RNA–Protein interactions for RNA: ENST00000467077.1

XRN1-206, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 3

Gene XRN1, Length 674 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-206ENST00000467077 ATP13A2Q9NQ11 1180 aa12.12□□□□□ -0.47
XRN1-206ENST00000467077 FECHP22830 423 aa12.1□□□□□ -0.47
XRN1-206ENST00000467077 TRIM32Q13049 653 aa12.1□□□□□ -0.47
XRN1-206ENST00000467077 SMYD5Q6GMV2 418 aa12.1□□□□□ -0.47
XRN1-206ENST00000467077 BRICD5Q6PL45 260 aa12.1□□□□□ -0.47
XRN1-206ENST00000467077 RTN4Q9NQC3 1192 aaKnown RBP12.1□□□□□ -0.47
XRN1-206ENST00000467077 RNF19BQ6ZMZ0 732 aa12.09□□□□□ -0.47
XRN1-206ENST00000467077 SMPD1P17405 629 aa12.08□□□□□ -0.48
XRN1-206ENST00000467077 Q3C1V9 767 aa12.08□□□□□ -0.48
XRN1-206ENST00000467077 RBM26Q5T8P6 1007 aaKnown RBP12.08□□□□□ -0.48
XRN1-206ENST00000467077 REPIN1Q9BWE0 567 aaKnown RBP12.08□□□□□ -0.48
XRN1-206ENST00000467077 NLRP7Q8WX94 980 aa12.07□□□□□ -0.48
XRN1-206ENST00000467077 TRIM47Q96LD4 638 aa12.07□□□□□ -0.48
XRN1-206ENST00000467077 TERTO14746 1132 aaKnown RBP12.06□□□□□ -0.48
XRN1-206ENST00000467077 KIFC2Q96AC6 838 aa12.06□□□□□ -0.48
XRN1-206ENST00000467077 MRGPRX2Q96LB1 330 aa12.06□□□□□ -0.48
XRN1-206ENST00000467077 SNRPBP14678 240 aaKnown RBP12.05□□□□□ -0.48
XRN1-206ENST00000467077 J3QL48 77 aa12.03□□□□□ -0.48
XRN1-206ENST00000467077 MMP16P51512 607 aa12.02□□□□□ -0.49
XRN1-206ENST00000467077 TESPA1A2RU30 521 aaPredicted RBP12□□□□□ -0.49
XRN1-206ENST00000467077 FAM181BA6NEQ2 426 aa12□□□□□ -0.49
XRN1-206ENST00000467077 GPR37O15354 613 aa11.98□□□□□ -0.49
XRN1-206ENST00000467077 CCDC24Q8N4L8 307 aa11.98□□□□□ -0.49
XRN1-206ENST00000467077 SLC16A10Q8TF71 515 aa11.98□□□□□ -0.49
XRN1-206ENST00000467077 HPS1Q92902 700 aa11.98□□□□□ -0.49
XRN1-206ENST00000467077 USB1Q9BQ65 265 aaKnown RBP11.97□□□□□ -0.49
XRN1-206ENST00000467077 DXOO77932 396 aaKnown RBP11.96□□□□□ -0.49
XRN1-206ENST00000467077 WNT7BP56706 349 aa11.95□□□□□ -0.5
XRN1-206ENST00000467077 PHOX2BQ99453 314 aa11.95□□□□□ -0.5
XRN1-206ENST00000467077 RC3H1Q5TC82 1133 aaKnown RBP11.94□□□□□ -0.5
XRN1-206ENST00000467077 LCE2CQ5TA81 110 aa11.93□□□□□ -0.5
XRN1-206ENST00000467077 KDM4AO75164 1064 aa11.92□□□□□ -0.5
XRN1-206ENST00000467077 GPIHBP1Q8IV16 184 aa11.92□□□□□ -0.5
XRN1-206ENST00000467077 ALDH1A1P00352 501 aa11.91□□□□□ -0.5
XRN1-206ENST00000467077 CD46P15529 392 aa11.91□□□□□ -0.5
XRN1-206ENST00000467077 USP46P62068 366 aa11.89□□□□□ -0.51
XRN1-206ENST00000467077 NXF1Q9UBU9 619 aaKnown RBP11.89□□□□□ -0.51
XRN1-206ENST00000467077 SKOR1P84550 965 aa11.88□□□□□ -0.51
XRN1-206ENST00000467077 IRF7Q92985 503 aa11.86□□□□□ -0.51
XRN1-206ENST00000467077 WASF2Q9Y6W5 498 aa11.86□□□□□ -0.51
XRN1-206ENST00000467077 EHBP1Q8NDI1 1231 aa11.85□□□□□ -0.51
XRN1-206ENST00000467077 ZSCAN1Q8NBB4 408 aa11.84□□□□□ -0.51
XRN1-206ENST00000467077 BMP1P13497 986 aa11.83□□□□□ -0.52
XRN1-206ENST00000467077 JUNDP17535 347 aa11.83□□□□□ -0.52
XRN1-206ENST00000467077 NPAS3Q8IXF0 933 aa11.83□□□□□ -0.52
XRN1-206ENST00000467077 CAPN5O15484 640 aaPredicted RBP11.82□□□□□ -0.52
XRN1-206ENST00000467077 HOXA2O43364 376 aa11.82□□□□□ -0.52
XRN1-206ENST00000467077 GMPRP36959 345 aa11.82□□□□□ -0.52
XRN1-206ENST00000467077 HLA-CQ95604 372 aa11.82□□□□□ -0.52
XRN1-206ENST00000467077 MAP2K5Q13163 448 aa11.79□□□□□ -0.52
XRN1-206ENST00000467077 NUDT12Q9BQG2 462 aa11.79□□□□□ -0.52
XRN1-206ENST00000467077 MDM2Q00987 491 aaPredicted RBP11.78□□□□□ -0.52
XRN1-206ENST00000467077 TRIM46Q7Z4K8 759 aa11.78□□□□□ -0.52
XRN1-206ENST00000467077 VEGFBP49765 207 aa11.76□□□□□ -0.53
XRN1-206ENST00000467077 GUCA2AQ02747 115 aa11.76□□□□□ -0.53
XRN1-206ENST00000467077 RETREG3Q86VR2 466 aa11.75□□□□□ -0.53
XRN1-206ENST00000467077 H3BM21 787 aa11.74□□□□□ -0.53
XRN1-206ENST00000467077 SIAH2O43255 324 aa11.74□□□□□ -0.53
XRN1-206ENST00000467077 NUTM1Q86Y26 1132 aa11.72□□□□□ -0.53
XRN1-206ENST00000467077 SYMPKQ92797 1274 aaKnown RBP11.72□□□□□ -0.53
XRN1-206ENST00000467077 CCNYL3P0C7X3 344 aa11.7□□□□□ -0.54
XRN1-206ENST00000467077 MS4A1P11836 297 aa11.7□□□□□ -0.54
XRN1-206ENST00000467077 PTCRAQ6ISU1 281 aaPredicted RBP11.7□□□□□ -0.54
XRN1-206ENST00000467077 ZFP42Q96MM3 310 aa11.7□□□□□ -0.54
XRN1-206ENST00000467077 TULP1O00294 542 aaPredicted RBP11.69□□□□□ -0.54
XRN1-206ENST00000467077 IRF6O14896 467 aa11.69□□□□□ -0.54
XRN1-206ENST00000467077 SH3BP2P78314 561 aa11.69□□□□□ -0.54
XRN1-206ENST00000467077 ERBB4Q15303 1308 aa11.68□□□□□ -0.54
XRN1-206ENST00000467077 PLEKHG3A1L390 1219 aa11.68□□□□□ -0.54
XRN1-206ENST00000467077 LORP23490 312 aaPredicted RBP11.68□□□□□ -0.54
XRN1-206ENST00000467077 SCARF1Q14162 830 aa11.68□□□□□ -0.54
XRN1-206ENST00000467077 GPCPD1Q9NPB8 672 aa11.68□□□□□ -0.54
XRN1-206ENST00000467077 TLL2Q9Y6L7 1015 aa11.68□□□□□ -0.54
XRN1-206ENST00000467077 C6orf229H3BNL8 230 aa11.67□□□□□ -0.54
XRN1-206ENST00000467077 CLCN1P35523 988 aa11.67□□□□□ -0.54
XRN1-206ENST00000467077 KRI1Q8N9T8 703 aaKnown RBP11.66□□□□□ -0.54
XRN1-206ENST00000467077 MINK1Q8N4C8 1332 aaPredicted RBP11.65□□□□□ -0.54
XRN1-206ENST00000467077 FDX1P10109 184 aa11.65□□□□□ -0.54
XRN1-206ENST00000467077 UNC93B1Q9H1C4 597 aa11.65□□□□□ -0.54
XRN1-206ENST00000467077 PTPRNQ16849 979 aa11.64□□□□□ -0.55
XRN1-206ENST00000467077 LINC01559Q495D7 138 aa11.64□□□□□ -0.55
XRN1-206ENST00000467077 CCDC102AQ96A19 550 aa11.64□□□□□ -0.55
XRN1-206ENST00000467077 FAM217BQ9NTX9 383 aaPredicted RBP11.64□□□□□ -0.55
XRN1-206ENST00000467077 NNTQ13423 1086 aa11.63□□□□□ -0.55
XRN1-206ENST00000467077 MRPL14Q6P1L8 145 aaKnown RBP11.63□□□□□ -0.55
XRN1-206ENST00000467077 ADH1CP00326 375 aa11.61□□□□□ -0.55
XRN1-206ENST00000467077 VARSP26640 1264 aaKnown RBP11.61□□□□□ -0.55
XRN1-206ENST00000467077 PURBQ96QR8 312 aaKnown RBP11.61□□□□□ -0.55
XRN1-206ENST00000467077 WDR4P57081 412 aaKnown RBP11.59□□□□□ -0.55
XRN1-206ENST00000467077 ZNF511Q8NB15 262 aa11.59□□□□□ -0.55
XRN1-206ENST00000467077 BAP1Q92560 729 aa11.59□□□□□ -0.55
XRN1-206ENST00000467077 EVA1BQ9NVM1 165 aa11.58□□□□□ -0.56
XRN1-206ENST00000467077 LOC100996750A0A140TA64 210 aa11.57□□□□□ -0.56
XRN1-206ENST00000467077 KCNH2Q12809 1159 aa11.57□□□□□ -0.56
XRN1-206ENST00000467077 MPNDQ8N594 471 aa11.57□□□□□ -0.56
XRN1-206ENST00000467077 KRTAP4-6Q9BYQ5 205 aa11.57□□□□□ -0.56
XRN1-206ENST00000467077 PCDHGC3Q9UN70 934 aa11.57□□□□□ -0.56
XRN1-206ENST00000467077 VSIG8P0DPA2 414 aa11.56□□□□□ -0.56
XRN1-206ENST00000467077 TIMP2P16035 220 aa11.56□□□□□ -0.56
XRN1-206ENST00000467077 SOBPA7XYQ1 873 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms