RNA–Protein interactions for RNA: ENST00000439977.6

HERPUD1-204, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene HERPUD1, Length 2,946 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-204ENST00000439977 PPRC1Q5VV67 1664 aaKnown RBP17.51■□□□□ 0.39
HERPUD1-204ENST00000439977 POLR3AO14802 1390 aaPredicted RBP17.51■□□□□ 0.39
HERPUD1-204ENST00000439977 MROH2AA6NES4 1674 aa17.5■□□□□ 0.39
HERPUD1-204ENST00000439977 PPM1GO15355 546 aaPredicted RBP17.5■□□□□ 0.39
HERPUD1-204ENST00000439977 RLBP1P12271 317 aa17.5■□□□□ 0.39
HERPUD1-204ENST00000439977 RARSP54136 660 aaKnown RBP17.49■□□□□ 0.39
HERPUD1-204ENST00000439977 SEC24BO95487 1268 aa17.48■□□□□ 0.39
HERPUD1-204ENST00000439977 CGNL1Q0VF96 1302 aa17.48■□□□□ 0.39
HERPUD1-204ENST00000439977 CD109Q6YHK3 1445 aa17.48■□□□□ 0.39
HERPUD1-204ENST00000439977 ZNF518AQ6AHZ1 1483 aa17.48■□□□□ 0.39
HERPUD1-204ENST00000439977 KIDINS220Q9ULH0 1771 aa17.48■□□□□ 0.39
HERPUD1-204ENST00000439977 PDE3AQ14432 1141 aa17.47■□□□□ 0.39
HERPUD1-204ENST00000439977 U2SURPO15042 1029 aaKnown RBP17.47■□□□□ 0.39
HERPUD1-204ENST00000439977 SRPK2P78362 688 aaKnown RBP17.47■□□□□ 0.39
HERPUD1-204ENST00000439977 NFKBIBQ15653 356 aa17.47■□□□□ 0.39
HERPUD1-204ENST00000439977 GGNBP2Q9H3C7 697 aa17.47■□□□□ 0.39
HERPUD1-204ENST00000439977 CFAP53Q96M91 514 aa17.46■□□□□ 0.39
HERPUD1-204ENST00000439977 KIF1BO60333 1816 aa17.46■□□□□ 0.39
HERPUD1-204ENST00000439977 TSR2Q969E8 191 aaKnown RBP17.46■□□□□ 0.39
HERPUD1-204ENST00000439977 PCDHB15Q9Y5E8 787 aa17.46■□□□□ 0.39
HERPUD1-204ENST00000439977 SBNO2Q9Y2G9 1366 aa17.46■□□□□ 0.39
HERPUD1-204ENST00000439977 IDI1Q13907 227 aa17.45■□□□□ 0.38
HERPUD1-204ENST00000439977 NRXN1Q9ULB1 1477 aa17.45■□□□□ 0.38
HERPUD1-204ENST00000439977 KIAA1210Q9ULL0 1709 aa17.45■□□□□ 0.38
HERPUD1-204ENST00000439977 EVC2Q86UK5 1308 aa17.44■□□□□ 0.38
HERPUD1-204ENST00000439977 RTN4Q9NQC3 1192 aaKnown RBP17.44■□□□□ 0.38
HERPUD1-204ENST00000439977 IL27Q8NEV9 243 aa17.44■□□□□ 0.38
HERPUD1-204ENST00000439977 VGFO15240 615 aaPredicted RBP17.43■□□□□ 0.38
HERPUD1-204ENST00000439977 USP35Q9P2H5 1018 aa17.43■□□□□ 0.38
HERPUD1-204ENST00000439977 MINK1Q8N4C8 1332 aaPredicted RBP17.43■□□□□ 0.38
HERPUD1-204ENST00000439977 ADGRB3O60242 1522 aa17.42■□□□□ 0.38
HERPUD1-204ENST00000439977 NGEFQ8N5V2 710 aa17.42■□□□□ 0.38
HERPUD1-204ENST00000439977 POGZQ7Z3K3 1410 aa17.4■□□□□ 0.38
HERPUD1-204ENST00000439977 FBLN1P23142 703 aa17.4■□□□□ 0.38
HERPUD1-204ENST00000439977 OSCARQ8IYS5 282 aa17.4■□□□□ 0.38
HERPUD1-204ENST00000439977 ADGRB1O14514 1584 aa17.4■□□□□ 0.38
HERPUD1-204ENST00000439977 FRAT2O75474 233 aaPredicted RBP17.39■□□□□ 0.37
HERPUD1-204ENST00000439977 WDR63Q8IWG1 891 aa17.39■□□□□ 0.37
HERPUD1-204ENST00000439977 RPGRIP1LQ68CZ1 1315 aa17.39■□□□□ 0.37
HERPUD1-204ENST00000439977 PHF23Q9BUL5 403 aaPredicted RBP17.38■□□□□ 0.37
HERPUD1-204ENST00000439977 FRMPD1Q5SYB0 1578 aa17.38■□□□□ 0.37
HERPUD1-204ENST00000439977 USP19O94966 1318 aa17.38■□□□□ 0.37
HERPUD1-204ENST00000439977 NEURL4Q96JN8 1562 aa17.38■□□□□ 0.37
HERPUD1-204ENST00000439977 PRAM1Q96QH2 718 aa17.37■□□□□ 0.37
HERPUD1-204ENST00000439977 LMTK2Q8IWU2 1503 aa17.37■□□□□ 0.37
HERPUD1-204ENST00000439977 PDZRN3Q9UPQ7 1066 aa17.37■□□□□ 0.37
HERPUD1-204ENST00000439977 IFT172Q9UG01 1749 aa17.37■□□□□ 0.37
HERPUD1-204ENST00000439977 EXOSC9Q06265 439 aaKnown RBP17.37■□□□□ 0.37
HERPUD1-204ENST00000439977 FBXO31Q5XUX0 539 aaPredicted RBP17.37■□□□□ 0.37
HERPUD1-204ENST00000439977 POGKQ9P215 609 aa17.37■□□□□ 0.37
HERPUD1-204ENST00000439977 FTSJ3Q8IY81 847 aaKnown RBP17.36■□□□□ 0.37
HERPUD1-204ENST00000439977 MYH16Q9H6N6 1097 aa17.36■□□□□ 0.37
HERPUD1-204ENST00000439977 ANKRD36BQ8N2N9 1353 aa17.36■□□□□ 0.37
HERPUD1-204ENST00000439977 QRICH2Q9H0J4 1663 aa17.36■□□□□ 0.37
HERPUD1-204ENST00000439977 SLKQ9H2G2 1235 aaPredicted RBP17.35■□□□□ 0.37
HERPUD1-204ENST00000439977 A0A1W2PP64 1363 aa17.35■□□□□ 0.37
HERPUD1-204ENST00000439977 SMC4Q9NTJ3 1288 aa17.35■□□□□ 0.37
HERPUD1-204ENST00000439977 PMFBP1Q8TBY8 1022 aa17.34■□□□□ 0.37
HERPUD1-204ENST00000439977 MAPK8IP3Q9UPT6 1336 aa17.34■□□□□ 0.37
HERPUD1-204ENST00000439977 SETBP1Q9Y6X0 1596 aa17.34■□□□□ 0.37
HERPUD1-204ENST00000439977 ABCC3O15438 1527 aa17.34■□□□□ 0.37
HERPUD1-204ENST00000439977 GSE1Q14687 1217 aa17.34■□□□□ 0.37
HERPUD1-204ENST00000439977 SHPRHQ149N8 1683 aa17.33■□□□□ 0.37
HERPUD1-204ENST00000439977 MLH3Q9UHC1 1453 aa17.33■□□□□ 0.37
HERPUD1-204ENST00000439977 FYB1O15117 783 aa17.33■□□□□ 0.37
HERPUD1-204ENST00000439977 MYO3AQ8NEV4 1616 aa17.33■□□□□ 0.36
HERPUD1-204ENST00000439977 TULP4Q9NRJ4 1543 aa17.33■□□□□ 0.36
HERPUD1-204ENST00000439977 TMPOP42166 694 aaKnown RBP17.33■□□□□ 0.36
HERPUD1-204ENST00000439977 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.33■□□□□ 0.36
HERPUD1-204ENST00000439977 IQSEC2Q5JU85 1478 aa17.32■□□□□ 0.36
HERPUD1-204ENST00000439977 CCDC27Q2M243 656 aa17.32■□□□□ 0.36
HERPUD1-204ENST00000439977 ZKSCAN2Q63HK3 967 aa17.31■□□□□ 0.36
HERPUD1-204ENST00000439977 DZIP1LQ8IYY4 767 aaKnown RBP17.31■□□□□ 0.36
HERPUD1-204ENST00000439977 STAG3Q9UJ98 1225 aa17.31■□□□□ 0.36
HERPUD1-204ENST00000439977 TRIM35Q9UPQ4 493 aa17.31■□□□□ 0.36
HERPUD1-204ENST00000439977 MVPQ14764 893 aaKnown RBP17.31■□□□□ 0.36
HERPUD1-204ENST00000439977 ITPRIPQ8IWB1 547 aa17.31■□□□□ 0.36
HERPUD1-204ENST00000439977 SPRYD3Q8NCJ5 442 aa17.31■□□□□ 0.36
HERPUD1-204ENST00000439977 SSH1Q8WYL5 1049 aa17.31■□□□□ 0.36
HERPUD1-204ENST00000439977 CABP1Q9NZU7 370 aa17.31■□□□□ 0.36
HERPUD1-204ENST00000439977 RIPK4P57078 832 aa17.31■□□□□ 0.36
HERPUD1-204ENST00000439977 BRPF3Q9ULD4 1205 aa17.31■□□□□ 0.36
HERPUD1-204ENST00000439977 PPLO60437 1756 aa17.3■□□□□ 0.36
HERPUD1-204ENST00000439977 GLI2P10070 1586 aa17.3■□□□□ 0.36
HERPUD1-204ENST00000439977 TRIM27P14373 513 aa17.3■□□□□ 0.36
HERPUD1-204ENST00000439977 RWDD1Q9H446 243 aaPredicted RBP17.3■□□□□ 0.36
HERPUD1-204ENST00000439977 NINLQ9Y2I6 1382 aa17.3■□□□□ 0.36
HERPUD1-204ENST00000439977 PLEKHF1Q96S99 279 aa17.3■□□□□ 0.36
HERPUD1-204ENST00000439977 YEATS2Q9ULM3 1422 aa17.29■□□□□ 0.36
HERPUD1-204ENST00000439977 CDK19Q9BWU1 502 aa17.28■□□□□ 0.36
HERPUD1-204ENST00000439977 TERF2IPQ9NYB0 399 aa17.28■□□□□ 0.36
HERPUD1-204ENST00000439977 NOB1Q9ULX3 412 aaKnown RBP17.28■□□□□ 0.36
HERPUD1-204ENST00000439977 HECW2Q9P2P5 1572 aa17.28■□□□□ 0.36
HERPUD1-204ENST00000439977 WAPLQ7Z5K2 1190 aa17.27■□□□□ 0.36
HERPUD1-204ENST00000439977 SIGLEC1Q9BZZ2 1709 aa17.27■□□□□ 0.36
HERPUD1-204ENST00000439977 SLC52A1Q9NWF4 448 aa17.27■□□□□ 0.35
HERPUD1-204ENST00000439977 DIAPH1O60610 1272 aaKnown RBP17.26■□□□□ 0.35
HERPUD1-204ENST00000439977 HMOX1P09601 288 aa17.25■□□□□ 0.35
HERPUD1-204ENST00000439977 THUMPD2Q9BTF0 503 aaKnown RBP17.25■□□□□ 0.35
HERPUD1-204ENST00000439977 ABCC11Q96J66 1382 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 146.4 ms