RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 TMEM132EQ6IEE7 984 aa17.69■□□□□ 0.42
USP40-210ENST00000454354 SIRT1Q96EB6 747 aa17.68■□□□□ 0.42
USP40-210ENST00000454354 RGPD8O14715 1765 aaPredicted RBP17.68■□□□□ 0.42
USP40-210ENST00000454354 PLEKHH1Q9ULM0 1364 aa17.67■□□□□ 0.42
USP40-210ENST00000454354 STK26Q9P289 416 aa17.67■□□□□ 0.42
USP40-210ENST00000454354 KIF1AQ12756 1690 aa17.67■□□□□ 0.42
USP40-210ENST00000454354 KIAA1210Q9ULL0 1709 aa17.67■□□□□ 0.42
USP40-210ENST00000454354 DHX57Q6P158 1386 aaKnown RBP17.66■□□□□ 0.42
USP40-210ENST00000454354 ADGRB2O60241 1585 aa17.66■□□□□ 0.42
USP40-210ENST00000454354 COL22A1Q8NFW1 1626 aaPredicted RBP17.66■□□□□ 0.42
USP40-210ENST00000454354 CFAP70Q5T0N1 1121 aa17.66■□□□□ 0.42
USP40-210ENST00000454354 WAPLQ7Z5K2 1190 aa17.66■□□□□ 0.42
USP40-210ENST00000454354 STAC3Q96MF2 364 aa17.66■□□□□ 0.42
USP40-210ENST00000454354 ARHGEF28Q8N1W1 1705 aaKnown RBP17.64■□□□□ 0.41
USP40-210ENST00000454354 ORAI2Q96SN7 254 aa17.64■□□□□ 0.41
USP40-210ENST00000454354 PNPLA6Q8IY17 1366 aa17.64■□□□□ 0.41
USP40-210ENST00000454354 LRRC59Q96AG4 307 aaKnown RBP17.63■□□□□ 0.41
USP40-210ENST00000454354 SOS2Q07890 1332 aaPredicted RBP17.63■□□□□ 0.41
USP40-210ENST00000454354 PXDNQ92626 1479 aa17.63■□□□□ 0.41
USP40-210ENST00000454354 DCAF11Q8TEB1 546 aa17.62■□□□□ 0.41
USP40-210ENST00000454354 DDX17Q92841 729 aaKnown RBP17.62■□□□□ 0.41
USP40-210ENST00000454354 USP32Q8NFA0 1604 aa17.61■□□□□ 0.41
USP40-210ENST00000454354 POTEAQ6S8J7 498 aa17.6■□□□□ 0.41
USP40-210ENST00000454354 MARF1Q9Y4F3 1742 aaKnown RBP17.6■□□□□ 0.41
USP40-210ENST00000454354 NPHP3Q7Z494 1330 aa17.58■□□□□ 0.4
USP40-210ENST00000454354 KDM2AQ9Y2K7 1162 aa17.58■□□□□ 0.4
USP40-210ENST00000454354 ESCO1Q5FWF5 840 aa17.57■□□□□ 0.4
USP40-210ENST00000454354 PRAM1Q96QH2 718 aa17.57■□□□□ 0.4
USP40-210ENST00000454354 MEX3CQ5U5Q3 659 aaKnown RBP17.56■□□□□ 0.4
USP40-210ENST00000454354 ANKARQ7Z5J8 1434 aa17.55■□□□□ 0.4
USP40-210ENST00000454354 ITSN1Q15811 1721 aa17.54■□□□□ 0.4
USP40-210ENST00000454354 NUTM2BA6NNL0 878 aaPredicted RBP17.53■□□□□ 0.4
USP40-210ENST00000454354 NUTM2EB1AL46 878 aaPredicted RBP17.53■□□□□ 0.4
USP40-210ENST00000454354 ZNF772Q68DY9 489 aaPredicted RBP17.53■□□□□ 0.4
USP40-210ENST00000454354 NUTM2AQ8IVF1 878 aaPredicted RBP17.53■□□□□ 0.4
USP40-210ENST00000454354 TULP4Q9NRJ4 1543 aa17.52■□□□□ 0.4
USP40-210ENST00000454354 NUTM2FA1L443 756 aa17.52■□□□□ 0.4
USP40-210ENST00000454354 POGKQ9P215 609 aa17.52■□□□□ 0.4
USP40-210ENST00000454354 TRAK1Q9UPV9 953 aa17.52■□□□□ 0.4
USP40-210ENST00000454354 SAFB2Q14151 953 aaKnown RBP eCLIP17.51■□□□□ 0.39
USP40-210ENST00000454354 ABCA3Q99758 1704 aa17.51■□□□□ 0.39
USP40-210ENST00000454354 TRPM3Q9HCF6 1732 aaPredicted RBP17.5■□□□□ 0.39
USP40-210ENST00000454354 FOXO3O43524 673 aa17.5■□□□□ 0.39
USP40-210ENST00000454354 AFF2P51816 1311 aa17.49■□□□□ 0.39
USP40-210ENST00000454354 TRPM1Q7Z4N2 1603 aa17.49■□□□□ 0.39
USP40-210ENST00000454354 EIF3AQ14152 1382 aaKnown RBP17.49■□□□□ 0.39
USP40-210ENST00000454354 TOPAZ1Q8N9V7 1692 aa17.48■□□□□ 0.39
USP40-210ENST00000454354 CDK12Q9NYV4 1490 aaPredicted RBP17.48■□□□□ 0.39
USP40-210ENST00000454354 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.47■□□□□ 0.39
USP40-210ENST00000454354 PHF8Q9UPP1 1060 aa17.47■□□□□ 0.39
USP40-210ENST00000454354 ALS2Q96Q42 1657 aa17.47■□□□□ 0.39
USP40-210ENST00000454354 TNS3Q68CZ2 1445 aa17.47■□□□□ 0.39
USP40-210ENST00000454354 XPCQ01831 940 aaPredicted RBP17.46■□□□□ 0.39
USP40-210ENST00000454354 C8orf37Q96NL8 207 aa17.46■□□□□ 0.39
USP40-210ENST00000454354 SPATA31A3Q5VYP0 1347 aa17.46■□□□□ 0.38
USP40-210ENST00000454354 ATP7BP35670 1465 aa17.45■□□□□ 0.38
USP40-210ENST00000454354 QRICH2Q9H0J4 1663 aa17.45■□□□□ 0.38
USP40-210ENST00000454354 MINK1Q8N4C8 1332 aaPredicted RBP17.45■□□□□ 0.38
USP40-210ENST00000454354 SBNO1A3KN83 1393 aa17.44■□□□□ 0.38
USP40-210ENST00000454354 HIRIP3Q9BW71 556 aaPredicted RBP17.44■□□□□ 0.38
USP40-210ENST00000454354 WASLO00401 505 aaPredicted RBP17.43■□□□□ 0.38
USP40-210ENST00000454354 KRT28Q7Z3Y7 464 aa17.43■□□□□ 0.38
USP40-210ENST00000454354 CRYBG1Q9Y4K1 1723 aa17.43■□□□□ 0.38
USP40-210ENST00000454354 PRR36Q9H6K5 1346 aa17.43■□□□□ 0.38
USP40-210ENST00000454354 ADAMTS2O95450 1211 aa17.42■□□□□ 0.38
USP40-210ENST00000454354 RXRBP28702 533 aa17.41■□□□□ 0.38
USP40-210ENST00000454354 PSME1Q06323 249 aa17.41■□□□□ 0.38
USP40-210ENST00000454354 NBPF1Q3BBV0 1214 aa17.41■□□□□ 0.38
USP40-210ENST00000454354 L3MBTL2Q969R5 705 aa17.41■□□□□ 0.38
USP40-210ENST00000454354 PLCH1Q4KWH8 1693 aa17.41■□□□□ 0.38
USP40-210ENST00000454354 NWD2Q9ULI1 1742 aa17.41■□□□□ 0.38
USP40-210ENST00000454354 FNBP4Q8N3X1 1017 aaPredicted RBP17.4■□□□□ 0.38
USP40-210ENST00000454354 NGLY1Q96IV0 654 aa17.4■□□□□ 0.38
USP40-210ENST00000454354 SIN3AQ96ST3 1273 aa17.4■□□□□ 0.38
USP40-210ENST00000454354 ARHGEF10O15013 1369 aa17.4■□□□□ 0.38
USP40-210ENST00000454354 ATRNO75882 1429 aa17.39■□□□□ 0.38
USP40-210ENST00000454354 PMFBP1Q8TBY8 1022 aa17.38■□□□□ 0.37
USP40-210ENST00000454354 RGS12O14924 1447 aa17.38■□□□□ 0.37
USP40-210ENST00000454354 BCL9LQ86UU0 1499 aa17.37■□□□□ 0.37
USP40-210ENST00000454354 RBM6P78332 1123 aaKnown RBP17.37■□□□□ 0.37
USP40-210ENST00000454354 QTRT2Q9H974 415 aaKnown RBP17.37■□□□□ 0.37
USP40-210ENST00000454354 SLIT2O94813 1529 aa17.37■□□□□ 0.37
USP40-210ENST00000454354 TRIM26Q12899 539 aaPredicted RBP17.36■□□□□ 0.37
USP40-210ENST00000454354 USP21Q9UK80 565 aa17.36■□□□□ 0.37
USP40-210ENST00000454354 GPRASP1Q5JY77 1395 aa17.35■□□□□ 0.37
USP40-210ENST00000454354 NRAPQ86VF7 1730 aa17.34■□□□□ 0.37
USP40-210ENST00000454354 NUDT16Q96DE0 195 aaKnown RBP17.34■□□□□ 0.37
USP40-210ENST00000454354 CENPJQ9HC77 1338 aaPredicted RBP17.34■□□□□ 0.37
USP40-210ENST00000454354 PHRF1Q9P1Y6 1649 aaKnown RBP17.34■□□□□ 0.37
USP40-210ENST00000454354 TRPC5Q9UL62 973 aaPredicted RBP17.34■□□□□ 0.37
USP40-210ENST00000454354 POLR3AO14802 1390 aaPredicted RBP17.33■□□□□ 0.36
USP40-210ENST00000454354 NEUROD1Q13562 356 aa17.33■□□□□ 0.36
USP40-210ENST00000454354 CDK19Q9BWU1 502 aa17.33■□□□□ 0.36
USP40-210ENST00000454354 COL14A1Q05707 1796 aaKnown RBP17.32■□□□□ 0.36
USP40-210ENST00000454354 GLI3P10071 1580 aa17.32■□□□□ 0.36
USP40-210ENST00000454354 ROCK2O75116 1388 aaKnown RBP17.3■□□□□ 0.36
USP40-210ENST00000454354 NGDNQ8NEJ9 315 aaKnown RBP17.3■□□□□ 0.36
USP40-210ENST00000454354 CABLES1Q8TDN4 633 aa17.29■□□□□ 0.36
USP40-210ENST00000454354 CCDC61Q9Y6R9 512 aa17.29■□□□□ 0.36
USP40-210ENST00000454354 PLEKHG3A1L390 1219 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms