RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 ARHGEF28Q8N1W1 1705 aaKnown RBP15.24■□□□□ 0.03
UBR4-208ENST00000459947 ROCK2O75116 1388 aaKnown RBP15.24■□□□□ 0.03
UBR4-208ENST00000459947 SLAIN2Q9P270 581 aa15.22■□□□□ 0.03
UBR4-208ENST00000459947 ANKARQ7Z5J8 1434 aa15.22■□□□□ 0.03
UBR4-208ENST00000459947 MST1RQ04912 1400 aa15.21■□□□□ 0.03
UBR4-208ENST00000459947 ILDR1Q86SU0 546 aaPredicted RBP15.21■□□□□ 0.03
UBR4-208ENST00000459947 SCAF1Q9H7N4 1312 aaKnown RBP15.21■□□□□ 0.03
UBR4-208ENST00000459947 FMN2Q9NZ56 1722 aa15.2■□□□□ 0.02
UBR4-208ENST00000459947 PRAM1Q96QH2 718 aa15.2■□□□□ 0.02
UBR4-208ENST00000459947 KIF1AQ12756 1690 aa15.2■□□□□ 0.02
UBR4-208ENST00000459947 TRAK1Q9UPV9 953 aa15.19■□□□□ 0.02
UBR4-208ENST00000459947 AHDC1Q5TGY3 1603 aaPredicted RBP15.19■□□□□ 0.02
UBR4-208ENST00000459947 ROBO1Q9Y6N7 1651 aa15.19■□□□□ 0.02
UBR4-208ENST00000459947 CENPJQ9HC77 1338 aaPredicted RBP15.18■□□□□ 0.02
UBR4-208ENST00000459947 PIP4K2BP78356 416 aa15.18■□□□□ 0.02
UBR4-208ENST00000459947 C1orf167Q5SNV9 1468 aa15.18■□□□□ 0.02
UBR4-208ENST00000459947 SBNO2Q9Y2G9 1366 aa15.17■□□□□ 0.02
UBR4-208ENST00000459947 WAPLQ7Z5K2 1190 aa15.16■□□□□ 0.02
UBR4-208ENST00000459947 PLEKHH1Q9ULM0 1364 aa15.16■□□□□ 0.02
UBR4-208ENST00000459947 TULP4Q9NRJ4 1543 aa15.16■□□□□ 0.02
UBR4-208ENST00000459947 CARD11Q9BXL7 1154 aa15.15■□□□□ 0.02
UBR4-208ENST00000459947 ITSN1Q15811 1721 aa15.15■□□□□ 0.02
UBR4-208ENST00000459947 NBPF1Q3BBV0 1214 aa15.15■□□□□ 0.02
UBR4-208ENST00000459947 RBM33Q96EV2 1170 aaKnown RBP15.15■□□□□ 0.02
UBR4-208ENST00000459947 NHSL1Q5SYE7 1610 aa15.14■□□□□ 0.01
UBR4-208ENST00000459947 QRICH2Q9H0J4 1663 aa15.14■□□□□ 0.01
UBR4-208ENST00000459947 NBPF8Q3BBV2 869 aa15.14■□□□□ 0.01
UBR4-208ENST00000459947 PHLPP1O60346 1717 aa15.13■□□□□ 0.01
UBR4-208ENST00000459947 WASLO00401 505 aaPredicted RBP15.13■□□□□ 0.01
UBR4-208ENST00000459947 NPHP3Q7Z494 1330 aa15.12■□□□□ 0.01
UBR4-208ENST00000459947 BRINP3Q76B58 766 aa15.12■□□□□ 0.01
UBR4-208ENST00000459947 EVC2Q86UK5 1308 aa15.11■□□□□ 0.01
UBR4-208ENST00000459947 PUS7Q96PZ0 661 aaKnown RBP15.11■□□□□ 0.01
UBR4-208ENST00000459947 MINK1Q8N4C8 1332 aaPredicted RBP15.11■□□□□ 0.01
UBR4-208ENST00000459947 BRD4O60885 1362 aaPredicted RBP15.09■□□□□ 0.01
UBR4-208ENST00000459947 JCADQ9P266 1359 aa15.09■□□□□ 0.01
UBR4-208ENST00000459947 HSPA1LP34931 641 aa15.09■□□□□ 0.01
UBR4-208ENST00000459947 COL16A1Q07092 1604 aaPredicted RBP15.08■□□□□ 0
UBR4-208ENST00000459947 PSME1Q06323 249 aa15.08■□□□□ 0
UBR4-208ENST00000459947 SAFB2Q14151 953 aaKnown RBP eCLIP15.08■□□□□ 0
UBR4-208ENST00000459947 ATAD2Q6PL18 1390 aa15.08■□□□□ 0
UBR4-208ENST00000459947 PHF8Q9UPP1 1060 aa15.07■□□□□ 0
UBR4-208ENST00000459947 ESCO1Q5FWF5 840 aa15.07■□□□□ 0
UBR4-208ENST00000459947 LRRC59Q96AG4 307 aaKnown RBP15.07■□□□□ 0
UBR4-208ENST00000459947 SHPRHQ149N8 1683 aa15.07■□□□□ 0
UBR4-208ENST00000459947 CDCA8Q53HL2 280 aa15.06■□□□□ 0
UBR4-208ENST00000459947 CDK19Q9BWU1 502 aa15.05■□□□□ 0
UBR4-208ENST00000459947 TOPAZ1Q8N9V7 1692 aa15.05■□□□□ 0
UBR4-208ENST00000459947 SPATA31A6Q5VVP1 1343 aa15.05■□□□□ -0
UBR4-208ENST00000459947 ATP7BP35670 1465 aa15.05■□□□□ -0
UBR4-208ENST00000459947 SOS2Q07890 1332 aaPredicted RBP15.05■□□□□ -0
UBR4-208ENST00000459947 USP47Q96K76 1375 aa15.04■□□□□ -0
UBR4-208ENST00000459947 NINLQ9Y2I6 1382 aa15.04■□□□□ -0
UBR4-208ENST00000459947 USP32Q8NFA0 1604 aa15.04■□□□□ -0
UBR4-208ENST00000459947 SBNO1A3KN83 1393 aa15.04■□□□□ -0
UBR4-208ENST00000459947 CCDC61Q9Y6R9 512 aa15.04■□□□□ -0
UBR4-208ENST00000459947 SRPK2P78362 688 aaKnown RBP15.03■□□□□ -0
UBR4-208ENST00000459947 NUDT16Q96DE0 195 aaKnown RBP15.03■□□□□ -0
UBR4-208ENST00000459947 PLEKHG3A1L390 1219 aa15.02□□□□□ -0.01
UBR4-208ENST00000459947 HIRIP3Q9BW71 556 aaPredicted RBP15.02□□□□□ -0.01
UBR4-208ENST00000459947 ORAI2Q96SN7 254 aa15.01□□□□□ -0.01
UBR4-208ENST00000459947 PXDNQ92626 1479 aa15.01□□□□□ -0.01
UBR4-208ENST00000459947 ARHGEF10O15013 1369 aa15.01□□□□□ -0.01
UBR4-208ENST00000459947 TMF1P82094 1093 aa15□□□□□ -0.01
UBR4-208ENST00000459947 COL22A1Q8NFW1 1626 aaPredicted RBP15□□□□□ -0.01
UBR4-208ENST00000459947 POLR3AO14802 1390 aaPredicted RBP15□□□□□ -0.01
UBR4-208ENST00000459947 EIF4G2P78344 907 aaKnown RBP eCLIP14.99□□□□□ -0.01
UBR4-208ENST00000459947 NGDNQ8NEJ9 315 aaKnown RBP14.99□□□□□ -0.01
UBR4-208ENST00000459947 RGPD8O14715 1765 aaPredicted RBP14.99□□□□□ -0.01
UBR4-208ENST00000459947 PRR36Q9H6K5 1346 aa14.99□□□□□ -0.01
UBR4-208ENST00000459947 TNS3Q68CZ2 1445 aa14.98□□□□□ -0.01
UBR4-208ENST00000459947 KRT28Q7Z3Y7 464 aa14.98□□□□□ -0.01
UBR4-208ENST00000459947 PPIP5K1Q6PFW1 1433 aa14.98□□□□□ -0.01
UBR4-208ENST00000459947 ZNF692Q9BU19 519 aaPredicted RBP14.98□□□□□ -0.01
UBR4-208ENST00000459947 PNPLA6Q8IY17 1366 aa14.97□□□□□ -0.01
UBR4-208ENST00000459947 NUTM2FA1L443 756 aa14.97□□□□□ -0.01
UBR4-208ENST00000459947 ZEB1P37275 1124 aaPredicted RBP14.97□□□□□ -0.01
UBR4-208ENST00000459947 ST20-MTHFSA0A0A6YYL1 179 aa14.96□□□□□ -0.01
UBR4-208ENST00000459947 FOXO3O43524 673 aa14.96□□□□□ -0.01
UBR4-208ENST00000459947 SPATA31A3Q5VYP0 1347 aa14.96□□□□□ -0.02
UBR4-208ENST00000459947 MED1Q15648 1581 aaPredicted RBP14.96□□□□□ -0.02
UBR4-208ENST00000459947 TRPM3Q9HCF6 1732 aaPredicted RBP14.94□□□□□ -0.02
UBR4-208ENST00000459947 TESK2Q96S53 571 aa14.94□□□□□ -0.02
UBR4-208ENST00000459947 CABP2Q9NPB3 220 aa14.94□□□□□ -0.02
UBR4-208ENST00000459947 TERF2IPQ9NYB0 399 aa14.93□□□□□ -0.02
UBR4-208ENST00000459947 HDGFL2Q7Z4V5 671 aaPredicted RBP14.93□□□□□ -0.02
UBR4-208ENST00000459947 AKAP12Q02952 1782 aa14.92□□□□□ -0.02
UBR4-208ENST00000459947 ACEP12821 1306 aa14.92□□□□□ -0.02
UBR4-208ENST00000459947 PMFBP1Q8TBY8 1022 aa14.92□□□□□ -0.02
UBR4-208ENST00000459947 TTC21AQ8NDW8 1320 aa14.92□□□□□ -0.02
UBR4-208ENST00000459947 ALS2Q96Q42 1657 aa14.91□□□□□ -0.02
UBR4-208ENST00000459947 USP6P35125 1406 aa14.9□□□□□ -0.02
UBR4-208ENST00000459947 MEX3CQ5U5Q3 659 aaKnown RBP14.9□□□□□ -0.02
UBR4-208ENST00000459947 PHF23Q9BUL5 403 aaPredicted RBP14.9□□□□□ -0.02
UBR4-208ENST00000459947 CABP1Q9NZU7 370 aa14.89□□□□□ -0.03
UBR4-208ENST00000459947 MON2Q7Z3U7 1717 aa14.89□□□□□ -0.03
UBR4-208ENST00000459947 CPSF1Q10570 1443 aaKnown RBP14.88□□□□□ -0.03
UBR4-208ENST00000459947 HSPA5P11021 654 aaKnown RBP14.88□□□□□ -0.03
UBR4-208ENST00000459947 HAP1P54257 671 aaPredicted RBP14.87□□□□□ -0.03
UBR4-208ENST00000459947 EDC4Q6P2E9 1401 aaKnown RBP14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms