RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 NECTIN2Q92692 538 aa17.71■□□□□ 0.43
CCDC88A-211ENST00000471947 RUNDC1Q96C34 613 aa17.71■□□□□ 0.43
CCDC88A-211ENST00000471947 E9PSI1 815 aa17.7■□□□□ 0.42
CCDC88A-211ENST00000471947 DIAPH1O60610 1272 aaKnown RBP17.7■□□□□ 0.42
CCDC88A-211ENST00000471947 PRKAR2BP31323 418 aa17.7■□□□□ 0.42
CCDC88A-211ENST00000471947 EXOSC9Q06265 439 aaKnown RBP17.7■□□□□ 0.42
CCDC88A-211ENST00000471947 SLFN5Q08AF3 891 aa17.7■□□□□ 0.42
CCDC88A-211ENST00000471947 RTEL1-TNFRSF6BF6WH68 1400 aa17.7■□□□□ 0.42
CCDC88A-211ENST00000471947 GPRASP1Q5JY77 1395 aa17.69■□□□□ 0.42
CCDC88A-211ENST00000471947 PRDM15P57071 1507 aaPredicted RBP17.69■□□□□ 0.42
CCDC88A-211ENST00000471947 ZFYVE16Q7Z3T8 1539 aa17.68■□□□□ 0.42
CCDC88A-211ENST00000471947 CLASP1Q7Z460 1538 aa17.68■□□□□ 0.42
CCDC88A-211ENST00000471947 XPCQ01831 940 aaPredicted RBP17.68■□□□□ 0.42
CCDC88A-211ENST00000471947 STAC3Q96MF2 364 aa17.67■□□□□ 0.42
CCDC88A-211ENST00000471947 UHRF1BP1LA0JNW5 1464 aa17.67■□□□□ 0.42
CCDC88A-211ENST00000471947 LRPPRCP42704 1394 aaKnown RBP17.66■□□□□ 0.42
CCDC88A-211ENST00000471947 FYB1O15117 783 aa17.66■□□□□ 0.42
CCDC88A-211ENST00000471947 POGZQ7Z3K3 1410 aa17.65■□□□□ 0.42
CCDC88A-211ENST00000471947 TSPOAP1O95153 1857 aa17.65■□□□□ 0.42
CCDC88A-211ENST00000471947 COG3Q96JB2 828 aa17.64■□□□□ 0.42
CCDC88A-211ENST00000471947 C1orf115Q9H7X2 142 aa17.64■□□□□ 0.41
CCDC88A-211ENST00000471947 MIS18AQ9NYP9 233 aa17.63■□□□□ 0.41
CCDC88A-211ENST00000471947 FAM83GA6ND36 823 aa17.63■□□□□ 0.41
CCDC88A-211ENST00000471947 EID1Q9Y6B2 187 aa17.63■□□□□ 0.41
CCDC88A-211ENST00000471947 NUDT16Q96DE0 195 aaKnown RBP17.62■□□□□ 0.41
CCDC88A-211ENST00000471947 MYH16Q9H6N6 1097 aa17.61■□□□□ 0.41
CCDC88A-211ENST00000471947 CLTCL1P53675 1640 aa17.61■□□□□ 0.41
CCDC88A-211ENST00000471947 SHROOM2Q13796 1616 aa17.59■□□□□ 0.41
CCDC88A-211ENST00000471947 HDGFP51858 240 aaKnown RBP17.59■□□□□ 0.41
CCDC88A-211ENST00000471947 RPGRIP1LQ68CZ1 1315 aa17.59■□□□□ 0.41
CCDC88A-211ENST00000471947 AMPHP49418 695 aa17.59■□□□□ 0.41
CCDC88A-211ENST00000471947 IGHDP01880 384 aa17.58■□□□□ 0.4
CCDC88A-211ENST00000471947 RLBP1P12271 317 aa17.58■□□□□ 0.4
CCDC88A-211ENST00000471947 SLKQ9H2G2 1235 aaPredicted RBP17.58■□□□□ 0.4
CCDC88A-211ENST00000471947 A0A1W2PP64 1363 aa17.58■□□□□ 0.4
CCDC88A-211ENST00000471947 TMPOP42166 694 aaKnown RBP17.57■□□□□ 0.4
CCDC88A-211ENST00000471947 SLC4A10Q6U841 1118 aa17.57■□□□□ 0.4
CCDC88A-211ENST00000471947 IPO9Q96P70 1041 aaKnown RBP17.57■□□□□ 0.4
CCDC88A-211ENST00000471947 SULT6B1Q6IMI4 303 aa17.57■□□□□ 0.4
CCDC88A-211ENST00000471947 E9PCH4 1651 aa17.57■□□□□ 0.4
CCDC88A-211ENST00000471947 ASXL1Q8IXJ9 1541 aa17.57■□□□□ 0.4
CCDC88A-211ENST00000471947 MYT1Q01538 1121 aa17.57■□□□□ 0.4
CCDC88A-211ENST00000471947 ERVK-7P63135 1459 aa17.56■□□□□ 0.4
CCDC88A-211ENST00000471947 PHACTR3Q96KR7 559 aa17.56■□□□□ 0.4
CCDC88A-211ENST00000471947 PTPRTO14522 1441 aa17.55■□□□□ 0.4
CCDC88A-211ENST00000471947 AEBP1Q8IUX7 1158 aa17.55■□□□□ 0.4
CCDC88A-211ENST00000471947 TRPM1Q7Z4N2 1603 aa17.55■□□□□ 0.4
CCDC88A-211ENST00000471947 NLRP6P59044 892 aa17.54■□□□□ 0.4
CCDC88A-211ENST00000471947 NOB1Q9ULX3 412 aaKnown RBP17.54■□□□□ 0.4
CCDC88A-211ENST00000471947 IQGAP3Q86VI3 1631 aa17.54■□□□□ 0.4
CCDC88A-211ENST00000471947 KRT24Q2M2I5 525 aa17.54■□□□□ 0.4
CCDC88A-211ENST00000471947 A0A0G2JS52 829 aa17.54■□□□□ 0.4
CCDC88A-211ENST00000471947 MCM10Q7L590 875 aa17.53■□□□□ 0.4
CCDC88A-211ENST00000471947 RARSP54136 660 aaKnown RBP17.53■□□□□ 0.4
CCDC88A-211ENST00000471947 WASLO00401 505 aaPredicted RBP17.52■□□□□ 0.4
CCDC88A-211ENST00000471947 ZKSCAN2Q63HK3 967 aa17.52■□□□□ 0.4
CCDC88A-211ENST00000471947 USHBP1Q8N6Y0 703 aa17.52■□□□□ 0.4
CCDC88A-211ENST00000471947 SSH1Q8WYL5 1049 aa17.52■□□□□ 0.4
CCDC88A-211ENST00000471947 CENPQQ7L2Z9 268 aaPredicted RBP17.52■□□□□ 0.39
CCDC88A-211ENST00000471947 AMOTL2Q9Y2J4 779 aa17.52■□□□□ 0.39
CCDC88A-211ENST00000471947 CCDC61Q9Y6R9 512 aa17.52■□□□□ 0.39
CCDC88A-211ENST00000471947 MFAP1P55081 439 aaKnown RBP17.51■□□□□ 0.39
CCDC88A-211ENST00000471947 DZIP1LQ8IYY4 767 aaKnown RBP17.51■□□□□ 0.39
CCDC88A-211ENST00000471947 TRPM2O94759 1503 aa17.51■□□□□ 0.39
CCDC88A-211ENST00000471947 UNC13BO14795 1591 aa17.51■□□□□ 0.39
CCDC88A-211ENST00000471947 LTKP29376 864 aa17.51■□□□□ 0.39
CCDC88A-211ENST00000471947 PLXNC1O60486 1568 aa17.51■□□□□ 0.39
CCDC88A-211ENST00000471947 LNPKQ9C0E8 428 aa17.51■□□□□ 0.39
CCDC88A-211ENST00000471947 HSP90AB2PQ58FF8 381 aa17.5■□□□□ 0.39
CCDC88A-211ENST00000471947 FANCIQ9NVI1 1328 aa17.5■□□□□ 0.39
CCDC88A-211ENST00000471947 POLKQ9UBT6 870 aa17.5■□□□□ 0.39
CCDC88A-211ENST00000471947 ZMYM3Q14202 1370 aa17.49■□□□□ 0.39
CCDC88A-211ENST00000471947 BACH2Q9BYV9 841 aa17.48■□□□□ 0.39
CCDC88A-211ENST00000471947 PCDHB15Q9Y5E8 787 aa17.48■□□□□ 0.39
CCDC88A-211ENST00000471947 UPF2Q9HAU5 1272 aaKnown RBP17.48■□□□□ 0.39
CCDC88A-211ENST00000471947 FOXD4L1Q9NU39 408 aa17.48■□□□□ 0.39
CCDC88A-211ENST00000471947 RTF1Q92541 710 aaKnown RBP17.47■□□□□ 0.39
CCDC88A-211ENST00000471947 TSPYL6Q8N831 410 aa17.47■□□□□ 0.39
CCDC88A-211ENST00000471947 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.47■□□□□ 0.39
CCDC88A-211ENST00000471947 EIF2AK4Q9P2K8 1649 aaKnown RBP17.46■□□□□ 0.39
CCDC88A-211ENST00000471947 ABTB2Q8N961 1025 aa17.46■□□□□ 0.39
CCDC88A-211ENST00000471947 RTN4Q9NQC3 1192 aaKnown RBP17.46■□□□□ 0.39
CCDC88A-211ENST00000471947 PDZRN3Q9UPQ7 1066 aa17.46■□□□□ 0.39
CCDC88A-211ENST00000471947 YTHDC2Q9H6S0 1430 aaKnown RBP17.46■□□□□ 0.39
CCDC88A-211ENST00000471947 RIMS2Q9UQ26 1411 aa17.46■□□□□ 0.39
CCDC88A-211ENST00000471947 FOXO3O43524 673 aa17.46■□□□□ 0.39
CCDC88A-211ENST00000471947 CEP152O94986 1710 aa17.46■□□□□ 0.39
CCDC88A-211ENST00000471947 METP08581 1390 aa17.46■□□□□ 0.39
CCDC88A-211ENST00000471947 TPRNQ4KMQ1 711 aa17.46■□□□□ 0.39
CCDC88A-211ENST00000471947 ESCO1Q5FWF5 840 aa17.45■□□□□ 0.38
CCDC88A-211ENST00000471947 TMEM57Q8N5G2 664 aa17.45■□□□□ 0.38
CCDC88A-211ENST00000471947 ACEP12821 1306 aa17.45■□□□□ 0.38
CCDC88A-211ENST00000471947 RNF123Q5XPI4 1314 aa17.45■□□□□ 0.38
CCDC88A-211ENST00000471947 ANKRD45Q5TZF3 282 aa17.45■□□□□ 0.38
CCDC88A-211ENST00000471947 ANKRD36BQ8N2N9 1353 aa17.44■□□□□ 0.38
CCDC88A-211ENST00000471947 EIF2S2P20042 333 aaKnown RBP17.44■□□□□ 0.38
CCDC88A-211ENST00000471947 RWDD1Q9H446 243 aaPredicted RBP17.44■□□□□ 0.38
CCDC88A-211ENST00000471947 ATAD2Q6PL18 1390 aa17.44■□□□□ 0.38
CCDC88A-211ENST00000471947 DEKP35659 375 aaKnown RBP17.43■□□□□ 0.38
CCDC88A-211ENST00000471947 FAM161AQ3B820 660 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms