RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 USP46P62068 366 aa10.45□□□□□ -0.74
CCDC88A-210ENST00000468534 NUTM1Q86Y26 1132 aa10.45□□□□□ -0.74
CCDC88A-210ENST00000468534 REPIN1Q9BWE0 567 aaKnown RBP10.45□□□□□ -0.74
CCDC88A-210ENST00000468534 RPIAP49247 311 aa10.44□□□□□ -0.74
CCDC88A-210ENST00000468534 TTLL12Q14166 644 aaPredicted RBP10.44□□□□□ -0.74
CCDC88A-210ENST00000468534 BARGINQ6ZT62 677 aa10.44□□□□□ -0.74
CCDC88A-210ENST00000468534 ZC3H15Q8WU90 426 aaKnown RBP10.44□□□□□ -0.74
CCDC88A-210ENST00000468534 USB1Q9BQ65 265 aaKnown RBP10.44□□□□□ -0.74
CCDC88A-210ENST00000468534 ZBTB24O43167 697 aaPredicted RBP10.43□□□□□ -0.74
CCDC88A-210ENST00000468534 ZMYND10O75800 440 aa10.43□□□□□ -0.74
CCDC88A-210ENST00000468534 CD2BP2O95400 341 aaKnown RBP10.43□□□□□ -0.74
CCDC88A-210ENST00000468534 PKD2L1Q9P0L9 805 aa10.42□□□□□ -0.74
CCDC88A-210ENST00000468534 DGAT1O75907 488 aa10.41□□□□□ -0.74
CCDC88A-210ENST00000468534 CCDC24Q8N4L8 307 aa10.41□□□□□ -0.74
CCDC88A-210ENST00000468534 SYMPKQ92797 1274 aaKnown RBP10.41□□□□□ -0.74
CCDC88A-210ENST00000468534 SSTR3P32745 418 aaPredicted RBP10.4□□□□□ -0.74
CCDC88A-210ENST00000468534 ZNF787Q6DD87 383 aa10.4□□□□□ -0.74
CCDC88A-210ENST00000468534 MMP16P51512 607 aa10.39□□□□□ -0.75
CCDC88A-210ENST00000468534 MYT1Q01538 1121 aa10.39□□□□□ -0.75
CCDC88A-210ENST00000468534 DXOO77932 396 aaKnown RBP10.37□□□□□ -0.75
CCDC88A-210ENST00000468534 GIGYF2Q6Y7W6 1299 aaKnown RBP10.36□□□□□ -0.75
CCDC88A-210ENST00000468534 ST8SIA5O15466 376 aa10.35□□□□□ -0.75
CCDC88A-210ENST00000468534 FDX1P10109 184 aa10.35□□□□□ -0.75
CCDC88A-210ENST00000468534 TRIM32Q13049 653 aa10.35□□□□□ -0.75
CCDC88A-210ENST00000468534 AMHR2Q16671 573 aa10.35□□□□□ -0.75
CCDC88A-210ENST00000468534 CYP4X1Q8N118 509 aa10.35□□□□□ -0.75
CCDC88A-210ENST00000468534 C6orf229H3BNL8 230 aa10.34□□□□□ -0.75
CCDC88A-210ENST00000468534 NDUFV2P19404 249 aa10.34□□□□□ -0.75
CCDC88A-210ENST00000468534 SPIRE2Q8WWL2 714 aa10.34□□□□□ -0.75
CCDC88A-210ENST00000468534 PCDHGC3Q9UN70 934 aa10.34□□□□□ -0.75
CCDC88A-210ENST00000468534 JUNDP17535 347 aa10.33□□□□□ -0.76
CCDC88A-210ENST00000468534 TOR4AQ9NXH8 423 aa10.32□□□□□ -0.76
CCDC88A-210ENST00000468534 TTC24A2A3L6 582 aaPredicted RBP10.31□□□□□ -0.76
CCDC88A-210ENST00000468534 MOXD2PA6NHM9 499 aa10.31□□□□□ -0.76
CCDC88A-210ENST00000468534 RETREG3Q86VR2 466 aa10.31□□□□□ -0.76
CCDC88A-210ENST00000468534 BEGAINQ9BUH8 593 aa10.31□□□□□ -0.76
CCDC88A-210ENST00000468534 PARP9Q8IXQ6 854 aa10.3□□□□□ -0.76
CCDC88A-210ENST00000468534 POTECB2RU33 542 aa10.29□□□□□ -0.76
CCDC88A-210ENST00000468534 WNT7AO00755 349 aa10.29□□□□□ -0.76
CCDC88A-210ENST00000468534 TRIM66O15016 1216 aa10.29□□□□□ -0.76
CCDC88A-210ENST00000468534 MRGPRX2Q96LB1 330 aa10.29□□□□□ -0.76
CCDC88A-210ENST00000468534 NUDT12Q9BQG2 462 aa10.29□□□□□ -0.76
CCDC88A-210ENST00000468534 AAASQ9NRG9 546 aa10.29□□□□□ -0.76
CCDC88A-210ENST00000468534 AK7Q96M32 723 aa10.27□□□□□ -0.77
CCDC88A-210ENST00000468534 MS4A1P11836 297 aa10.26□□□□□ -0.77
CCDC88A-210ENST00000468534 SKOR1P84550 965 aa10.25□□□□□ -0.77
CCDC88A-210ENST00000468534 PTCRAQ6ISU1 281 aaPredicted RBP10.25□□□□□ -0.77
CCDC88A-210ENST00000468534 SNIP1Q8TAD8 396 aaKnown RBP10.25□□□□□ -0.77
CCDC88A-210ENST00000468534 TBC1D2Q9BYX2 928 aa10.25□□□□□ -0.77
CCDC88A-210ENST00000468534 RC3H1Q5TC82 1133 aaKnown RBP10.24□□□□□ -0.77
CCDC88A-210ENST00000468534 PRR7Q8TB68 274 aa10.24□□□□□ -0.77
CCDC88A-210ENST00000468534 DACH1Q9UI36 760 aa10.24□□□□□ -0.77
CCDC88A-210ENST00000468534 J3QL48 77 aa10.23□□□□□ -0.77
CCDC88A-210ENST00000468534 AXIN1O15169 862 aa10.23□□□□□ -0.77
CCDC88A-210ENST00000468534 MTMR2Q13614 643 aa10.23□□□□□ -0.77
CCDC88A-210ENST00000468534 ZNF775Q96BV0 537 aaPredicted RBP10.23□□□□□ -0.77
CCDC88A-210ENST00000468534 AVPP01185 164 aa10.22□□□□□ -0.77
CCDC88A-210ENST00000468534 CCNYL3P0C7X3 344 aa10.22□□□□□ -0.77
CCDC88A-210ENST00000468534 SMPD1P17405 629 aa10.22□□□□□ -0.77
CCDC88A-210ENST00000468534 SLC24A3Q9HC58 644 aa10.22□□□□□ -0.77
CCDC88A-210ENST00000468534 RSBN1LQ6PCB5 846 aaPredicted RBP10.21□□□□□ -0.77
CCDC88A-210ENST00000468534 WNT7BP56706 349 aa10.2□□□□□ -0.78
CCDC88A-210ENST00000468534 PDE4DQ08499 809 aa10.2□□□□□ -0.78
CCDC88A-210ENST00000468534 CSPP1Q1MSJ5 1256 aa10.2□□□□□ -0.78
CCDC88A-210ENST00000468534 CRIPAKQ8N1N5 446 aa10.2□□□□□ -0.78
CCDC88A-210ENST00000468534 PCDHB15Q9Y5E8 787 aa10.2□□□□□ -0.78
CCDC88A-210ENST00000468534 PTPRNQ16849 979 aa10.19□□□□□ -0.78
CCDC88A-210ENST00000468534 SLC24A1O60721 1099 aa10.18□□□□□ -0.78
CCDC88A-210ENST00000468534 DIXDC1Q155Q3 683 aa10.18□□□□□ -0.78
CCDC88A-210ENST00000468534 CTC1Q2NKJ3 1217 aa10.18□□□□□ -0.78
CCDC88A-210ENST00000468534 LINC01559Q495D7 138 aa10.18□□□□□ -0.78
CCDC88A-210ENST00000468534 EHBP1Q8NDI1 1231 aa10.18□□□□□ -0.78
CCDC88A-210ENST00000468534 UNC93B1Q9H1C4 597 aa10.18□□□□□ -0.78
CCDC88A-210ENST00000468534 GMPR2Q9P2T1 348 aaKnown RBP10.18□□□□□ -0.78
CCDC88A-210ENST00000468534 ALDH1A1P00352 501 aa10.17□□□□□ -0.78
CCDC88A-210ENST00000468534 RIC3Q7Z5B4 369 aa10.17□□□□□ -0.78
CCDC88A-210ENST00000468534 HPS1Q92902 700 aa10.17□□□□□ -0.78
CCDC88A-210ENST00000468534 SPDYE5A6NIY4 337 aa10.16□□□□□ -0.78
CCDC88A-210ENST00000468534 CABLES1Q8TDN4 633 aa10.16□□□□□ -0.78
CCDC88A-210ENST00000468534 CFAP99D6REC4 459 aa10.15□□□□□ -0.78
CCDC88A-210ENST00000468534 SPTLC1O15269 473 aa10.15□□□□□ -0.78
CCDC88A-210ENST00000468534 HRCP23327 699 aa10.15□□□□□ -0.78
CCDC88A-210ENST00000468534 CTHP32929 405 aa10.15□□□□□ -0.78
CCDC88A-210ENST00000468534 SH3BP2P78314 561 aa10.15□□□□□ -0.78
CCDC88A-210ENST00000468534 KCNH2Q12809 1159 aa10.15□□□□□ -0.78
CCDC88A-210ENST00000468534 EVA1BQ9NVM1 165 aa10.15□□□□□ -0.78
CCDC88A-210ENST00000468534 GJA5P36382 358 aa10.14□□□□□ -0.79
CCDC88A-210ENST00000468534 SMCPP49901 116 aaPredicted RBP10.14□□□□□ -0.79
CCDC88A-210ENST00000468534 BAP1Q92560 729 aa10.14□□□□□ -0.79
CCDC88A-210ENST00000468534 TSC1Q92574 1164 aa10.14□□□□□ -0.79
CCDC88A-210ENST00000468534 ZBTB3Q9H5J0 574 aa10.14□□□□□ -0.79
CCDC88A-210ENST00000468534 C11orf95C9JLR9 678 aaPredicted RBP10.13□□□□□ -0.79
CCDC88A-210ENST00000468534 DESI1Q6ICB0 168 aa10.13□□□□□ -0.79
CCDC88A-210ENST00000468534 LIMD1Q9UGP4 676 aa10.12□□□□□ -0.79
CCDC88A-210ENST00000468534 MYSM1Q5VVJ2 828 aa10.11□□□□□ -0.79
CCDC88A-210ENST00000468534 ATP13A2Q9NQ11 1180 aa10.11□□□□□ -0.79
CCDC88A-210ENST00000468534 WASF2Q9Y6W5 498 aa10.11□□□□□ -0.79
CCDC88A-210ENST00000468534 NUTM2BA6NNL0 878 aaPredicted RBP10.1□□□□□ -0.79
CCDC88A-210ENST00000468534 NUTM2EB1AL46 878 aaPredicted RBP10.1□□□□□ -0.79
CCDC88A-210ENST00000468534 NUTM2DQ5VT03 806 aaPredicted RBP10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 112.5 ms