RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 LNPKQ9C0E8 428 aa15.28■□□□□ 0.04
TCOF1-205ENST00000439160 DHX29Q7Z478 1369 aaKnown RBP15.28■□□□□ 0.04
TCOF1-205ENST00000439160 NSD3Q9BZ95 1437 aa15.28■□□□□ 0.04
TCOF1-205ENST00000439160 MAPKBP1O60336 1514 aa15.27■□□□□ 0.04
TCOF1-205ENST00000439160 KIF21AQ7Z4S6 1674 aa15.27■□□□□ 0.04
TCOF1-205ENST00000439160 CCDC61Q9Y6R9 512 aa15.27■□□□□ 0.03
TCOF1-205ENST00000439160 GPRASP1Q5JY77 1395 aa15.27■□□□□ 0.03
TCOF1-205ENST00000439160 ATAD2Q6PL18 1390 aa15.26■□□□□ 0.03
TCOF1-205ENST00000439160 PLCH2O75038 1416 aa15.26■□□□□ 0.03
TCOF1-205ENST00000439160 NEXNQ0ZGT2 675 aa15.26■□□□□ 0.03
TCOF1-205ENST00000439160 SYTL4Q96C24 671 aaPredicted RBP15.26■□□□□ 0.03
TCOF1-205ENST00000439160 ANKLE2Q86XL3 938 aa15.26■□□□□ 0.03
TCOF1-205ENST00000439160 NUDT16Q96DE0 195 aaKnown RBP15.26■□□□□ 0.03
TCOF1-205ENST00000439160 CTTNBP2Q8WZ74 1663 aa15.26■□□□□ 0.03
TCOF1-205ENST00000439160 DENND4BO75064 1496 aaPredicted RBP15.25■□□□□ 0.03
TCOF1-205ENST00000439160 FANCIQ9NVI1 1328 aa15.25■□□□□ 0.03
TCOF1-205ENST00000439160 GTF2E1P29083 439 aaPredicted RBP15.24■□□□□ 0.03
TCOF1-205ENST00000439160 GBP4Q96PP9 640 aa15.24■□□□□ 0.03
TCOF1-205ENST00000439160 KIAA0556O60303 1618 aa15.24■□□□□ 0.03
TCOF1-205ENST00000439160 ASXL2Q76L83 1435 aa15.24■□□□□ 0.03
TCOF1-205ENST00000439160 GLIPR1L2Q4G1C9 344 aa15.24■□□□□ 0.03
TCOF1-205ENST00000439160 NOS1P29475 1434 aa15.23■□□□□ 0.03
TCOF1-205ENST00000439160 USP35Q9P2H5 1018 aa15.23■□□□□ 0.03
TCOF1-205ENST00000439160 POGZQ7Z3K3 1410 aa15.22■□□□□ 0.03
TCOF1-205ENST00000439160 TWISTNBQ3B726 338 aaPredicted RBP15.22■□□□□ 0.03
TCOF1-205ENST00000439160 AIMP1Q12904 312 aaKnown RBP15.22■□□□□ 0.03
TCOF1-205ENST00000439160 SYCP2Q9BX26 1530 aa15.22■□□□□ 0.03
TCOF1-205ENST00000439160 XPCQ01831 940 aaPredicted RBP15.22■□□□□ 0.03
TCOF1-205ENST00000439160 GAS2L2Q8NHY3 880 aa15.21■□□□□ 0.03
TCOF1-205ENST00000439160 WDR62O43379 1518 aa15.21■□□□□ 0.03
TCOF1-205ENST00000439160 TRAPPC8Q9Y2L5 1435 aa15.21■□□□□ 0.03
TCOF1-205ENST00000439160 EIF4G3O43432 1585 aaKnown RBP15.21■□□□□ 0.03
TCOF1-205ENST00000439160 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.21■□□□□ 0.03
TCOF1-205ENST00000439160 DDX58O95786 925 aaKnown RBP15.2■□□□□ 0.02
TCOF1-205ENST00000439160 DNTTIP2Q5QJE6 756 aaKnown RBP15.2■□□□□ 0.02
TCOF1-205ENST00000439160 RBM33Q96EV2 1170 aaKnown RBP15.2■□□□□ 0.02
TCOF1-205ENST00000439160 DISP3Q9P2K9 1392 aa15.2■□□□□ 0.02
TCOF1-205ENST00000439160 ST18O60284 1047 aa15.19■□□□□ 0.02
TCOF1-205ENST00000439160 C14orf93Q9H972 538 aaKnown RBP15.19■□□□□ 0.02
TCOF1-205ENST00000439160 KDM5BQ9UGL1 1544 aa15.19■□□□□ 0.02
TCOF1-205ENST00000439160 WWC1Q8IX03 1113 aa15.19■□□□□ 0.02
TCOF1-205ENST00000439160 DISP1Q96F81 1524 aa15.19■□□□□ 0.02
TCOF1-205ENST00000439160 ISY1Q9ULR0 285 aaKnown RBP15.18■□□□□ 0.02
TCOF1-205ENST00000439160 NOB1Q9ULX3 412 aaKnown RBP15.18■□□□□ 0.02
TCOF1-205ENST00000439160 FOXD4L5Q5VV16 416 aaPredicted RBP15.18■□□□□ 0.02
TCOF1-205ENST00000439160 WDR63Q8IWG1 891 aa15.18■□□□□ 0.02
TCOF1-205ENST00000439160 FOXD4L4Q8WXT5 416 aaPredicted RBP15.18■□□□□ 0.02
TCOF1-205ENST00000439160 PDE3AQ14432 1141 aa15.18■□□□□ 0.02
TCOF1-205ENST00000439160 C1orf115Q9H7X2 142 aa15.18■□□□□ 0.02
TCOF1-205ENST00000439160 SMG6Q86US8 1419 aaKnown RBP15.18■□□□□ 0.02
TCOF1-205ENST00000439160 NME9Q86XW9 330 aa15.18■□□□□ 0.02
TCOF1-205ENST00000439160 THUMPD2Q9BTF0 503 aaKnown RBP15.17■□□□□ 0.02
TCOF1-205ENST00000439160 GNL2Q13823 731 aaKnown RBP15.17■□□□□ 0.02
TCOF1-205ENST00000439160 TULP1O00294 542 aaPredicted RBP15.16■□□□□ 0.02
TCOF1-205ENST00000439160 NAP1L5Q96NT1 182 aaPredicted RBP15.16■□□□□ 0.02
TCOF1-205ENST00000439160 NUP160Q12769 1436 aa15.16■□□□□ 0.02
TCOF1-205ENST00000439160 FAM135AQ9P2D6 1515 aa15.16■□□□□ 0.02
TCOF1-205ENST00000439160 TCOF1Q13428 1488 aaKnown RBP15.16■□□□□ 0.02
TCOF1-205ENST00000439160 SCAF11Q99590 1463 aaKnown RBP15.16■□□□□ 0.02
TCOF1-205ENST00000439160 HSP90B1P14625 803 aaKnown RBP15.16■□□□□ 0.02
TCOF1-205ENST00000439160 FRAT2O75474 233 aaPredicted RBP15.16■□□□□ 0.02
TCOF1-205ENST00000439160 TMPOP42166 694 aaKnown RBP15.16■□□□□ 0.02
TCOF1-205ENST00000439160 FCHSD2O94868 740 aa15.16■□□□□ 0.02
TCOF1-205ENST00000439160 SLC4A2P04920 1241 aa15.15■□□□□ 0.02
TCOF1-205ENST00000439160 RIC3Q7Z5B4 369 aa15.15■□□□□ 0.02
TCOF1-205ENST00000439160 SLFN5Q08AF3 891 aa15.15■□□□□ 0.02
TCOF1-205ENST00000439160 PLEKHO1Q53GL0 409 aaPredicted RBP15.15■□□□□ 0.02
TCOF1-205ENST00000439160 DIAPH3Q9NSV4 1193 aa15.15■□□□□ 0.02
TCOF1-205ENST00000439160 IFIT2P09913 472 aaKnown RBP15.15■□□□□ 0.02
TCOF1-205ENST00000439160 AAMPQ13685 434 aa15.15■□□□□ 0.02
TCOF1-205ENST00000439160 AMOTL2Q9Y2J4 779 aa15.15■□□□□ 0.02
TCOF1-205ENST00000439160 UBTFL1P0CB47 393 aaPredicted RBP15.15■□□□□ 0.02
TCOF1-205ENST00000439160 WDR7Q9Y4E6 1490 aa15.14■□□□□ 0.01
TCOF1-205ENST00000439160 L1TD1Q5T7N2 865 aaKnown RBP15.14■□□□□ 0.01
TCOF1-205ENST00000439160 CCDC30Q5VVM6 783 aa15.14■□□□□ 0.01
TCOF1-205ENST00000439160 STRN4Q9NRL3 753 aa15.14■□□□□ 0.01
TCOF1-205ENST00000439160 EMILIN1Q9Y6C2 1016 aa15.14■□□□□ 0.01
TCOF1-205ENST00000439160 WASLO00401 505 aaPredicted RBP15.13■□□□□ 0.01
TCOF1-205ENST00000439160 G3BP1Q13283 466 aaKnown RBP eCLIP15.13■□□□□ 0.012e-7■■■■□ 22.1
TCOF1-205ENST00000439160 TOMM22Q9NS69 142 aa15.13■□□□□ 0.01
TCOF1-205ENST00000439160 ZNF530Q6P9A1 599 aaPredicted RBP15.13■□□□□ 0.01
TCOF1-205ENST00000439160 PDZRN3Q9UPQ7 1066 aa15.13■□□□□ 0.01
TCOF1-205ENST00000439160 REC8O95072 547 aa15.13■□□□□ 0.01
TCOF1-205ENST00000439160 ATF7IPQ6VMQ6 1270 aa15.13■□□□□ 0.01
TCOF1-205ENST00000439160 ANO2Q9NQ90 1003 aa15.13■□□□□ 0.01
TCOF1-205ENST00000439160 HDGFL1Q5TGJ6 251 aa15.12■□□□□ 0.01
TCOF1-205ENST00000439160 CFAP43Q8NDM7 1665 aa15.12■□□□□ 0.01
TCOF1-205ENST00000439160 ITSN2Q9NZM3 1697 aa15.12■□□□□ 0.01
TCOF1-205ENST00000439160 ZC3H6P61129 1189 aaKnown RBP15.12■□□□□ 0.01
TCOF1-205ENST00000439160 A2MP01023 1474 aa15.12■□□□□ 0.01
TCOF1-205ENST00000439160 DUOX2Q9NRD8 1548 aa15.12■□□□□ 0.01
TCOF1-205ENST00000439160 FOXD4L6Q3SYB3 417 aaPredicted RBP15.12■□□□□ 0.01
TCOF1-205ENST00000439160 FOXD4L3Q6VB84 417 aaPredicted RBP15.12■□□□□ 0.01
TCOF1-205ENST00000439160 ZNF428Q96B54 188 aa15.12■□□□□ 0.01
TCOF1-205ENST00000439160 DCTN1Q14203 1278 aa15.11■□□□□ 0.01
TCOF1-205ENST00000439160 ABCA5Q8WWZ7 1642 aa15.11■□□□□ 0.01
TCOF1-205ENST00000439160 CDK11BP21127 795 aaKnown RBP15.11■□□□□ 0.01
TCOF1-205ENST00000439160 NFE2L2Q16236 605 aa15.11■□□□□ 0.01
TCOF1-205ENST00000439160 FBLN1P23142 703 aa15.1■□□□□ 0.01
TCOF1-205ENST00000439160 MIS18AQ9NYP9 233 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms