RNA–Protein interactions for RNA: ENST00000452489.6

PTPA-223, Transcript of protein phosphatase 2 phosphatase activator, humanhuman

TSL 1 (best) BASIC

Gene PTPA, Length 2,526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPA-223ENST00000452489 BCL2L13Q9BXK5 485 aa23.2■■□□□ 1.3
PTPA-223ENST00000452489 ABCA10Q8WWZ4 1543 aa23.19■■□□□ 1.3
PTPA-223ENST00000452489 ERBINQ96RT1 1412 aa23.18■■□□□ 1.3
PTPA-223ENST00000452489 FAM135AQ9P2D6 1515 aa23.17■■□□□ 1.3
PTPA-223ENST00000452489 SPDYE4A6NLX3 237 aa23.17■■□□□ 1.3
PTPA-223ENST00000452489 TAF7LQ5H9L4 462 aa23.17■■□□□ 1.3
PTPA-223ENST00000452489 KNSTRNQ9Y448 316 aa23.17■■□□□ 1.3
PTPA-223ENST00000452489 CCDC39Q9UFE4 941 aa23.16■■□□□ 1.3
PTPA-223ENST00000452489 TRPM1Q7Z4N2 1603 aa23.16■■□□□ 1.3
PTPA-223ENST00000452489 CEP170Q5SW79 1584 aa23.16■■□□□ 1.3
PTPA-223ENST00000452489 MAGI2Q86UL8 1455 aa23.16■■□□□ 1.3
PTPA-223ENST00000452489 NUP155O75694 1391 aa23.16■■□□□ 1.3
PTPA-223ENST00000452489 RARSP54136 660 aaKnown RBP23.16■■□□□ 1.3
PTPA-223ENST00000452489 MCTP1Q6DN14 999 aa23.16■■□□□ 1.3
PTPA-223ENST00000452489 PRAG1Q86YV5 1406 aa23.15■■□□□ 1.3
PTPA-223ENST00000452489 DNTTIP2Q5QJE6 756 aaKnown RBP23.15■■□□□ 1.3
PTPA-223ENST00000452489 GAS2L2Q8NHY3 880 aa23.15■■□□□ 1.3
PTPA-223ENST00000452489 KIF2CQ99661 725 aa23.15■■□□□ 1.3
PTPA-223ENST00000452489 CGNQ9P2M7 1197 aaKnown RBP23.15■■□□□ 1.3
PTPA-223ENST00000452489 AMER1Q5JTC6 1135 aaPredicted RBP23.14■■□□□ 1.29
PTPA-223ENST00000452489 TMF1P82094 1093 aa23.13■■□□□ 1.29
PTPA-223ENST00000452489 CLEC17AQ6ZS10 378 aa23.13■■□□□ 1.29
PTPA-223ENST00000452489 RBM27Q9P2N5 1060 aaKnown RBP23.13■■□□□ 1.29
PTPA-223ENST00000452489 KDM5DQ9BY66 1539 aa23.12■■□□□ 1.29
PTPA-223ENST00000452489 RBM42Q9BTD8 480 aaKnown RBP23.12■■□□□ 1.29
PTPA-223ENST00000452489 PLXNC1O60486 1568 aa23.12■■□□□ 1.29
PTPA-223ENST00000452489 K7ELQ4 463 aaPredicted RBP23.12■■□□□ 1.29
PTPA-223ENST00000452489 KIAA2012Q0VF49 1180 aa23.11■■□□□ 1.29
PTPA-223ENST00000452489 RGL3Q3MIN7 710 aa23.11■■□□□ 1.29
PTPA-223ENST00000452489 ABCC2Q92887 1545 aa23.11■■□□□ 1.29
PTPA-223ENST00000452489 LMBRD1Q9NUN5 540 aa23.1■■□□□ 1.29
PTPA-223ENST00000452489 WWC1Q8IX03 1113 aa23.09■■□□□ 1.29
PTPA-223ENST00000452489 ANKRD50Q9ULJ7 1429 aa23.09■■□□□ 1.29
PTPA-223ENST00000452489 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP23.09■■□□□ 1.29
PTPA-223ENST00000452489 PAXIP1Q6ZW49 1069 aaPredicted RBP23.08■■□□□ 1.28
PTPA-223ENST00000452489 POLA1P09884 1462 aaPredicted RBP23.07■■□□□ 1.28
PTPA-223ENST00000452489 AK9Q5TCS8 1911 aa23.07■■□□□ 1.28
PTPA-223ENST00000452489 RNF214Q8ND24 703 aa23.07■■□□□ 1.28
PTPA-223ENST00000452489 GPRASP1Q5JY77 1395 aa23.06■■□□□ 1.28
PTPA-223ENST00000452489 PIK3C2GO75747 1445 aa23.06■■□□□ 1.28
PTPA-223ENST00000452489 PTMAP06454 111 aaKnown RBP23.06■■□□□ 1.28
PTPA-223ENST00000452489 MPNDQ8N594 471 aa23.06■■□□□ 1.28
PTPA-223ENST00000452489 CADPSQ9ULU8 1353 aa23.06■■□□□ 1.28
PTPA-223ENST00000452489 WDR7Q9Y4E6 1490 aa23.06■■□□□ 1.28
PTPA-223ENST00000452489 ADGBQ8N7X0 1667 aa23.06■■□□□ 1.28
PTPA-223ENST00000452489 GTF2F1P35269 517 aaKnown RBP eCLIP23.06■■□□□ 1.286e-11■■■■■ 32.8
PTPA-223ENST00000452489 PRIMPOLQ96LW4 560 aa23.06■■□□□ 1.28
PTPA-223ENST00000452489 ARHGAP31Q2M1Z3 1444 aa23.05■■□□□ 1.28
PTPA-223ENST00000452489 MAPK8IP2Q13387 824 aaPredicted RBP23.05■■□□□ 1.28
PTPA-223ENST00000452489 MVPQ14764 893 aaKnown RBP23.05■■□□□ 1.28
PTPA-223ENST00000452489 NEUROD2Q15784 382 aa23.05■■□□□ 1.28
PTPA-223ENST00000452489 GPT2Q8TD30 523 aa23.05■■□□□ 1.28
PTPA-223ENST00000452489 ZNF777Q9ULD5 760 aaPredicted RBP23.05■■□□□ 1.28
PTPA-223ENST00000452489 PRDM15P57071 1507 aaPredicted RBP23.04■■□□□ 1.28
PTPA-223ENST00000452489 TAF3Q5VWG9 929 aa23.04■■□□□ 1.28
PTPA-223ENST00000452489 BCL2L12Q9HB09 334 aa23.04■■□□□ 1.28
PTPA-223ENST00000452489 SYCE3A1L190 88 aa23.04■■□□□ 1.28
PTPA-223ENST00000452489 U2AF2P26368 475 aaKnown RBP eCLIP23.03■■□□□ 1.28
PTPA-223ENST00000452489 HMGN5P82970 282 aaKnown RBP23.03■■□□□ 1.28
PTPA-223ENST00000452489 KIF3AQ9Y496 699 aa23.03■■□□□ 1.28
PTPA-223ENST00000452489 PKP1Q13835 747 aa23.03■■□□□ 1.28
PTPA-223ENST00000452489 C17orf53Q8N3J3 647 aaPredicted RBP23.02■■□□□ 1.28
PTPA-223ENST00000452489 PDCL2Q8N4E4 241 aa23.02■■□□□ 1.28
PTPA-223ENST00000452489 PRPF40AO75400 957 aaKnown RBP23.02■■□□□ 1.27
PTPA-223ENST00000452489 CDK11BP21127 795 aaKnown RBP23.02■■□□□ 1.27
PTPA-223ENST00000452489 ZNF771Q7L3S4 317 aaPredicted RBP23.02■■□□□ 1.27
PTPA-223ENST00000452489 RRP7AQ9Y3A4 280 aaKnown RBP23.02■■□□□ 1.27
PTPA-223ENST00000452489 ADGRL2O95490 1459 aa23.01■■□□□ 1.27
PTPA-223ENST00000452489 LRSAM1Q6UWE0 723 aa23.01■■□□□ 1.27
PTPA-223ENST00000452489 WDR62O43379 1518 aa23.01■■□□□ 1.27
PTPA-223ENST00000452489 TMEM63CQ9P1W3 806 aa23.01■■□□□ 1.27
PTPA-223ENST00000452489 EIF4G3O43432 1585 aaKnown RBP23■■□□□ 1.27
PTPA-223ENST00000452489 SHROOM2Q13796 1616 aa22.99■■□□□ 1.27
PTPA-223ENST00000452489 CFDP1Q9UEE9 299 aaPredicted RBP22.99■■□□□ 1.27
PTPA-223ENST00000452489 CHAMP1Q96JM3 812 aa22.99■■□□□ 1.27
PTPA-223ENST00000452489 NSFL1CQ9UNZ2 370 aaKnown RBP22.98■■□□□ 1.27
PTPA-223ENST00000452489 NOLC1Q14978 699 aaKnown RBP eCLIP22.98■■□□□ 1.27
PTPA-223ENST00000452489 IRX5P78411 483 aaPredicted RBP22.97■■□□□ 1.27
PTPA-223ENST00000452489 FTSJ3Q8IY81 847 aaKnown RBP22.97■■□□□ 1.27
PTPA-223ENST00000452489 HDAC1Q13547 482 aaPredicted RBP22.96■■□□□ 1.27
PTPA-223ENST00000452489 PIBF1Q8WXW3 757 aa22.96■■□□□ 1.27
PTPA-223ENST00000452489 KIF16BQ96L93 1317 aa22.96■■□□□ 1.27
PTPA-223ENST00000452489 LNPKQ9C0E8 428 aa22.96■■□□□ 1.27
PTPA-223ENST00000452489 ASXL1Q8IXJ9 1541 aa22.95■■□□□ 1.27
PTPA-223ENST00000452489 CYP2E1P05181 493 aaPredicted RBP22.95■■□□□ 1.26
PTPA-223ENST00000452489 DZIP1LQ8IYY4 767 aaKnown RBP22.93■■□□□ 1.26
PTPA-223ENST00000452489 NGEFQ8N5V2 710 aa22.93■■□□□ 1.26
PTPA-223ENST00000452489 TDRD9Q8NDG6 1382 aaKnown RBP22.93■■□□□ 1.26
PTPA-223ENST00000452489 ABCC10Q5T3U5 1492 aa22.93■■□□□ 1.26
PTPA-223ENST00000452489 DNMBPQ6XZF7 1577 aa22.93■■□□□ 1.26
PTPA-223ENST00000452489 KCNJ4P48050 445 aa22.92■■□□□ 1.26
PTPA-223ENST00000452489 A2MP01023 1474 aa22.92■■□□□ 1.26
PTPA-223ENST00000452489 NUCB2P80303 420 aa22.92■■□□□ 1.26
PTPA-223ENST00000452489 LAMC1P11047 1609 aa22.91■■□□□ 1.26
PTPA-223ENST00000452489 TOPBP1Q92547 1522 aa22.91■■□□□ 1.26
PTPA-223ENST00000452489 FANCD2Q9BXW9 1451 aa22.91■■□□□ 1.26
PTPA-223ENST00000452489 TTC12Q9H892 705 aaPredicted RBP22.91■■□□□ 1.26
PTPA-223ENST00000452489 ITSN2Q9NZM3 1697 aa22.91■■□□□ 1.26
PTPA-223ENST00000452489 ZKSCAN2Q63HK3 967 aa22.9■■□□□ 1.26
PTPA-223ENST00000452489 GRIN2AQ12879 1464 aa22.9■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms