 ARHGEF10O15013 1369 aa17.28■□□□□ 0.36
DDX56-209ENST00000473924 TRPM3Q9HCF6 1732 aaPredicted RBP17.28■□□□□ 0.36
DDX56-209ENST00000473924 PLEKHG5O94827 1062 aa17.28■□□□□ 0.36
DDX56-209ENST00000473924 MEX3CQ5U5Q3 659 aaKnown RBP17.28■□□□□ 0.36
DDX56-209ENST00000473924 HDGFL2Q7Z4V5 671 aaPredicted RBP17.28■□□□□ 0.36
DDX56-209ENST00000473924 TERF2IPQ9NYB0 399 aa17.28■□□□□ 0.36
DDX56-209ENST00000473924 NINLQ9Y2I6 1382 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms