RNA–Protein interactions for RNA: ENST00000449544.5

HCG18-238, Transcript of HLA complex group 18, human

TSL 2 BASIC

Gene HCG18, Length 4,262 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HCG18-238	ENST00000449544	SPG7	Q9UQ90	795 aa		11.04	□□□□□ -0.64
HCG18-238	ENST00000449544	PLEKHO1	Q53GL0	409 aa	Predicted RBP	11.03	□□□□□ -0.64
HCG18-238	ENST00000449544	KTN1	Q86UP2	1357 aa	Known RBP	11.03	□□□□□ -0.64
HCG18-238	ENST00000449544	KAT6B	Q8WYB5	2073 aa		11.03	□□□□□ -0.64
HCG18-238	ENST00000449544	SLC12A5	Q9H2X9	1139 aa		11.03	□□□□□ -0.64
HCG18-238	ENST00000449544	SENP3-EIF4A1	A0A087X0R7	540 aa		11.02	□□□□□ -0.64
HCG18-238	ENST00000449544	DIP2B	Q9P265	1576 aa		11.02	□□□□□ -0.65
HCG18-238	ENST00000449544	ARAP3	Q8WWN8	1544 aa		11.02	□□□□□ -0.65
HCG18-238	ENST00000449544	UGGT1	Q9NYU2	1555 aa		11.01	□□□□□ -0.65
HCG18-238	ENST00000449544	APBA3	O96018	575 aa		11.01	□□□□□ -0.65
HCG18-238	ENST00000449544	DIEXF	Q68CQ4	756 aa	Known RBP	11.01	□□□□□ -0.65
HCG18-238	ENST00000449544	PANK3	Q9H999	370 aa		11.01	□□□□□ -0.65
HCG18-238	ENST00000449544	STK32B	Q9NY57	414 aa		11.01	□□□□□ -0.65
HCG18-238	ENST00000449544	C14orf93	Q9H972	538 aa	Known RBP	11	□□□□□ -0.65
HCG18-238	ENST00000449544	CABP4	P57796	275 aa		11	□□□□□ -0.65
HCG18-238	ENST00000449544	ATAD2	Q6PL18	1390 aa		11	□□□□□ -0.65
HCG18-238	ENST00000449544	PTPN23	Q9H3S7	1636 aa		11	□□□□□ -0.65
HCG18-238	ENST00000449544	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	11	□□□□□ -0.65
HCG18-238	ENST00000449544	SCAF11	Q99590	1463 aa	Known RBP	11	□□□□□ -0.65
HCG18-238	ENST00000449544	ITSN2	Q9NZM3	1697 aa		10.99	□□□□□ -0.65
HCG18-238	ENST00000449544	ACE	P12821	1306 aa		10.99	□□□□□ -0.65
HCG18-238	ENST00000449544	TAF7L	Q5H9L4	462 aa		10.99	□□□□□ -0.65
HCG18-238	ENST00000449544	NLRP1	Q9C000	1473 aa		10.99	□□□□□ -0.65
HCG18-238	ENST00000449544	COL17A1	Q9UMD9	1497 aa	Predicted RBP	10.99	□□□□□ -0.65
HCG18-238	ENST00000449544	MPRIP	Q6WCQ1	1025 aa		10.99	□□□□□ -0.65
HCG18-238	ENST00000449544	AFF2	P51816	1311 aa		10.99	□□□□□ -0.65
HCG18-238	ENST00000449544	RBM6	P78332	1123 aa	Known RBP	10.98	□□□□□ -0.65
HCG18-238	ENST00000449544	CALD1	Q05682	793 aa	Known RBP	10.98	□□□□□ -0.65
HCG18-238	ENST00000449544	DIAPH1	O60610	1272 aa	Known RBP	10.98	□□□□□ -0.65
HCG18-238	ENST00000449544	ACSBG1	Q96GR2	724 aa		10.98	□□□□□ -0.65
HCG18-238	ENST00000449544	AK7	Q96M32	723 aa		10.98	□□□□□ -0.65
HCG18-238	ENST00000449544	STK31	Q9BXU1	1019 aa		10.98	□□□□□ -0.65
HCG18-238	ENST00000449544	TFCP2L1	Q9NZI6	479 aa		10.98	□□□□□ -0.65
HCG18-238	ENST00000449544	CHMP3	Q9Y3E7	222 aa		10.98	□□□□□ -0.65
HCG18-238	ENST00000449544	HSP90AB1	P08238	724 aa	Known RBP	10.97	□□□□□ -0.65
HCG18-238	ENST00000449544	LMOD3	Q0VAK6	560 aa		10.97	□□□□□ -0.65
HCG18-238	ENST00000449544	ZNF530	Q6P9A1	599 aa	Predicted RBP	10.97	□□□□□ -0.65
HCG18-238	ENST00000449544	FAM177B	A6PVY3	158 aa		10.97	□□□□□ -0.65
HCG18-238	ENST00000449544	FRAT2	O75474	233 aa	Predicted RBP	10.96	□□□□□ -0.65
HCG18-238	ENST00000449544	MYH16	Q9H6N6	1097 aa		10.96	□□□□□ -0.65
HCG18-238	ENST00000449544	TMOD3	Q9NYL9	352 aa		10.96	□□□□□ -0.65
HCG18-238	ENST00000449544	CFAP65	Q6ZU64	1925 aa	Known RBP	10.96	□□□□□ -0.66
HCG18-238	ENST00000449544	JCAD	Q9P266	1359 aa		10.96	□□□□□ -0.66
HCG18-238	ENST00000449544	USP47	Q96K76	1375 aa		10.95	□□□□□ -0.66
HCG18-238	ENST00000449544	HECW2	Q9P2P5	1572 aa		10.95	□□□□□ -0.66
HCG18-238	ENST00000449544	CFAP43	Q8NDM7	1665 aa		10.95	□□□□□ -0.66
HCG18-238	ENST00000449544	MYO5C	Q9NQX4	1742 aa		10.95	□□□□□ -0.66
HCG18-238	ENST00000449544	MTHFS	P49914	203 aa		10.95	□□□□□ -0.66
HCG18-238	ENST00000449544	HMOX1	P09601	288 aa		10.95	□□□□□ -0.66
HCG18-238	ENST00000449544	EIF2S2	P20042	333 aa	Known RBP	10.94	□□□□□ -0.66
HCG18-238	ENST00000449544	OS9	Q13438	667 aa	Predicted RBP	10.94	□□□□□ -0.66
HCG18-238	ENST00000449544	RRS1	Q15050	365 aa	Known RBP	10.94	□□□□□ -0.66
HCG18-238	ENST00000449544	GPR162	Q16538	588 aa		10.94	□□□□□ -0.66
HCG18-238	ENST00000449544	SAMD9	Q5K651	1589 aa		10.94	□□□□□ -0.66
HCG18-238	ENST00000449544	NAIP	Q13075	1403 aa		10.94	□□□□□ -0.66
HCG18-238	ENST00000449544	KRT27	Q7Z3Y8	459 aa		10.94	□□□□□ -0.66
HCG18-238	ENST00000449544	TTC37	Q6PGP7	1564 aa		10.94	□□□□□ -0.66
HCG18-238	ENST00000449544	HNRNPU	Q00839	825 aa	Known RBP eCLIP	10.94	□□□□□ -0.66
HCG18-238	ENST00000449544	NPAT	Q14207	1427 aa		10.94	□□□□□ -0.66
HCG18-238	ENST00000449544	ARHGEF10	O15013	1369 aa		10.94	□□□□□ -0.66
HCG18-238	ENST00000449544	PTCD1	O75127	700 aa	Known RBP	10.93	□□□□□ -0.66
HCG18-238	ENST00000449544	A2ML1	A8K2U0	1454 aa		10.93	□□□□□ -0.66
HCG18-238	ENST00000449544	ZPR1	O75312	459 aa		10.93	□□□□□ -0.66
HCG18-238	ENST00000449544	MAP3K1	Q13233	1512 aa		10.93	□□□□□ -0.66
HCG18-238	ENST00000449544	GC	P02774	474 aa		10.92	□□□□□ -0.66
HCG18-238	ENST00000449544	WWC3	Q9ULE0	1092 aa		10.92	□□□□□ -0.66
HCG18-238	ENST00000449544	C16orf71	Q8IYS4	520 aa	Predicted RBP	10.92	□□□□□ -0.66
HCG18-238	ENST00000449544	PHF14	O94880	888 aa		10.92	□□□□□ -0.66
HCG18-238	ENST00000449544	BRINP3	Q76B58	766 aa		10.92	□□□□□ -0.66
HCG18-238	ENST00000449544	NME9	Q86XW9	330 aa		10.92	□□□□□ -0.66
HCG18-238	ENST00000449544	CDCA7	Q9BWT1	371 aa	Predicted RBP	10.92	□□□□□ -0.66
HCG18-238	ENST00000449544	BICDL1	Q6ZP65	573 aa		10.92	□□□□□ -0.66
HCG18-238	ENST00000449544	GLI2	P10070	1586 aa		10.92	□□□□□ -0.66
HCG18-238	ENST00000449544	ANKRD24	Q8TF21	1146 aa		10.91	□□□□□ -0.66
HCG18-238	ENST00000449544	RRP7A	Q9Y3A4	280 aa	Known RBP	10.91	□□□□□ -0.66
HCG18-238	ENST00000449544	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	10.91	□□□□□ -0.66
HCG18-238	ENST00000449544	TCP11L2	Q8N4U5	519 aa		10.91	□□□□□ -0.66
HCG18-238	ENST00000449544	SEPT12	Q8IYM1	358 aa		10.91	□□□□□ -0.66
HCG18-238	ENST00000449544	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	10.91	□□□□□ -0.66
HCG18-238	ENST00000449544	C11orf95	C9JLR9	678 aa	Predicted RBP	10.9	□□□□□ -0.66
HCG18-238	ENST00000449544	FBXW7	Q969H0	707 aa		10.9	□□□□□ -0.66
HCG18-238	ENST00000449544	PLEKHG1	Q9ULL1	1385 aa		10.9	□□□□□ -0.66
HCG18-238	ENST00000449544	SHROOM2	Q13796	1616 aa		10.9	□□□□□ -0.67
HCG18-238	ENST00000449544	SULT6B1	Q6IMI4	303 aa		10.89	□□□□□ -0.67
HCG18-238	ENST00000449544	FAM196A	Q6ZSG2	479 aa		10.89	□□□□□ -0.67
HCG18-238	ENST00000449544	USHBP1	Q8N6Y0	703 aa		10.89	□□□□□ -0.67
HCG18-238	ENST00000449544	EFCAB6	Q5THR3	1501 aa		10.89	□□□□□ -0.67
HCG18-238	ENST00000449544	KDM5D	Q9BY66	1539 aa		10.89	□□□□□ -0.67
HCG18-238	ENST00000449544	SPATA31A6	Q5VVP1	1343 aa		10.89	□□□□□ -0.67
HCG18-238	ENST00000449544	IL2RB	P14784	551 aa		10.89	□□□□□ -0.67
HCG18-238	ENST00000449544	GAS2L2	Q8NHY3	880 aa		10.89	□□□□□ -0.67
HCG18-238	ENST00000449544	ABCC1	P33527	1531 aa		10.88	□□□□□ -0.67
HCG18-238	ENST00000449544	SAMD9L	Q8IVG5	1584 aa		10.88	□□□□□ -0.67
HCG18-238	ENST00000449544	TRIM37	O94972	964 aa		10.88	□□□□□ -0.67
HCG18-238	ENST00000449544	UNC5CL	Q8IV45	518 aa		10.88	□□□□□ -0.67
HCG18-238	ENST00000449544	ZCRB1	Q8TBF4	217 aa	Known RBP	10.88	□□□□□ -0.67
HCG18-238	ENST00000449544	SETD1B	Q9UPS6	1966 aa	Known RBP	10.88	□□□□□ -0.67
HCG18-238	ENST00000449544	RFC4	P35249	363 aa		10.88	□□□□□ -0.67
HCG18-238	ENST00000449544	NEXN	Q0ZGT2	675 aa		10.88	□□□□□ -0.67
HCG18-238	ENST00000449544	SMARCC1	Q92922	1105 aa	Predicted RBP	10.88	□□□□□ -0.67

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