RNA–Protein interactions for RNA: ENST00000460211.5

ATG4B-213, Transcript of autophagy related 4B cysteine peptidase, humanhuman

TSL 2

Gene ATG4B, Length 871 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4B-213ENST00000460211 CDK12Q9NYV4 1490 aaPredicted RBP21.69■■□□□ 1.06
ATG4B-213ENST00000460211 IFT172Q9UG01 1749 aa21.67■■□□□ 1.06
ATG4B-213ENST00000460211 PNPLA6Q8IY17 1366 aa21.67■■□□□ 1.06
ATG4B-213ENST00000460211 STK26Q9P289 416 aa21.67■■□□□ 1.06
ATG4B-213ENST00000460211 PTCH1Q13635 1447 aa21.66■■□□□ 1.06
ATG4B-213ENST00000460211 TMEM132EQ6IEE7 984 aa21.66■■□□□ 1.06
ATG4B-213ENST00000460211 QTRT2Q9H974 415 aaKnown RBP21.66■■□□□ 1.06
ATG4B-213ENST00000460211 RGS12O14924 1447 aa21.65■■□□□ 1.06
ATG4B-213ENST00000460211 CFAP70Q5T0N1 1121 aa21.65■■□□□ 1.06
ATG4B-213ENST00000460211 NRXN1Q9ULB1 1477 aa21.64■■□□□ 1.06
ATG4B-213ENST00000460211 LRPPRCP42704 1394 aaKnown RBP21.64■■□□□ 1.06
ATG4B-213ENST00000460211 DHX57Q6P158 1386 aaKnown RBP21.64■■□□□ 1.06
ATG4B-213ENST00000460211 ADAMTS2O95450 1211 aa21.64■■□□□ 1.05
ATG4B-213ENST00000460211 ROBO2Q9HCK4 1378 aa21.63■■□□□ 1.05
ATG4B-213ENST00000460211 PRAG1Q86YV5 1406 aa21.63■■□□□ 1.05
ATG4B-213ENST00000460211 ABCC11Q96J66 1382 aa21.62■■□□□ 1.05
ATG4B-213ENST00000460211 RBM6P78332 1123 aaKnown RBP21.62■■□□□ 1.05
ATG4B-213ENST00000460211 C1orf167Q5SNV9 1468 aa21.62■■□□□ 1.05
ATG4B-213ENST00000460211 NGLY1Q96IV0 654 aa21.61■■□□□ 1.05
ATG4B-213ENST00000460211 SIRT1Q96EB6 747 aa21.59■■□□□ 1.05
ATG4B-213ENST00000460211 ORAI2Q96SN7 254 aa21.59■■□□□ 1.05
ATG4B-213ENST00000460211 YTHDC2Q9H6S0 1430 aaKnown RBP21.59■■□□□ 1.05
ATG4B-213ENST00000460211 TECPR2O15040 1411 aa21.58■■□□□ 1.05
ATG4B-213ENST00000460211 NEUROD1Q13562 356 aa21.57■■□□□ 1.04
ATG4B-213ENST00000460211 LAMC1P11047 1609 aa21.56■■□□□ 1.04
ATG4B-213ENST00000460211 WAPLQ7Z5K2 1190 aa21.56■■□□□ 1.04
ATG4B-213ENST00000460211 SIN3AQ96ST3 1273 aa21.55■■□□□ 1.04
ATG4B-213ENST00000460211 POGKQ9P215 609 aa21.53■■□□□ 1.04
ATG4B-213ENST00000460211 USP21Q9UK80 565 aa21.53■■□□□ 1.04
ATG4B-213ENST00000460211 SOS2Q07890 1332 aaPredicted RBP21.53■■□□□ 1.04
ATG4B-213ENST00000460211 L3MBTL2Q969R5 705 aa21.5■■□□□ 1.03
ATG4B-213ENST00000460211 TRAK1Q9UPV9 953 aa21.5■■□□□ 1.03
ATG4B-213ENST00000460211 PRAM1Q96QH2 718 aa21.49■■□□□ 1.03
ATG4B-213ENST00000460211 ATAD2Q6PL18 1390 aa21.48■■□□□ 1.03
ATG4B-213ENST00000460211 PLEKHH1Q9ULM0 1364 aa21.48■■□□□ 1.03
ATG4B-213ENST00000460211 TRPC5Q9UL62 973 aaPredicted RBP21.48■■□□□ 1.03
ATG4B-213ENST00000460211 KNDC1Q76NI1 1749 aa21.48■■□□□ 1.03
ATG4B-213ENST00000460211 SAFB2Q14151 953 aaKnown RBP eCLIP21.46■■□□□ 1.03
ATG4B-213ENST00000460211 ESCO1Q5FWF5 840 aa21.46■■□□□ 1.03
ATG4B-213ENST00000460211 PCGF6Q9BYE7 350 aa21.46■■□□□ 1.03
ATG4B-213ENST00000460211 COL22A1Q8NFW1 1626 aaPredicted RBP21.46■■□□□ 1.03
ATG4B-213ENST00000460211 DLC1Q96QB1 1528 aa21.45■■□□□ 1.02
ATG4B-213ENST00000460211 ADGRB1O14514 1584 aa21.45■■□□□ 1.02
ATG4B-213ENST00000460211 XPCQ01831 940 aaPredicted RBP21.45■■□□□ 1.02
ATG4B-213ENST00000460211 FNBP4Q8N3X1 1017 aaPredicted RBP21.45■■□□□ 1.02
ATG4B-213ENST00000460211 ATRNO75882 1429 aa21.44■■□□□ 1.02
ATG4B-213ENST00000460211 NUTM2FA1L443 756 aa21.43■■□□□ 1.02
ATG4B-213ENST00000460211 CDC42BPGQ6DT37 1551 aa21.43■■□□□ 1.02
ATG4B-213ENST00000460211 SRCAPQ6ZRS2 3230 aa21.42■■□□□ 1.02
ATG4B-213ENST00000460211 NPHP3Q7Z494 1330 aa21.42■■□□□ 1.02
ATG4B-213ENST00000460211 MARF1Q9Y4F3 1742 aaKnown RBP21.41■■□□□ 1.02
ATG4B-213ENST00000460211 FOXO3O43524 673 aa21.41■■□□□ 1.02
ATG4B-213ENST00000460211 PXDNQ92626 1479 aa21.4■■□□□ 1.02
ATG4B-213ENST00000460211 TONSLQ96HA7 1378 aa21.4■■□□□ 1.02
ATG4B-213ENST00000460211 NBPF1Q3BBV0 1214 aa21.4■■□□□ 1.02
ATG4B-213ENST00000460211 BCL9LQ86UU0 1499 aa21.38■■□□□ 1.01
ATG4B-213ENST00000460211 EP400Q96L91 3159 aa21.38■■□□□ 1.01
ATG4B-213ENST00000460211 MINK1Q8N4C8 1332 aaPredicted RBP21.37■■□□□ 1.01
ATG4B-213ENST00000460211 KIAA1210Q9ULL0 1709 aa21.37■■□□□ 1.01
ATG4B-213ENST00000460211 ZRANB1Q9UGI0 708 aa21.36■■□□□ 1.01
ATG4B-213ENST00000460211 HIRIP3Q9BW71 556 aaPredicted RBP21.35■■□□□ 1.01
ATG4B-213ENST00000460211 EIF3AQ14152 1382 aaKnown RBP21.35■■□□□ 1.01
ATG4B-213ENST00000460211 WASLO00401 505 aaPredicted RBP21.33■■□□□ 1.01
ATG4B-213ENST00000460211 GJD4Q96KN9 370 aaPredicted RBP21.33■■□□□ 1.01
ATG4B-213ENST00000460211 PHF8Q9UPP1 1060 aa21.31■■□□□ 1
ATG4B-213ENST00000460211 ROCK2O75116 1388 aaKnown RBP21.31■■□□□ 1
ATG4B-213ENST00000460211 ANKARQ7Z5J8 1434 aa21.29■■□□□ 1
ATG4B-213ENST00000460211 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.29■■□□□ 1
ATG4B-213ENST00000460211 FMN2Q9NZ56 1722 aa21.29■■□□□ 1
ATG4B-213ENST00000460211 PLEKHG5O94827 1062 aa21.29■■□□□ 1
ATG4B-213ENST00000460211 CLSPNQ9HAW4 1339 aa21.29■■□□□ 1
ATG4B-213ENST00000460211 CENPJQ9HC77 1338 aaPredicted RBP21.29■■□□□ 1
ATG4B-213ENST00000460211 GLI3P10071 1580 aa21.28■■□□□ 1
ATG4B-213ENST00000460211 ADGRB2O60241 1585 aa21.27■■□□□ 1
ATG4B-213ENST00000460211 RALGAPBQ86X10 1494 aa21.27■■□□□ 1
ATG4B-213ENST00000460211 PSME1Q06323 249 aa21.27■■□□□ 1
ATG4B-213ENST00000460211 NBPF8Q3BBV2 869 aa21.27■■□□□ 1
ATG4B-213ENST00000460211 CCDC125Q86Z20 511 aa21.27■■□□□ 1
ATG4B-213ENST00000460211 UNC5CLQ8IV45 518 aa21.27■■□□□ 1
ATG4B-213ENST00000460211 SPATA31A3Q5VYP0 1347 aa21.27■□□□□ 0.99
ATG4B-213ENST00000460211 KIF1AQ12756 1690 aa21.26■□□□□ 0.99
ATG4B-213ENST00000460211 RGPD8O14715 1765 aaPredicted RBP21.25■□□□□ 0.99
ATG4B-213ENST00000460211 SLIT2O94813 1529 aa21.25■□□□□ 0.99
ATG4B-213ENST00000460211 BRWD3Q6RI45 1802 aa21.25■□□□□ 0.99
ATG4B-213ENST00000460211 KRT28Q7Z3Y7 464 aa21.25■□□□□ 0.99
ATG4B-213ENST00000460211 ARHGEF28Q8N1W1 1705 aaKnown RBP21.25■□□□□ 0.99
ATG4B-213ENST00000460211 CDK19Q9BWU1 502 aa21.25■□□□□ 0.99
ATG4B-213ENST00000460211 USP32Q8NFA0 1604 aa21.25■□□□□ 0.99
ATG4B-213ENST00000460211 HAP1P54257 671 aaPredicted RBP21.24■□□□□ 0.99
ATG4B-213ENST00000460211 PMFBP1Q8TBY8 1022 aa21.24■□□□□ 0.99
ATG4B-213ENST00000460211 CABLES1Q8TDN4 633 aa21.23■□□□□ 0.99
ATG4B-213ENST00000460211 CARD11Q9BXL7 1154 aa21.23■□□□□ 0.99
ATG4B-213ENST00000460211 NUDT16Q96DE0 195 aaKnown RBP21.22■□□□□ 0.99
ATG4B-213ENST00000460211 TIMELESSQ9UNS1 1208 aa21.22■□□□□ 0.99
ATG4B-213ENST00000460211 TULP4Q9NRJ4 1543 aa21.22■□□□□ 0.99
ATG4B-213ENST00000460211 TRPM1Q7Z4N2 1603 aa21.22■□□□□ 0.99
ATG4B-213ENST00000460211 CCER1Q8TC90 406 aaPredicted RBP21.21■□□□□ 0.99
ATG4B-213ENST00000460211 BLMP54132 1417 aaPredicted RBP21.21■□□□□ 0.99
ATG4B-213ENST00000460211 SRPK2P78362 688 aaKnown RBP21.2■□□□□ 0.98
ATG4B-213ENST00000460211 LMOD2Q6P5Q4 547 aa21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms