RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 PNMA1Q8ND90 353 aa3.29□□□□□ -1.88
CCDC88A-208ENST00000444458 PHOX2BQ99453 314 aa3.29□□□□□ -1.88
CCDC88A-208ENST00000444458 CDHR5Q9HBB8 845 aa3.29□□□□□ -1.88
CCDC88A-208ENST00000444458 ANKRD33BA6NCL7 494 aa3.28□□□□□ -1.88
CCDC88A-208ENST00000444458 UBE2Q2Q8WVN8 375 aa3.28□□□□□ -1.88
CCDC88A-208ENST00000444458 EVI5O60447 810 aa3.28□□□□□ -1.88
CCDC88A-208ENST00000444458 METTL3Q86U44 580 aaKnown RBP3.28□□□□□ -1.88
CCDC88A-208ENST00000444458 TMA7Q9Y2S6 64 aaKnown RBP3.28□□□□□ -1.88
CCDC88A-208ENST00000444458 SOX11P35716 441 aa3.28□□□□□ -1.88
CCDC88A-208ENST00000444458 SRPK2P78362 688 aaKnown RBP3.28□□□□□ -1.88
CCDC88A-208ENST00000444458 TANGO6Q9C0B7 1094 aa3.28□□□□□ -1.88
CCDC88A-208ENST00000444458 MAFBQ9Y5Q3 323 aaPredicted RBP3.28□□□□□ -1.88
CCDC88A-208ENST00000444458 PTGER2P43116 358 aa3.27□□□□□ -1.89
CCDC88A-208ENST00000444458 C2orf72A6NCS6 295 aa3.27□□□□□ -1.89
CCDC88A-208ENST00000444458 MARCH6O60337 910 aa3.27□□□□□ -1.89
CCDC88A-208ENST00000444458 FOSBP53539 338 aa3.27□□□□□ -1.89
CCDC88A-208ENST00000444458 SPIRE2Q8WWL2 714 aa3.27□□□□□ -1.89
CCDC88A-208ENST00000444458 SLC34A2O95436 690 aa3.27□□□□□ -1.89
CCDC88A-208ENST00000444458 ABL1P00519 1130 aa3.27□□□□□ -1.89
CCDC88A-208ENST00000444458 QPCTQ16769 361 aa3.27□□□□□ -1.89
CCDC88A-208ENST00000444458 TMEM164Q5U3C3 297 aa3.27□□□□□ -1.89
CCDC88A-208ENST00000444458 DNAJC14Q6Y2X3 702 aaPredicted RBP3.27□□□□□ -1.89
CCDC88A-208ENST00000444458 HELBQ8NG08 1087 aaPredicted RBP3.27□□□□□ -1.89
CCDC88A-208ENST00000444458 NOVA2Q9UNW9 492 aaKnown RBP3.27□□□□□ -1.89
CCDC88A-208ENST00000444458 SERPINB4P48594 390 aa3.27□□□□□ -1.89
CCDC88A-208ENST00000444458 DNAJC2Q99543 621 aaKnown RBP3.27□□□□□ -1.89
CCDC88A-208ENST00000444458 SOWAHDA6NJG2 315 aa3.26□□□□□ -1.89
CCDC88A-208ENST00000444458 EIF4G2P78344 907 aaKnown RBP eCLIP3.26□□□□□ -1.89
CCDC88A-208ENST00000444458 RSBN1LQ6PCB5 846 aaPredicted RBP3.26□□□□□ -1.89
CCDC88A-208ENST00000444458 MICALL2Q8IY33 904 aa3.26□□□□□ -1.89
CCDC88A-208ENST00000444458 MOXD2PA6NHM9 499 aa3.26□□□□□ -1.89
CCDC88A-208ENST00000444458 SPTLC1O15269 473 aa3.26□□□□□ -1.89
CCDC88A-208ENST00000444458 IBSPP21815 317 aaPredicted RBP3.26□□□□□ -1.89
CCDC88A-208ENST00000444458 PRIM1P49642 420 aaKnown RBP3.26□□□□□ -1.89
CCDC88A-208ENST00000444458 RTL5Q5HYW3 569 aaPredicted RBP3.26□□□□□ -1.89
CCDC88A-208ENST00000444458 FBXO31Q5XUX0 539 aaPredicted RBP3.26□□□□□ -1.89
CCDC88A-208ENST00000444458 TBC1D9Q6ZT07 1266 aa3.26□□□□□ -1.89
CCDC88A-208ENST00000444458 DPH6Q7L8W6 267 aa3.26□□□□□ -1.89
CCDC88A-208ENST00000444458 RBM46Q8TBY0 533 aaKnown RBP3.26□□□□□ -1.89
CCDC88A-208ENST00000444458 CLSTN1O94985 981 aa3.26□□□□□ -1.89
CCDC88A-208ENST00000444458 LARP1Q6PKG0 1096 aaKnown RBP3.26□□□□□ -1.89
CCDC88A-208ENST00000444458 CABLES1Q8TDN4 633 aa3.26□□□□□ -1.89
CCDC88A-208ENST00000444458 STK32AQ8WU08 396 aa3.26□□□□□ -1.89
CCDC88A-208ENST00000444458 ALG2Q9H553 416 aa3.26□□□□□ -1.89
CCDC88A-208ENST00000444458 DDX11L8A8MPP1 907 aa3.25□□□□□ -1.89
CCDC88A-208ENST00000444458 MAPK1P28482 360 aa3.25□□□□□ -1.89
CCDC88A-208ENST00000444458 SULF1Q8IWU6 871 aa3.25□□□□□ -1.89
CCDC88A-208ENST00000444458 PRR7Q8TB68 274 aa3.25□□□□□ -1.89
CCDC88A-208ENST00000444458 L3MBTL3Q96JM7 780 aaPredicted RBP3.25□□□□□ -1.89
CCDC88A-208ENST00000444458 EPAS1Q99814 870 aa3.25□□□□□ -1.89
CCDC88A-208ENST00000444458 ZBTB3Q9H5J0 574 aa3.25□□□□□ -1.89
CCDC88A-208ENST00000444458 ATP9BO43861 1147 aa3.25□□□□□ -1.89
CCDC88A-208ENST00000444458 EN1Q05925 392 aaPredicted RBP3.25□□□□□ -1.89
CCDC88A-208ENST00000444458 GIMAP6Q6P9H5 292 aa3.25□□□□□ -1.89
CCDC88A-208ENST00000444458 UCN2Q96RP3 112 aa3.25□□□□□ -1.89
CCDC88A-208ENST00000444458 NDUFV2P19404 249 aa3.25□□□□□ -1.89
CCDC88A-208ENST00000444458 GTF2F1P35269 517 aaKnown RBP eCLIP3.25□□□□□ -1.89
CCDC88A-208ENST00000444458 GORABQ5T7V8 394 aa3.25□□□□□ -1.89
CCDC88A-208ENST00000444458 C9orf131Q5VYM1 1079 aa3.25□□□□□ -1.89
CCDC88A-208ENST00000444458 ZSCAN29Q8IWY8 852 aaPredicted RBP3.25□□□□□ -1.89
CCDC88A-208ENST00000444458 PXYLP1Q8TE99 480 aa3.25□□□□□ -1.89
CCDC88A-208ENST00000444458 ATP2B4P23634 1241 aa3.24□□□□□ -1.89
CCDC88A-208ENST00000444458 PADI6Q6TGC4 694 aa3.24□□□□□ -1.89
CCDC88A-208ENST00000444458 GLYCTKQ8IVS8 523 aa3.24□□□□□ -1.89
CCDC88A-208ENST00000444458 MICAL1Q8TDZ2 1067 aa3.24□□□□□ -1.89
CCDC88A-208ENST00000444458 MYH16Q9H6N6 1097 aa3.24□□□□□ -1.89
CCDC88A-208ENST00000444458 PCDHB15Q9Y5E8 787 aa3.24□□□□□ -1.89
CCDC88A-208ENST00000444458 GTF3C5Q9Y5Q8 519 aaPredicted RBP3.24□□□□□ -1.89
CCDC88A-208ENST00000444458 LILRB3O75022 631 aa3.24□□□□□ -1.89
CCDC88A-208ENST00000444458 IGBP1P78318 339 aa3.24□□□□□ -1.89
CCDC88A-208ENST00000444458 TAF7LQ5H9L4 462 aa3.24□□□□□ -1.89
CCDC88A-208ENST00000444458 FAM200AQ8TCP9 573 aa3.24□□□□□ -1.89
CCDC88A-208ENST00000444458 WDR3Q9UNX4 943 aaKnown RBP eCLIP3.24□□□□□ -1.89
CCDC88A-208ENST00000444458 hCG_2014768A0A024R1R8 64 aa3.24□□□□□ -1.89
CCDC88A-208ENST00000444458 SKIP12755 728 aa3.24□□□□□ -1.89
CCDC88A-208ENST00000444458 ATP2B1P20020 1258 aa3.24□□□□□ -1.89
CCDC88A-208ENST00000444458 ANAPC15P60006 121 aa3.24□□□□□ -1.89
CCDC88A-208ENST00000444458 TUSC1Q2TAM9 212 aa3.24□□□□□ -1.89
CCDC88A-208ENST00000444458 RDH13Q8NBN7 331 aa3.24□□□□□ -1.89
CCDC88A-208ENST00000444458 RBM19Q9Y4C8 960 aaKnown RBP3.24□□□□□ -1.89
CCDC88A-208ENST00000444458 CC2D2BQ6DHV5 1058 aa3.24□□□□□ -1.89
CCDC88A-208ENST00000444458 NPAS4Q8IUM7 802 aa3.24□□□□□ -1.89
CCDC88A-208ENST00000444458 NPDC1Q9NQX5 325 aaPredicted RBP3.24□□□□□ -1.89
CCDC88A-208ENST00000444458 CADPSQ9ULU8 1353 aa3.23□□□□□ -1.89
CCDC88A-208ENST00000444458 GNL2Q13823 731 aaKnown RBP3.23□□□□□ -1.89
CCDC88A-208ENST00000444458 EAPPQ56P03 285 aaPredicted RBP3.23□□□□□ -1.89
CCDC88A-208ENST00000444458 PMFBP1Q8TBY8 1022 aa3.23□□□□□ -1.89
CCDC88A-208ENST00000444458 GJD4Q96KN9 370 aaPredicted RBP3.23□□□□□ -1.89
CCDC88A-208ENST00000444458 H3BRB1 525 aa3.23□□□□□ -1.89
CCDC88A-208ENST00000444458 RASA1P20936 1047 aa3.23□□□□□ -1.89
CCDC88A-208ENST00000444458 SSFA2P28290 1259 aa3.23□□□□□ -1.89
CCDC88A-208ENST00000444458 CTDSPL2Q05D32 466 aa3.23□□□□□ -1.89
CCDC88A-208ENST00000444458 DPY19L2Q6NUT2 758 aa3.23□□□□□ -1.89
CCDC88A-208ENST00000444458 NOP9Q86U38 636 aaKnown RBP3.23□□□□□ -1.89
CCDC88A-208ENST00000444458 TUT1Q9H6E5 874 aaKnown RBP3.23□□□□□ -1.89
CCDC88A-208ENST00000444458 CCSER2Q9H7U1 834 aa3.23□□□□□ -1.89
CCDC88A-208ENST00000444458 MRS2Q9HD23 443 aa3.23□□□□□ -1.89
CCDC88A-208ENST00000444458 ADGRG1Q9Y653 693 aa3.23□□□□□ -1.89
CCDC88A-208ENST00000444458 TICAM2Q86XR7 235 aa3.23□□□□□ -1.89
CCDC88A-208ENST00000444458 SLAIN1Q8ND83 568 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 91 ms