RNA–Protein interactions for RNA: ENST00000471701.1

PRPF40A-207, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 293 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-207ENST00000471701 PRR20AP86496 221 aa8.88□□□□□ -0.99
PRPF40A-207ENST00000471701 REPIN1Q9BWE0 567 aaKnown RBP8.88□□□□□ -0.99
PRPF40A-207ENST00000471701 PKDCCQ504Y2 493 aa8.87□□□□□ -0.99
PRPF40A-207ENST00000471701 PRDM9Q9NQV7 894 aa8.87□□□□□ -0.99
PRPF40A-207ENST00000471701 TNFRSF10AO00220 468 aa8.86□□□□□ -0.99
PRPF40A-207ENST00000471701 FOXC1Q12948 553 aa8.86□□□□□ -0.99
PRPF40A-207ENST00000471701 AMHR2Q16671 573 aa8.86□□□□□ -0.99
PRPF40A-207ENST00000471701 TRIM67Q6ZTA4 783 aa8.86□□□□□ -0.99
PRPF40A-207ENST00000471701 HLA-CQ95604 372 aa8.86□□□□□ -0.99
PRPF40A-207ENST00000471701 AK7Q96M32 723 aa8.86□□□□□ -0.99
PRPF40A-207ENST00000471701 GDF9O60383 454 aa8.85□□□□□ -0.99
PRPF40A-207ENST00000471701 DGAT1O75907 488 aa8.85□□□□□ -0.99
PRPF40A-207ENST00000471701 MMP16P51512 607 aa8.85□□□□□ -0.99
PRPF40A-207ENST00000471701 GUCA2AQ02747 115 aa8.84□□□□□ -0.99
PRPF40A-207ENST00000471701 FDX1P10109 184 aa8.83□□□□□ -1
PRPF40A-207ENST00000471701 GIGYF2Q6Y7W6 1299 aaKnown RBP8.83□□□□□ -1
PRPF40A-207ENST00000471701 CCDC24Q8N4L8 307 aa8.83□□□□□ -1
PRPF40A-207ENST00000471701 SPIRE2Q8WWL2 714 aa8.83□□□□□ -1
PRPF40A-207ENST00000471701 C6orf229H3BNL8 230 aa8.82□□□□□ -1
PRPF40A-207ENST00000471701 TRIM66O15016 1216 aa8.82□□□□□ -1
PRPF40A-207ENST00000471701 SYMPKQ92797 1274 aaKnown RBP8.82□□□□□ -1
PRPF40A-207ENST00000471701 FAM187AA6NFU0 413 aa8.81□□□□□ -1
PRPF40A-207ENST00000471701 DXOO77932 396 aaKnown RBP8.81□□□□□ -1
PRPF40A-207ENST00000471701 DIXDC1Q155Q3 683 aa8.81□□□□□ -1
PRPF40A-207ENST00000471701 BEGAINQ9BUH8 593 aa8.81□□□□□ -1
PRPF40A-207ENST00000471701 LCE2BO14633 110 aa8.8□□□□□ -1
PRPF40A-207ENST00000471701 RETREG3Q86VR2 466 aa8.8□□□□□ -1
PRPF40A-207ENST00000471701 CYP4X1Q8N118 509 aa8.8□□□□□ -1
PRPF40A-207ENST00000471701 PKD2L1Q9P0L9 805 aa8.8□□□□□ -1
PRPF40A-207ENST00000471701 NDUFV2P19404 249 aa8.79□□□□□ -1
PRPF40A-207ENST00000471701 ZNF787Q6DD87 383 aa8.79□□□□□ -1
PRPF40A-207ENST00000471701 MOXD2PA6NHM9 499 aa8.78□□□□□ -1
PRPF40A-207ENST00000471701 JUNDP17535 347 aa8.78□□□□□ -1
PRPF40A-207ENST00000471701 TTC24A2A3L6 582 aaPredicted RBP8.77□□□□□ -1.01
PRPF40A-207ENST00000471701 MYT1Q01538 1121 aa8.77□□□□□ -1.01
PRPF40A-207ENST00000471701 TRIM32Q13049 653 aa8.77□□□□□ -1.01
PRPF40A-207ENST00000471701 PARP9Q8IXQ6 854 aa8.77□□□□□ -1.01
PRPF40A-207ENST00000471701 PCDHGC3Q9UN70 934 aa8.77□□□□□ -1.01
PRPF40A-207ENST00000471701 SLC24A3Q9HC58 644 aa8.76□□□□□ -1.01
PRPF40A-207ENST00000471701 SPDYE5A6NIY4 337 aa8.75□□□□□ -1.01
PRPF40A-207ENST00000471701 PDE4DQ08499 809 aa8.75□□□□□ -1.01
PRPF40A-207ENST00000471701 NUDT12Q9BQG2 462 aa8.75□□□□□ -1.01
PRPF40A-207ENST00000471701 TBC1D2Q9BYX2 928 aa8.75□□□□□ -1.01
PRPF40A-207ENST00000471701 WNT7AO00755 349 aa8.74□□□□□ -1.01
PRPF40A-207ENST00000471701 MS4A1P11836 297 aa8.74□□□□□ -1.01
PRPF40A-207ENST00000471701 MTMR2Q13614 643 aa8.74□□□□□ -1.01
PRPF40A-207ENST00000471701 TOR4AQ9NXH8 423 aa8.74□□□□□ -1.01
PRPF40A-207ENST00000471701 GJA5P36382 358 aa8.73□□□□□ -1.01
PRPF40A-207ENST00000471701 SNIP1Q8TAD8 396 aaKnown RBP8.73□□□□□ -1.01
PRPF40A-207ENST00000471701 PRR7Q8TB68 274 aa8.73□□□□□ -1.01
PRPF40A-207ENST00000471701 BCANQ96GW7 911 aa8.73□□□□□ -1.01
PRPF40A-207ENST00000471701 WNT7BP56706 349 aa8.71□□□□□ -1.02
PRPF40A-207ENST00000471701 RIC3Q7Z5B4 369 aa8.71□□□□□ -1.02
PRPF40A-207ENST00000471701 RC3H1Q5TC82 1133 aaKnown RBP8.7□□□□□ -1.02
PRPF40A-207ENST00000471701 RSBN1LQ6PCB5 846 aaPredicted RBP8.7□□□□□ -1.02
PRPF40A-207ENST00000471701 MRGPRX2Q96LB1 330 aa8.7□□□□□ -1.02
PRPF40A-207ENST00000471701 SPTLC1O15269 473 aa8.69□□□□□ -1.02
PRPF40A-207ENST00000471701 CCNYL3P0C7X3 344 aa8.69□□□□□ -1.02
PRPF40A-207ENST00000471701 PTPRNQ16849 979 aa8.69□□□□□ -1.02
PRPF40A-207ENST00000471701 PTCRAQ6ISU1 281 aaPredicted RBP8.69□□□□□ -1.02
PRPF40A-207ENST00000471701 AAASQ9NRG9 546 aa8.69□□□□□ -1.02
PRPF40A-207ENST00000471701 EVA1BQ9NVM1 165 aa8.69□□□□□ -1.02
PRPF40A-207ENST00000471701 PCDHB15Q9Y5E8 787 aa8.69□□□□□ -1.02
PRPF40A-207ENST00000471701 AXIN1O15169 862 aa8.68□□□□□ -1.02
PRPF40A-207ENST00000471701 SLC24A1O60721 1099 aa8.68□□□□□ -1.02
PRPF40A-207ENST00000471701 DESI1Q6ICB0 168 aa8.68□□□□□ -1.02
PRPF40A-207ENST00000471701 ZBTB3Q9H5J0 574 aa8.68□□□□□ -1.02
PRPF40A-207ENST00000471701 AVPP01185 164 aa8.67□□□□□ -1.02
PRPF40A-207ENST00000471701 CTC1Q2NKJ3 1217 aa8.67□□□□□ -1.02
PRPF40A-207ENST00000471701 NUTM2BA6NNL0 878 aaPredicted RBP8.66□□□□□ -1.02
PRPF40A-207ENST00000471701 NUTM2EB1AL46 878 aaPredicted RBP8.66□□□□□ -1.02
PRPF40A-207ENST00000471701 ST8SIA5O15466 376 aa8.66□□□□□ -1.02
PRPF40A-207ENST00000471701 SKOR1P84550 965 aa8.66□□□□□ -1.02
PRPF40A-207ENST00000471701 KCNH2Q12809 1159 aa8.66□□□□□ -1.02
PRPF40A-207ENST00000471701 CSPP1Q1MSJ5 1256 aa8.66□□□□□ -1.02
PRPF40A-207ENST00000471701 NUTM2DQ5VT03 806 aaPredicted RBP8.66□□□□□ -1.02
PRPF40A-207ENST00000471701 PRPF38BQ5VTL8 546 aaKnown RBP8.66□□□□□ -1.02
PRPF40A-207ENST00000471701 NUTM2AQ8IVF1 878 aaPredicted RBP8.66□□□□□ -1.02
PRPF40A-207ENST00000471701 HRCP23327 699 aa8.65□□□□□ -1.02
PRPF40A-207ENST00000471701 CTHP32929 405 aa8.65□□□□□ -1.02
PRPF40A-207ENST00000471701 EHBP1Q8NDI1 1231 aa8.65□□□□□ -1.02
PRPF40A-207ENST00000471701 RSPH6AQ9H0K4 717 aa8.65□□□□□ -1.02
PRPF40A-207ENST00000471701 J3QL48 77 aa8.64□□□□□ -1.03
PRPF40A-207ENST00000471701 SMPD1P17405 629 aa8.64□□□□□ -1.03
PRPF40A-207ENST00000471701 CRIPAKQ8N1N5 446 aa8.64□□□□□ -1.03
PRPF40A-207ENST00000471701 UNC93B1Q9H1C4 597 aa8.64□□□□□ -1.03
PRPF40A-207ENST00000471701 ALDH1A1P00352 501 aa8.63□□□□□ -1.03
PRPF40A-207ENST00000471701 MYSM1Q5VVJ2 828 aa8.63□□□□□ -1.03
PRPF40A-207ENST00000471701 LYPD8Q6UX82 237 aa8.63□□□□□ -1.03
PRPF40A-207ENST00000471701 BAP1Q92560 729 aa8.63□□□□□ -1.03
PRPF40A-207ENST00000471701 POTECB2RU33 542 aa8.62□□□□□ -1.03
PRPF40A-207ENST00000471701 SMCPP49901 116 aaPredicted RBP8.62□□□□□ -1.03
PRPF40A-207ENST00000471701 SH3BP2P78314 561 aa8.62□□□□□ -1.03
PRPF40A-207ENST00000471701 CABLES1Q8TDN4 633 aa8.62□□□□□ -1.03
PRPF40A-207ENST00000471701 TSC1Q92574 1164 aa8.62□□□□□ -1.03
PRPF40A-207ENST00000471701 CFAP99D6REC4 459 aa8.61□□□□□ -1.03
PRPF40A-207ENST00000471701 TUSC1Q2TAM9 212 aa8.61□□□□□ -1.03
PRPF40A-207ENST00000471701 ATP1B4Q9UN42 357 aaPredicted RBP8.61□□□□□ -1.03
PRPF40A-207ENST00000471701 LINC01559Q495D7 138 aa8.6□□□□□ -1.03
PRPF40A-207ENST00000471701 ZNF775Q96BV0 537 aaPredicted RBP8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms